Wall clock time and date at job start Mon Mar 30 2020 00:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47222 * 2 1 4 4 C 1.50701 * 109.46880 * 240.00368 * 2 1 3 5 5 H 1.08002 * 119.99791 * 239.99547 * 4 2 1 6 6 C 1.37877 * 120.00332 * 59.99838 * 4 2 1 7 7 N 1.31518 * 119.99712 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00176 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47174 * 60.00393 * 8 6 4 10 10 H 1.48497 * 109.47196 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47566 * 300.00219 * 8 6 4 12 12 N 1.46499 * 109.47430 * 120.00287 * 2 1 3 13 13 C 1.46502 * 120.00019 * 59.99724 * 12 2 1 14 14 C 1.34777 * 120.00161 * 239.99900 * 12 2 1 15 15 O 1.21590 * 119.99989 * 5.08600 * 14 12 2 16 16 C 1.47531 * 120.00070 * 185.08121 * 14 12 2 17 17 C 1.39724 * 120.18113 * 314.99168 * 16 14 12 18 18 C 1.37981 * 119.88314 * 179.78707 * 17 16 14 19 19 F 1.35103 * 119.88060 * 180.25112 * 18 17 16 20 20 C 1.38735 * 120.24756 * 0.46946 * 18 17 16 21 21 C 1.38050 * 120.36301 * 359.78366 * 20 18 17 22 22 C 1.38686 * 120.11800 * 359.97438 * 21 20 18 23 23 O 1.35697 * 120.13040 * 179.97438 * 22 21 20 24 24 H 1.09003 * 109.47222 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47025 * 299.99865 * 1 2 3 26 26 H 1.09003 * 109.47355 * 59.99246 * 1 2 3 27 27 H 0.96995 * 119.99790 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.47117 * 275.33064 * 13 12 2 29 29 H 1.08993 * 109.47334 * 155.32687 * 13 12 2 30 30 H 1.08998 * 109.46936 * 35.32754 * 13 12 2 31 31 H 1.07999 * 120.05859 * 359.97438 * 17 16 14 32 32 H 1.07997 * 119.82014 * 179.76392 * 20 18 17 33 33 H 1.08007 * 119.94439 * 179.97438 * 21 20 18 34 34 H 0.96704 * 113.99691 * 270.01907 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.8278 -2.5196 -4.0083 10 1 1.8277 -0.4190 -5.2204 11 1 3.8072 -1.1189 -4.0079 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0110 1.1519 1.9399 16 6 3.3772 -0.7598 3.2284 17 6 2.5928 -1.6425 3.9753 18 6 3.1464 -2.3198 5.0423 19 9 2.3893 -3.1771 5.7613 20 6 4.4766 -2.1203 5.3825 21 6 5.2595 -1.2466 4.6548 22 6 4.7199 -0.5617 3.5764 23 8 5.4891 0.2975 2.8612 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 0.7094 1.1619 -3.4843 28 1 0.6911 -2.1465 1.9158 29 1 2.4166 -2.5571 2.0659 30 1 1.6221 -2.6196 0.4744 31 1 1.5558 -1.7966 3.7159 32 1 4.9018 -2.6512 6.2214 33 1 6.2941 -1.0962 4.9259 34 1 5.4751 1.2062 3.1918 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128563413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:05 Heat of formation + Delta-G solvation = -109.459261 kcal Electronic energy + Delta-G solvation = -20425.698179 eV Core-core repulsion = 17044.954590 eV Total energy + Delta-G solvation = -3380.743589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.91851 -41.57528 -39.68700 -37.66031 -37.08092 -34.92052 -32.84754 -30.93585 -30.35108 -27.80928 -27.33399 -25.36112 -23.83465 -22.74567 -20.65663 -19.38932 -18.75439 -18.33854 -18.05254 -17.39472 -16.96717 -16.76039 -16.39617 -16.08782 -15.85794 -15.14611 -14.85361 -14.74894 -14.36501 -14.12101 -13.68320 -13.60875 -13.27697 -12.98716 -12.91232 -12.73642 -12.66994 -12.61817 -12.21695 -12.13991 -11.80700 -11.25133 -10.81315 -10.53712 -10.16596 -9.61721 -9.39547 -8.17022 -6.33806 -0.29549 -0.01157 1.40381 1.43091 1.50364 1.70026 2.15131 2.41288 2.48236 3.10900 3.11890 3.15011 3.49819 3.71725 3.99106 4.15777 4.31458 4.53171 4.60044 4.73622 4.77375 4.85648 4.88455 4.93932 4.99707 5.01367 5.17220 5.43788 5.52741 5.62444 5.64705 5.99006 6.12256 6.69215 6.70365 6.72266 7.20535 7.39690 8.87457 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.005424 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.021611 B = 5160.868008 C = 5451.884656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H 0.011 0.989 4 C -0.543 4.543 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.591 5.591 13 C 0.073 3.927 14 C 0.544 3.456 15 O -0.589 6.589 16 C -0.144 4.144 17 C -0.111 4.111 18 C 0.080 3.920 19 F -0.135 7.135 20 C -0.100 4.100 21 C -0.111 4.111 22 C 0.134 3.866 23 O -0.504 6.504 24 H 0.047 0.953 25 H 0.021 0.979 26 H 0.070 0.930 27 H 0.266 0.734 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.181 0.819 33 H 0.177 0.823 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -8.464 16.401 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.029 0.971 4 C -0.581 4.581 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.204 1.204 12 N -0.320 5.320 13 C -0.069 4.069 14 C 0.333 3.667 15 O -0.471 6.471 16 C -0.148 4.148 17 C -0.131 4.131 18 C 0.061 3.939 19 F -0.114 7.114 20 C -0.119 4.119 21 C -0.129 4.129 22 C 0.088 3.912 23 O -0.318 6.318 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.199 0.801 33 H 0.195 0.805 34 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 5.814 -8.263 15.841 18.788 hybrid contribution -0.258 0.399 -0.908 1.025 sum 5.556 -7.864 14.933 17.768 Atomic orbital electron populations 1.21868 0.96805 1.00223 1.00110 1.18591 0.91875 0.92209 0.81202 0.97058 1.21511 1.32188 1.13224 0.91170 0.92334 1.25721 0.94965 0.95628 1.01947 1.70009 1.37081 1.23699 1.24617 0.85502 0.78365 0.79017 0.78104 1.18686 1.20612 1.20387 1.48161 1.48327 1.13256 1.22265 1.22109 1.00914 0.80923 1.02921 1.18620 0.78585 0.86572 0.82947 1.90680 1.62659 1.16926 1.76847 1.20182 0.95307 1.01274 0.98064 1.21350 1.01541 0.95497 0.94684 1.17509 0.90568 0.93218 0.92613 1.91524 1.75843 1.67620 1.76414 1.21529 0.90972 0.98149 1.01228 1.21504 1.02391 0.96560 0.92407 1.18782 0.87258 0.93852 0.91353 1.84680 1.66720 1.23677 1.56673 0.93383 0.96019 0.91153 0.92497 0.91005 0.89670 0.91148 0.83183 0.80124 0.80526 0.72929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 8.97 71.98 0.65 -5.82 16 2 C 0.26 14.09 2.63 44.24 0.12 14.20 16 3 H 0.01 0.73 6.91 -2.39 -0.02 0.71 16 4 C -0.54 -30.22 8.03 25.60 0.21 -30.02 16 5 H 0.06 3.19 7.25 -2.91 -0.02 3.17 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 8 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 N -0.59 -26.37 2.75 -830.57 -2.29 -28.65 16 13 C 0.07 2.50 8.04 127.77 1.03 3.53 16 14 C 0.54 23.97 7.05 86.69 0.61 24.58 16 15 O -0.59 -30.51 15.68 8.50 0.13 -30.38 16 16 C -0.14 -4.72 5.08 -20.01 -0.10 -4.83 16 17 C -0.11 -2.89 7.43 22.57 0.17 -2.72 16 18 C 0.08 1.67 7.28 22.33 0.16 1.83 16 19 F -0.14 -2.79 17.26 44.97 0.78 -2.01 16 20 C -0.10 -1.58 10.01 22.34 0.22 -1.36 16 21 C -0.11 -2.01 9.97 22.33 0.22 -1.79 16 22 C 0.13 3.75 6.69 22.83 0.15 3.91 16 23 O -0.50 -15.51 12.41 -77.67 -0.96 -16.47 16 24 H 0.05 2.13 7.67 -2.39 -0.02 2.12 16 25 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 27 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.07 2.07 7.59 -2.38 -0.02 2.05 16 29 H 0.08 2.47 5.28 -2.39 -0.01 2.46 16 30 H 0.07 2.54 6.96 -2.39 -0.02 2.52 16 31 H 0.15 3.71 6.19 -2.91 -0.02 3.69 16 32 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.41 9.83 9.06 -74.05 -0.67 9.15 16 Total: -1.00 -72.27 292.33 4.29 -67.98 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.48 Total: 13.95 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 3.88 Total: 2.92 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.04 Total: -81.61 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -0.83 Total: -46.85 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.27 4.29 -67.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128563413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.475 kcal (2) G-P(sol) polarization free energy of solvation -72.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds