Wall clock time and date at job start Mon Mar 30 2020 00:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 O 1.42902 * 109.46978 * 304.99724 * 4 2 1 6 6 C 1.35937 * 117.00111 * 180.02562 * 5 4 2 7 7 C 1.38709 * 120.03240 * 359.72517 * 6 5 4 8 8 C 1.38151 * 119.97327 * 179.78893 * 7 6 5 9 9 C 1.38452 * 120.02792 * 0.48691 * 8 7 6 10 10 F 1.35101 * 119.97043 * 179.72163 * 9 8 7 11 11 C 1.38450 * 120.06127 * 359.74390 * 9 8 7 12 12 C 1.38155 * 120.02945 * 0.02562 * 11 9 8 13 13 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 14 14 C 1.34768 * 120.00056 * 275.00296 * 13 2 1 15 15 O 1.21689 * 120.00265 * 359.97438 * 14 13 2 16 16 C 1.46376 * 120.00092 * 179.97438 * 14 13 2 17 17 H 1.08000 * 119.99969 * 359.97438 * 16 14 13 18 18 C 1.40054 * 120.00232 * 180.02562 * 16 14 13 19 19 N 1.30667 * 119.99693 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00196 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47178 * 89.99321 * 20 18 16 22 22 H 1.48496 * 109.46902 * 209.99869 * 20 18 16 23 23 H 1.48504 * 109.46776 * 329.99511 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 28 28 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 29 29 H 1.08003 * 120.01000 * 0.02562 * 7 6 5 30 30 H 1.07999 * 119.98699 * 180.20801 * 8 7 6 31 31 H 1.07999 * 119.98717 * 179.97438 * 11 9 8 32 32 H 1.08004 * 120.01162 * 179.97438 * 12 11 9 33 33 H 0.97001 * 119.99547 * 95.00125 * 13 2 1 34 34 H 0.97002 * 119.99990 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 1.4702 -2.0303 -1.3096 6 6 1.8235 -2.8091 -2.3662 7 6 2.6959 -2.3207 -3.3277 8 6 3.0575 -3.1148 -4.3988 9 6 2.5417 -4.3941 -4.5181 10 9 2.8918 -5.1676 -5.5689 11 6 1.6671 -4.8812 -3.5617 12 6 1.3075 -4.0909 -2.4871 13 7 2.0184 -0.6906 1.1961 14 6 2.1471 -0.0184 2.3570 15 8 1.8581 1.1624 2.4117 16 6 2.6346 -0.7085 3.5523 17 1 2.8907 -1.7566 3.5040 18 6 2.7678 -0.0101 4.7589 19 7 2.4574 1.2579 4.8175 20 14 3.3906 -0.8907 6.2841 21 1 4.8705 -0.7854 6.3468 22 1 2.7980 -0.2651 7.4934 23 1 2.9982 -2.3217 6.2242 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.7516 -0.1582 -2.1371 28 1 3.1264 -0.7994 -1.2057 29 1 3.0952 -1.3213 -3.2370 30 1 3.7394 -2.7359 -5.1457 31 1 1.2652 -5.8792 -3.6562 32 1 0.6249 -4.4711 -1.7414 33 1 2.2491 -1.6318 1.1525 34 1 2.5500 1.7418 5.6531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132716895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:09 Heat of formation + Delta-G solvation = -103.795165 kcal Electronic energy + Delta-G solvation = -19397.193524 eV Core-core repulsion = 16016.695549 eV Total energy + Delta-G solvation = -3380.497975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.95222 -40.21286 -37.96219 -36.92987 -34.13308 -32.38516 -31.43787 -30.15050 -29.21167 -26.61657 -26.08648 -23.30820 -22.47058 -21.04895 -19.41979 -18.38827 -17.42631 -17.34599 -16.57620 -15.96404 -15.56511 -15.34379 -14.94395 -14.72132 -14.13106 -13.92892 -13.74048 -13.32900 -13.00011 -12.86788 -12.50538 -12.27937 -12.23299 -11.61193 -11.39068 -11.12346 -10.99186 -10.84764 -10.59971 -10.57840 -10.41256 -10.20838 -9.37726 -8.86290 -8.19948 -7.64395 -7.54371 -6.19581 -4.64771 0.97497 1.07599 3.13718 3.16002 3.20941 3.24456 3.41764 4.09809 4.15374 4.49865 4.57228 4.59836 4.71973 4.92197 5.02660 5.18604 5.27136 5.35496 5.47244 5.68486 5.75475 5.93100 5.94723 5.97810 6.08184 6.12737 6.23424 6.51461 6.59475 6.86633 7.32592 7.43074 7.92958 8.08184 8.32719 9.02082 9.52564 10.58738 10.77171 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.003644 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.785854 B = 7682.608088 C = 8200.102970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.094 0.906 4 C 0.052 3.948 5 O -0.300 6.300 6 C 0.132 3.868 7 C -0.185 4.185 8 C -0.112 4.112 9 C 0.048 3.952 10 F -0.145 7.145 11 C -0.113 4.113 12 C -0.127 4.127 13 N -0.760 5.760 14 C 0.556 3.444 15 O -0.581 6.581 16 C -0.545 4.545 17 H 0.067 0.933 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.384 0.616 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 -9.168 -15.812 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.112 0.888 4 C -0.024 4.024 5 O -0.213 6.213 6 C 0.085 3.915 7 C -0.203 4.203 8 C -0.131 4.131 9 C 0.029 3.971 10 F -0.124 7.124 11 C -0.132 4.132 12 C -0.145 4.145 13 N -0.416 5.416 14 C 0.360 3.640 15 O -0.465 6.465 16 C -0.582 4.582 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.216 0.784 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.727 -8.161 -15.523 17.553 hybrid contribution 0.662 -0.882 0.358 1.159 sum -0.065 -9.043 -15.165 17.657 Atomic orbital electron populations 1.22111 0.96196 1.01812 1.01447 1.20597 0.94186 0.96545 0.83675 0.88802 1.23386 0.98189 0.80934 0.99851 1.86182 1.66614 1.26741 1.41722 1.19128 0.93624 0.91319 0.87401 1.21190 1.01771 1.01635 0.95746 1.20918 1.00509 0.92587 0.99042 1.17556 1.01434 0.90516 0.87609 1.91474 1.91098 1.74621 1.55226 1.20937 0.97842 1.00804 0.93577 1.20332 1.02929 0.91839 0.99444 1.46179 1.73017 1.13066 1.09300 1.18214 0.77785 0.86367 0.81659 1.90593 1.54993 1.16432 1.84434 1.20892 1.46830 0.97148 0.93316 0.91459 1.25703 0.93313 0.94474 0.99706 1.70017 1.35164 1.08207 1.26304 0.86381 0.79315 0.80278 0.80838 1.19767 1.20472 1.18902 0.91725 0.92450 0.93475 0.91398 0.91387 0.84378 0.84687 0.84263 0.84033 0.78446 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.29 37.16 0.35 -2.37 16 2 C 0.16 2.82 2.98 -67.93 -0.20 2.62 16 3 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 4 C 0.05 0.70 4.48 37.16 0.17 0.87 16 5 O -0.30 -4.18 8.99 -19.54 -0.18 -4.36 16 6 C 0.13 1.61 6.69 -39.24 -0.26 1.35 16 7 C -0.18 -1.99 9.04 -39.44 -0.36 -2.35 16 8 C -0.11 -1.14 10.02 -39.53 -0.40 -1.54 16 9 C 0.05 0.52 7.30 -39.42 -0.29 0.24 16 10 F -0.15 -1.66 17.27 2.25 0.04 -1.62 16 11 C -0.11 -1.13 10.02 -39.53 -0.40 -1.53 16 12 C -0.13 -1.39 9.98 -39.44 -0.39 -1.78 16 13 N -0.76 -16.57 5.06 -55.22 -0.28 -16.85 16 14 C 0.56 15.47 7.71 -12.99 -0.10 15.37 16 15 O -0.58 -18.32 14.68 5.20 0.08 -18.24 16 16 C -0.54 -15.28 9.54 -35.63 -0.34 -15.62 16 17 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 18 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 19 N -0.77 -22.85 11.83 55.55 0.66 -22.19 16 20 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.06 0.96 7.56 -51.93 -0.39 0.57 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.75 7.65 -51.93 -0.40 0.36 16 28 H 0.07 0.88 7.67 -51.93 -0.40 0.49 16 29 H 0.14 1.29 6.30 -52.48 -0.33 0.96 16 30 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 33 H 0.38 7.68 8.36 -40.82 -0.34 7.34 16 34 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -33.25 302.95 -6.37 -39.62 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.91 Total: 6.44 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.32 Total: -2.41 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.38 Total: -39.04 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.10 Total: -22.60 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.25 -6.37 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132716895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.175 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds