Wall clock time and date at job start Mon Mar 30 2020 00:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35966 * 117.00146 * 2 1 4 4 C 1.38312 * 119.99189 * 359.97303 * 3 2 1 5 5 C 1.39613 * 119.81985 * 179.79008 * 4 3 2 6 6 C 1.47728 * 120.09946 * 180.23274 * 5 4 3 7 7 O 1.21571 * 120.00235 * 0.27268 * 6 5 4 8 8 N 1.34781 * 120.00395 * 180.27817 * 6 5 4 9 9 C 1.46494 * 120.00351 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47061 * 324.99942 * 9 8 6 11 11 C 1.52995 * 109.47307 * 84.99651 * 9 8 6 12 12 C 1.50696 * 109.47283 * 204.99922 * 9 8 6 13 13 H 1.08006 * 119.99643 * 0.02562 * 12 9 8 14 14 C 1.37875 * 120.00253 * 179.97438 * 12 9 8 15 15 N 1.31508 * 119.99780 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00152 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.46877 * 60.00178 * 16 14 12 18 18 H 1.48494 * 109.47126 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47172 * 300.00807 * 16 14 12 20 20 C 1.39645 * 119.80280 * 0.51072 * 5 4 3 21 21 C 1.37886 * 119.98169 * 359.46398 * 20 5 4 22 22 C 1.38530 * 120.18227 * 0.28425 * 21 20 5 23 23 F 1.35099 * 119.90465 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47180 * 300.00776 * 1 2 3 25 25 H 1.09009 * 109.46694 * 60.00151 * 1 2 3 26 26 H 1.08993 * 109.47523 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.09270 * 0.04982 * 4 3 2 28 28 H 0.97004 * 119.99508 * 359.97438 * 8 6 5 29 29 H 1.08997 * 109.47767 * 180.02562 * 11 9 8 30 30 H 1.08998 * 109.47269 * 300.00348 * 11 9 8 31 31 H 1.09011 * 109.46932 * 59.99768 * 11 9 8 32 32 H 0.97008 * 119.99975 * 179.97438 * 15 14 12 33 33 H 1.08002 * 120.01145 * 179.75089 * 20 5 4 34 34 H 1.08001 * 119.91297 * 180.25298 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3713 -0.0006 5 6 1.9305 3.6134 0.0039 6 6 1.1318 4.8561 0.0085 7 8 -0.0825 4.7983 0.0134 8 7 1.7493 6.0542 0.0071 9 6 0.9573 7.2865 0.0111 10 1 0.0504 7.1375 -0.5750 11 6 0.5812 7.6464 1.4498 12 6 1.7666 8.4058 -0.5915 13 1 2.7705 8.2178 -0.9428 14 6 1.2252 9.6696 -0.6954 15 7 0.0027 9.8983 -0.2681 16 14 2.2288 11.0572 -1.4417 17 1 2.5948 10.7078 -2.8378 18 1 1.4259 12.3063 -1.4377 19 1 3.4637 11.2604 -0.6424 20 6 3.3254 3.6775 -0.0019 21 6 4.0686 2.5160 -0.0009 22 6 3.4353 1.2840 0.0000 23 9 4.1689 0.1495 0.0006 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 0.2143 2.3164 -0.0002 28 1 2.7182 6.1003 0.0035 29 1 -0.0085 8.5631 1.4528 30 1 -0.0042 6.8369 1.8857 31 1 1.4881 7.7954 2.0360 32 1 -0.3781 10.7876 -0.3408 33 1 3.8221 4.6365 -0.0026 34 1 5.1474 2.5669 -0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129533013.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:07 Heat of formation + Delta-G solvation = -116.465407 kcal Electronic energy + Delta-G solvation = -19703.724201 eV Core-core repulsion = 16322.676802 eV Total energy + Delta-G solvation = -3381.047398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.94615 -41.46968 -40.30429 -38.23061 -36.76691 -34.40573 -32.25233 -31.59601 -30.39937 -28.28512 -27.33293 -25.15034 -23.59548 -22.85203 -21.34936 -20.02291 -18.72009 -18.20714 -17.91862 -17.31431 -17.26277 -16.95279 -16.17008 -16.12520 -15.85156 -15.62172 -15.29128 -14.96399 -14.45416 -14.03394 -13.85395 -13.73385 -13.34862 -12.99653 -12.86200 -12.72792 -12.67442 -12.35599 -12.26087 -12.17158 -12.14101 -11.12240 -10.95257 -10.58390 -10.13546 -9.82053 -9.37232 -8.16410 -6.34139 -0.44665 0.11426 1.47882 1.49640 1.57368 1.74327 2.06486 2.30168 2.51997 2.65476 3.03050 3.14614 3.59751 3.73366 3.88868 3.99782 4.30760 4.31005 4.43253 4.63803 4.69847 4.75119 4.80469 4.91345 4.99719 5.08611 5.14125 5.41930 5.45501 5.58122 5.68001 5.89033 6.08759 6.11092 6.71981 6.86856 7.30023 7.45633 8.89822 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.004174 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.974213 B = 6706.808345 C = 7317.786750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.082 3.918 4 C -0.134 4.134 5 C -0.110 4.110 6 C 0.541 3.459 7 O -0.594 6.594 8 N -0.692 5.692 9 C 0.269 3.731 10 H 0.001 0.999 11 C -0.135 4.135 12 C -0.548 4.548 13 H 0.077 0.923 14 C 0.016 3.984 15 N -0.918 5.918 16 Si 0.973 3.027 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.263 1.263 20 C -0.086 4.086 21 C -0.104 4.104 22 C 0.079 3.921 23 F -0.133 7.133 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.131 0.869 27 H 0.145 0.855 28 H 0.407 0.593 29 H 0.068 0.932 30 H 0.012 0.988 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.164 0.836 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.275 -15.671 0.918 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.035 3.965 4 C -0.154 4.154 5 C -0.113 4.113 6 C 0.329 3.671 7 O -0.477 6.477 8 N -0.341 5.341 9 C 0.166 3.834 10 H 0.019 0.981 11 C -0.193 4.193 12 C -0.586 4.586 13 H 0.095 0.905 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.797 3.203 17 H -0.196 1.196 18 H -0.214 1.214 19 H -0.187 1.187 20 C -0.104 4.104 21 C -0.123 4.123 22 C 0.059 3.941 23 F -0.112 7.112 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.162 0.838 28 H 0.244 0.756 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.182 0.818 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.393 -15.758 0.942 17.431 hybrid contribution 0.011 0.796 -0.300 0.850 sum 7.404 -14.962 0.642 16.706 Atomic orbital electron populations 1.23422 0.75944 1.06117 1.02268 1.86104 1.23742 1.25029 1.88789 1.18916 0.91172 0.85569 1.00804 1.21202 1.01252 0.90125 1.02785 1.19852 0.94706 0.92173 1.04575 1.18684 0.87333 0.84568 0.76562 1.90704 1.15825 1.88040 1.53131 1.46203 1.11030 1.05477 1.71400 1.18425 0.90839 0.80646 0.93498 0.98084 1.21909 0.99758 1.00365 0.97305 1.21504 1.01594 0.94002 1.41503 0.90490 1.25789 0.95987 1.01252 0.95423 1.70046 1.15872 1.22911 1.46733 0.85384 0.78504 0.77389 0.78983 1.19576 1.21389 1.18719 1.21389 0.91107 1.00231 0.97711 1.21251 1.02852 0.88267 0.99884 1.17424 0.85777 0.83554 1.07346 1.91497 1.76494 1.49120 1.94042 0.91992 0.92036 0.85097 0.83770 0.75613 0.91353 0.96914 0.93816 0.92537 0.81847 0.79693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -7.88 10.36 -93.17 -0.96 -8.84 16 3 C 0.08 2.12 6.69 22.49 0.15 2.27 16 4 C -0.13 -3.85 8.58 22.62 0.19 -3.65 16 5 C -0.11 -3.34 5.87 -20.10 -0.12 -3.46 16 6 C 0.54 21.81 7.73 86.75 0.67 22.48 16 7 O -0.59 -29.10 16.01 -3.94 -0.06 -29.16 16 8 N -0.69 -28.03 5.02 -449.11 -2.25 -30.28 16 9 C 0.27 13.69 2.56 44.24 0.11 13.80 16 10 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 11 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 12 C -0.55 -28.13 8.73 25.60 0.22 -27.91 16 13 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 14 C 0.02 0.82 5.30 84.65 0.45 1.27 16 15 N -0.92 -51.73 11.32 21.45 0.24 -51.49 16 16 Si 0.97 40.85 29.54 68.60 2.03 42.88 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 C -0.09 -1.92 9.53 22.53 0.21 -1.70 16 21 C -0.10 -1.97 10.00 22.26 0.22 -1.75 16 22 C 0.08 1.87 7.31 22.54 0.16 2.03 16 23 F -0.13 -3.21 17.10 44.97 0.77 -2.45 16 24 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 25 H 0.06 1.07 7.66 -2.38 -0.02 1.05 16 26 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.14 4.24 5.88 -2.91 -0.02 4.22 16 28 H 0.41 13.30 6.56 -92.71 -0.61 12.69 16 29 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 30 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 33 H 0.16 2.90 6.39 -2.91 -0.02 2.88 16 34 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -67.63 298.38 4.35 -63.28 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.53 Total: 17.31 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 4.06 Total: -1.25 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.01 Total: -81.77 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.03 Total: -38.00 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.77 Total: -2.45 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -67.63 4.35 -63.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129533013.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.186 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds