Wall clock time and date at job start Mon Mar 30 2020 00:30:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09003 * 109.47222 * 2 1
4 4 C 1.50701 * 109.46880 * 240.00368 * 2 1 3
5 5 H 1.08002 * 119.99791 * 239.99547 * 4 2 1
6 6 C 1.37877 * 120.00332 * 59.99838 * 4 2 1
7 7 N 1.31518 * 119.99712 * 0.02562 * 6 4 2
8 8 Si 1.86794 * 120.00176 * 179.97438 * 6 4 2
9 9 H 1.48502 * 109.47174 * 60.00393 * 8 6 4
10 10 H 1.48497 * 109.47196 * 180.02562 * 8 6 4
11 11 H 1.48495 * 109.47566 * 300.00219 * 8 6 4
12 12 N 1.46499 * 109.47430 * 120.00287 * 2 1 3
13 13 C 1.46502 * 120.00019 * 59.99724 * 12 2 1
14 14 C 1.34777 * 120.00161 * 239.99900 * 12 2 1
15 15 O 1.21590 * 119.99989 * 5.08600 * 14 12 2
16 16 C 1.47531 * 120.00070 * 185.08121 * 14 12 2
17 17 C 1.39724 * 120.18113 * 314.99168 * 16 14 12
18 18 C 1.37981 * 119.88314 * 179.78707 * 17 16 14
19 19 F 1.35103 * 119.88060 * 180.25112 * 18 17 16
20 20 C 1.38735 * 120.24756 * 0.46946 * 18 17 16
21 21 C 1.38050 * 120.36301 * 359.78366 * 20 18 17
22 22 C 1.38686 * 120.11800 * 359.97438 * 21 20 18
23 23 O 1.35697 * 120.13040 * 179.97438 * 22 21 20
24 24 H 1.09003 * 109.47222 * 179.97438 * 1 2 3
25 25 H 1.09006 * 109.47025 * 299.99865 * 1 2 3
26 26 H 1.09003 * 109.47355 * 59.99246 * 1 2 3
27 27 H 0.96995 * 119.99790 * 179.97438 * 7 6 4
28 28 H 1.09006 * 109.47117 * 275.33064 * 13 12 2
29 29 H 1.08993 * 109.47334 * 155.32687 * 13 12 2
30 30 H 1.08998 * 109.46936 * 35.32754 * 13 12 2
31 31 H 1.07999 * 120.05859 * 359.97438 * 17 16 14
32 32 H 1.07997 * 119.82014 * 179.76392 * 20 18 17
33 33 H 1.08007 * 119.94439 * 179.97438 * 21 20 18
34 34 H 0.96704 * 113.99691 * 270.01907 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0322 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1315
6 6 1.6991 -0.2393 -2.4828
7 7 0.9434 0.8303 -2.6034
8 14 2.3223 -1.1194 -4.0080
9 1 1.8278 -2.5196 -4.0083
10 1 1.8277 -0.4190 -5.2204
11 1 3.8072 -1.1189 -4.0079
12 7 2.0183 -0.6907 1.1961
13 6 1.6644 -2.0932 1.4279
14 6 2.7932 -0.0357 2.0833
15 8 3.0110 1.1519 1.9399
16 6 3.3772 -0.7598 3.2284
17 6 2.5928 -1.6425 3.9753
18 6 3.1464 -2.3198 5.0423
19 9 2.3893 -3.1771 5.7613
20 6 4.4766 -2.1203 5.3825
21 6 5.2595 -1.2466 4.6548
22 6 4.7199 -0.5617 3.5764
23 8 5.4891 0.2975 2.8612
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 -0.3634 0.5140 -0.8899
27 1 0.7094 1.1619 -3.4843
28 1 0.6911 -2.1465 1.9158
29 1 2.4166 -2.5571 2.0659
30 1 1.6221 -2.6196 0.4744
31 1 1.5558 -1.7966 3.7159
32 1 4.9018 -2.6512 6.2214
33 1 6.2941 -1.0962 4.9259
34 1 5.4751 1.2062 3.1918
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000128563413.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:30:05
Heat of formation + Delta-G solvation = -109.459261 kcal
Electronic energy + Delta-G solvation = -20425.698179 eV
Core-core repulsion = 17044.954590 eV
Total energy + Delta-G solvation = -3380.743589 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.106 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-49.91851 -41.57528 -39.68700 -37.66031 -37.08092 -34.92052 -32.84754 -30.93585
-30.35108 -27.80928 -27.33399 -25.36112 -23.83465 -22.74567 -20.65663 -19.38932
-18.75439 -18.33854 -18.05254 -17.39472 -16.96717 -16.76039 -16.39617 -16.08782
-15.85794 -15.14611 -14.85361 -14.74894 -14.36501 -14.12101 -13.68320 -13.60875
-13.27697 -12.98716 -12.91232 -12.73642 -12.66994 -12.61817 -12.21695 -12.13991
-11.80700 -11.25133 -10.81315 -10.53712 -10.16596 -9.61721 -9.39547 -8.17022
-6.33806 -0.29549 -0.01157 1.40381 1.43091 1.50364 1.70026 2.15131
2.41288 2.48236 3.10900 3.11890 3.15011 3.49819 3.71725 3.99106
4.15777 4.31458 4.53171 4.60044 4.73622 4.77375 4.85648 4.88455
4.93932 4.99707 5.01367 5.17220 5.43788 5.52741 5.62444 5.64705
5.99006 6.12256 6.69215 6.70365 6.72266 7.20535 7.39690 8.87457
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.025564 B = 0.005424 C = 0.005135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.021611 B = 5160.868008 C = 5451.884656
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.263 3.737
3 H 0.011 0.989
4 C -0.543 4.543
5 H 0.058 0.942
6 C 0.017 3.983
7 N -0.916 5.916
8 Si 0.965 3.035
9 H -0.262 1.262
10 H -0.281 1.281
11 H -0.278 1.278
12 N -0.591 5.591
13 C 0.073 3.927
14 C 0.544 3.456
15 O -0.589 6.589
16 C -0.144 4.144
17 C -0.111 4.111
18 C 0.080 3.920
19 F -0.135 7.135
20 C -0.100 4.100
21 C -0.111 4.111
22 C 0.134 3.866
23 O -0.504 6.504
24 H 0.047 0.953
25 H 0.021 0.979
26 H 0.070 0.930
27 H 0.266 0.734
28 H 0.072 0.928
29 H 0.085 0.915
30 H 0.070 0.930
31 H 0.151 0.849
32 H 0.181 0.819
33 H 0.177 0.823
34 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.733 -8.464 16.401 19.327
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.161 3.839
3 H 0.029 0.971
4 C -0.581 4.581
5 H 0.077 0.923
6 C -0.183 4.183
7 N -0.554 5.554
8 Si 0.790 3.210
9 H -0.187 1.187
10 H -0.206 1.206
11 H -0.204 1.204
12 N -0.320 5.320
13 C -0.069 4.069
14 C 0.333 3.667
15 O -0.471 6.471
16 C -0.148 4.148
17 C -0.131 4.131
18 C 0.061 3.939
19 F -0.114 7.114
20 C -0.119 4.119
21 C -0.129 4.129
22 C 0.088 3.912
23 O -0.318 6.318
24 H 0.066 0.934
25 H 0.040 0.960
26 H 0.088 0.912
27 H 0.075 0.925
28 H 0.090 0.910
29 H 0.103 0.897
30 H 0.089 0.911
31 H 0.168 0.832
32 H 0.199 0.801
33 H 0.195 0.805
34 H 0.271 0.729
Dipole moment (debyes) X Y Z Total
from point charges 5.814 -8.263 15.841 18.788
hybrid contribution -0.258 0.399 -0.908 1.025
sum 5.556 -7.864 14.933 17.768
Atomic orbital electron populations
1.21868 0.96805 1.00223 1.00110 1.18591 0.91875 0.92209 0.81202
0.97058 1.21511 1.32188 1.13224 0.91170 0.92334 1.25721 0.94965
0.95628 1.01947 1.70009 1.37081 1.23699 1.24617 0.85502 0.78365
0.79017 0.78104 1.18686 1.20612 1.20387 1.48161 1.48327 1.13256
1.22265 1.22109 1.00914 0.80923 1.02921 1.18620 0.78585 0.86572
0.82947 1.90680 1.62659 1.16926 1.76847 1.20182 0.95307 1.01274
0.98064 1.21350 1.01541 0.95497 0.94684 1.17509 0.90568 0.93218
0.92613 1.91524 1.75843 1.67620 1.76414 1.21529 0.90972 0.98149
1.01228 1.21504 1.02391 0.96560 0.92407 1.18782 0.87258 0.93852
0.91353 1.84680 1.66720 1.23677 1.56673 0.93383 0.96019 0.91153
0.92497 0.91005 0.89670 0.91148 0.83183 0.80124 0.80526 0.72929
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.46 8.97 71.98 0.65 -5.82 16
2 C 0.26 14.09 2.63 44.24 0.12 14.20 16
3 H 0.01 0.73 6.91 -2.39 -0.02 0.71 16
4 C -0.54 -30.22 8.03 25.60 0.21 -30.02 16
5 H 0.06 3.19 7.25 -2.91 -0.02 3.17 16
6 C 0.02 0.96 5.30 84.65 0.45 1.41 16
7 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16
8 Si 0.97 43.60 29.54 68.60 2.03 45.62 16
9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16
10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16
11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16
12 N -0.59 -26.37 2.75 -830.57 -2.29 -28.65 16
13 C 0.07 2.50 8.04 127.77 1.03 3.53 16
14 C 0.54 23.97 7.05 86.69 0.61 24.58 16
15 O -0.59 -30.51 15.68 8.50 0.13 -30.38 16
16 C -0.14 -4.72 5.08 -20.01 -0.10 -4.83 16
17 C -0.11 -2.89 7.43 22.57 0.17 -2.72 16
18 C 0.08 1.67 7.28 22.33 0.16 1.83 16
19 F -0.14 -2.79 17.26 44.97 0.78 -2.01 16
20 C -0.10 -1.58 10.01 22.34 0.22 -1.36 16
21 C -0.11 -2.01 9.97 22.33 0.22 -1.79 16
22 C 0.13 3.75 6.69 22.83 0.15 3.91 16
23 O -0.50 -15.51 12.41 -77.67 -0.96 -16.47 16
24 H 0.05 2.13 7.67 -2.39 -0.02 2.12 16
25 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16
26 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16
27 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16
28 H 0.07 2.07 7.59 -2.38 -0.02 2.05 16
29 H 0.08 2.47 5.28 -2.39 -0.01 2.46 16
30 H 0.07 2.54 6.96 -2.39 -0.02 2.52 16
31 H 0.15 3.71 6.19 -2.91 -0.02 3.69 16
32 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16
33 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16
34 H 0.41 9.83 9.06 -74.05 -0.67 9.15 16
Total: -1.00 -72.27 292.33 4.29 -67.98
By element:
Atomic # 1 Polarization: 13.47 SS G_CDS: 0.48 Total: 13.95 kcal
Atomic # 6 Polarization: -0.96 SS G_CDS: 3.88 Total: 2.92 kcal
Atomic # 7 Polarization: -79.57 SS G_CDS: -2.04 Total: -81.61 kcal
Atomic # 8 Polarization: -46.02 SS G_CDS: -0.83 Total: -46.85 kcal
Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal
Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal
Total: -72.27 4.29 -67.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000128563413.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.475 kcal
(2) G-P(sol) polarization free energy of solvation -72.271 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.747 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds