Wall clock time and date at job start Mon Mar 30 2020 00:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 116.99976 * 2 1 4 4 C 1.38310 * 119.99384 * 359.72986 * 3 2 1 5 5 C 1.39612 * 119.82149 * 179.79277 * 4 3 2 6 6 C 1.47727 * 120.10088 * 180.22744 * 5 4 3 7 7 O 1.21575 * 120.00145 * 0.24869 * 6 5 4 8 8 N 1.34779 * 120.00240 * 180.25202 * 6 5 4 9 9 C 1.46498 * 119.99948 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47078 * 35.00211 * 9 8 6 11 11 C 1.53005 * 109.47432 * 274.99822 * 9 8 6 12 12 C 1.50706 * 109.47100 * 155.00176 * 9 8 6 13 13 H 1.08006 * 119.99532 * 359.97438 * 12 9 8 14 14 C 1.37876 * 120.00286 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99587 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00049 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46613 * 60.00201 * 16 14 12 18 18 H 1.48497 * 109.46788 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47017 * 300.00278 * 16 14 12 20 20 C 1.39654 * 119.80091 * 0.47749 * 5 4 3 21 21 C 1.37888 * 119.98151 * 359.75343 * 20 5 4 22 22 C 1.38528 * 120.18269 * 0.02562 * 21 20 5 23 23 F 1.35096 * 119.90215 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99679 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99800 * 1 2 3 27 27 H 1.07993 * 120.09138 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99829 * 0.02562 * 8 6 5 29 29 H 1.08996 * 109.46969 * 180.02562 * 11 9 8 30 30 H 1.08996 * 109.46775 * 300.00723 * 11 9 8 31 31 H 1.09002 * 109.46594 * 60.00010 * 11 9 8 32 32 H 0.96996 * 119.99489 * 179.97438 * 15 14 12 33 33 H 1.08006 * 120.00565 * 179.72945 * 20 5 4 34 34 H 1.08001 * 119.90564 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3713 -0.0056 5 6 1.9304 3.6133 -0.0012 6 6 1.1317 4.8561 -0.0022 7 8 -0.0827 4.7983 -0.0022 8 7 1.7492 6.0541 -0.0030 9 6 0.9571 7.2865 -0.0045 10 1 0.0523 7.1375 0.5847 11 6 0.5762 7.6463 -1.4420 12 6 1.7686 8.4059 0.5952 13 1 2.7737 8.2179 0.9430 14 6 1.2276 9.6697 0.7008 15 7 0.0035 9.8983 0.2776 16 14 2.2332 11.0570 1.4448 17 1 3.4658 11.2603 0.6421 18 1 1.4298 12.3059 1.4443 19 1 2.6029 10.7073 2.8399 20 6 3.3255 3.6774 -0.0013 21 6 4.0686 2.5159 -0.0005 22 6 3.4353 1.2839 -0.0002 23 9 4.1689 0.1495 0.0000 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2143 2.3164 -0.0096 28 1 2.7181 6.1003 -0.0035 29 1 -0.0127 8.5634 -1.4431 30 1 1.4810 7.7951 -2.0312 31 1 -0.0107 6.8366 -1.8758 32 1 -0.3772 10.7873 0.3523 33 1 3.8221 4.6365 -0.0023 34 1 5.1474 2.5669 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129533244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:13 Heat of formation + Delta-G solvation = -96.333605 kcal Electronic energy + Delta-G solvation = -19702.801612 eV Core-core repulsion = 16322.627194 eV Total energy + Delta-G solvation = -3380.174418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.91087 -40.30225 -38.92843 -37.09569 -34.90798 -32.54280 -30.97509 -30.47468 -28.79627 -27.35701 -25.30751 -23.83444 -22.58335 -21.23397 -19.70499 -18.72698 -17.43497 -16.93525 -16.74703 -16.29024 -15.65021 -15.26421 -15.17748 -14.64692 -14.50469 -14.33039 -14.21730 -13.35470 -12.93238 -12.82178 -12.46951 -12.35365 -11.83738 -11.75501 -11.33272 -11.26794 -11.12976 -10.98377 -10.79165 -10.37842 -10.27533 -9.29216 -9.11681 -9.04261 -8.60282 -8.38302 -7.99420 -6.16469 -4.26332 0.69651 1.11429 2.95581 3.02035 3.23401 3.28924 3.29777 3.86706 3.97022 4.06866 4.32395 4.56793 4.84221 4.98502 5.03148 5.04344 5.15340 5.18144 5.33259 5.37352 5.78010 5.81819 6.03883 6.20685 6.41408 6.77525 6.90647 7.07653 7.08595 7.34851 7.48673 7.63559 7.85067 8.09133 8.54521 8.70454 8.97960 9.41061 10.89524 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032554 B = 0.004174 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.900379 B = 6706.573342 C = 7318.528764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.086 3.914 4 C -0.129 4.129 5 C -0.090 4.090 6 C 0.542 3.458 7 O -0.549 6.549 8 N -0.697 5.697 9 C 0.263 3.737 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.097 4.097 21 C -0.122 4.122 22 C 0.081 3.919 23 F -0.132 7.132 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.151 0.849 28 H 0.389 0.611 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.015 0.985 32 H 0.266 0.734 33 H 0.142 0.858 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 -15.110 -1.177 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.040 3.960 4 C -0.148 4.148 5 C -0.094 4.094 6 C 0.326 3.674 7 O -0.429 6.429 8 N -0.345 5.345 9 C 0.162 3.838 10 H 0.069 0.931 11 C -0.206 4.206 12 C -0.575 4.575 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.116 4.116 21 C -0.141 4.141 22 C 0.061 3.939 23 F -0.111 7.111 24 H 0.121 0.879 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.169 0.831 28 H 0.223 0.777 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.160 0.840 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.632 -15.167 -1.194 15.904 hybrid contribution 0.888 0.748 0.370 1.218 sum 5.520 -14.420 -0.824 15.462 Atomic orbital electron populations 1.23165 0.77589 1.04186 1.02179 1.86110 1.22006 1.25437 1.88925 1.18849 0.90695 0.85641 1.00838 1.21268 1.01315 0.89965 1.02281 1.20204 0.93688 0.94231 1.01270 1.18085 0.87546 0.83558 0.78167 1.90735 1.13560 1.87307 1.51266 1.46513 1.10420 1.06491 1.71072 1.18822 0.91963 0.78817 0.94195 0.93122 1.22085 0.99608 1.01715 0.97194 1.21159 1.00830 0.93741 1.41745 0.92044 1.24880 0.95053 0.98593 0.95079 1.69889 1.14058 1.22423 1.45640 0.86488 0.79885 0.80940 0.79680 1.20112 1.21102 1.20141 1.21196 0.92615 0.98625 0.99135 1.20922 1.01167 0.89823 1.02192 1.17144 0.85924 0.82928 1.07873 1.91492 1.76610 1.48896 1.94108 0.87923 0.92091 0.92063 0.83119 0.77692 0.89005 0.95347 0.96574 0.92449 0.84020 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.98 10.36 -19.61 -0.20 -4.18 16 3 C 0.09 1.17 6.69 -39.24 -0.26 0.91 16 4 C -0.13 -1.87 8.58 -39.04 -0.33 -2.20 16 5 C -0.09 -1.41 5.87 -104.98 -0.62 -2.03 16 6 C 0.54 10.78 7.73 -12.38 -0.10 10.68 16 7 O -0.55 -12.88 16.00 5.30 0.08 -12.80 16 8 N -0.70 -14.19 5.02 -55.91 -0.28 -14.47 16 9 C 0.26 6.57 2.56 -69.08 -0.18 6.39 16 10 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 11 C -0.15 -3.60 9.26 37.16 0.34 -3.25 16 12 C -0.54 -13.87 8.73 -34.44 -0.30 -14.17 16 13 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 15 N -0.88 -24.42 11.32 55.43 0.63 -23.79 16 16 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.10 -1.22 9.53 -39.18 -0.37 -1.59 16 21 C -0.12 -1.39 10.00 -39.60 -0.40 -1.78 16 22 C 0.08 1.07 7.31 -39.16 -0.29 0.78 16 23 F -0.13 -1.78 17.10 2.25 0.04 -1.74 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 26 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 27 H 0.15 2.14 5.88 -52.49 -0.31 1.84 16 28 H 0.39 6.69 6.57 -40.82 -0.27 6.43 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.14 1.52 6.39 -52.48 -0.34 1.19 16 34 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -30.66 298.38 -5.51 -36.17 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.65 Total: 4.50 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.60 Total: -3.38 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.35 Total: -38.26 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.12 Total: -16.97 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.66 -5.51 -36.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129533244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.168 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds