Wall clock time and date at job start Mon Mar 30 2020 00:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 O 1.42902 * 109.46978 * 304.99724 * 4 2 1 6 6 C 1.35937 * 117.00111 * 180.02562 * 5 4 2 7 7 C 1.38709 * 120.03240 * 359.72517 * 6 5 4 8 8 C 1.38151 * 119.97327 * 179.78893 * 7 6 5 9 9 C 1.38452 * 120.02792 * 0.48691 * 8 7 6 10 10 F 1.35101 * 119.97043 * 179.72163 * 9 8 7 11 11 C 1.38450 * 120.06127 * 359.74390 * 9 8 7 12 12 C 1.38155 * 120.02945 * 0.02562 * 11 9 8 13 13 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 14 14 C 1.34768 * 120.00056 * 275.00296 * 13 2 1 15 15 O 1.21689 * 120.00265 * 359.97438 * 14 13 2 16 16 C 1.46376 * 120.00092 * 179.97438 * 14 13 2 17 17 H 1.08000 * 119.99969 * 359.97438 * 16 14 13 18 18 C 1.40054 * 120.00232 * 180.02562 * 16 14 13 19 19 N 1.30667 * 119.99693 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00196 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47178 * 89.99321 * 20 18 16 22 22 H 1.48496 * 109.46902 * 209.99869 * 20 18 16 23 23 H 1.48504 * 109.46776 * 329.99511 * 20 18 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 28 28 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 29 29 H 1.08003 * 120.01000 * 0.02562 * 7 6 5 30 30 H 1.07999 * 119.98699 * 180.20801 * 8 7 6 31 31 H 1.07999 * 119.98717 * 179.97438 * 11 9 8 32 32 H 1.08004 * 120.01162 * 179.97438 * 12 11 9 33 33 H 0.97001 * 119.99547 * 95.00125 * 13 2 1 34 34 H 0.97002 * 119.99990 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 1.4702 -2.0303 -1.3096 6 6 1.8235 -2.8091 -2.3662 7 6 2.6959 -2.3207 -3.3277 8 6 3.0575 -3.1148 -4.3988 9 6 2.5417 -4.3941 -4.5181 10 9 2.8918 -5.1676 -5.5689 11 6 1.6671 -4.8812 -3.5617 12 6 1.3075 -4.0909 -2.4871 13 7 2.0184 -0.6906 1.1961 14 6 2.1471 -0.0184 2.3570 15 8 1.8581 1.1624 2.4117 16 6 2.6346 -0.7085 3.5523 17 1 2.8907 -1.7566 3.5040 18 6 2.7678 -0.0101 4.7589 19 7 2.4574 1.2579 4.8175 20 14 3.3906 -0.8907 6.2841 21 1 4.8705 -0.7854 6.3468 22 1 2.7980 -0.2651 7.4934 23 1 2.9982 -2.3217 6.2242 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.7516 -0.1582 -2.1371 28 1 3.1264 -0.7994 -1.2057 29 1 3.0952 -1.3213 -3.2370 30 1 3.7394 -2.7359 -5.1457 31 1 1.2652 -5.8792 -3.6562 32 1 0.6249 -4.4711 -1.7414 33 1 2.2491 -1.6318 1.1525 34 1 2.5500 1.7418 5.6531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132716895.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:08 Heat of formation + Delta-G solvation = -126.245043 kcal Electronic energy + Delta-G solvation = -19398.167024 eV Core-core repulsion = 16016.695549 eV Total energy + Delta-G solvation = -3381.471475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.80024 -41.17421 -39.57545 -38.23252 -35.83075 -34.50050 -32.28133 -31.76670 -30.20155 -28.17128 -27.78761 -24.24169 -23.43108 -22.60664 -21.09725 -19.43031 -19.15565 -18.32084 -17.62881 -17.44438 -16.97287 -16.49542 -16.13801 -15.99749 -15.61748 -15.11842 -14.83657 -14.58679 -14.38573 -14.23633 -13.88313 -13.59902 -13.38036 -13.21562 -12.92363 -12.70790 -12.61023 -12.48021 -12.03341 -11.98271 -11.78421 -11.68858 -10.92078 -10.16082 -9.83313 -9.45915 -9.08100 -8.27686 -6.83689 0.18983 0.22862 1.40819 1.42004 1.57138 2.14274 2.25760 2.49725 2.59700 3.10585 3.34608 3.62803 3.66395 3.83123 3.88745 4.10378 4.16268 4.30939 4.37582 4.44525 4.59716 4.69511 4.85837 4.93803 5.07001 5.14254 5.17272 5.25803 5.33274 5.39345 5.73235 5.90692 6.24859 6.29865 6.41045 6.88794 7.56942 8.51492 8.69317 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.003644 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.785854 B = 7682.608088 C = 8200.102970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.149 3.851 3 H 0.073 0.927 4 C 0.065 3.935 5 O -0.316 6.316 6 C 0.112 3.888 7 C -0.185 4.185 8 C -0.112 4.112 9 C 0.037 3.963 10 F -0.150 7.150 11 C -0.110 4.110 12 C -0.133 4.133 13 N -0.749 5.749 14 C 0.542 3.458 15 O -0.629 6.629 16 C -0.576 4.576 17 H 0.083 0.917 18 C 0.030 3.970 19 N -0.821 5.821 20 Si 0.995 3.005 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.251 1.251 24 H 0.022 0.978 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.394 0.606 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -10.929 -16.578 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.091 0.909 4 C -0.010 4.010 5 O -0.229 6.229 6 C 0.067 3.933 7 C -0.204 4.204 8 C -0.131 4.131 9 C 0.017 3.983 10 F -0.129 7.129 11 C -0.129 4.129 12 C -0.151 4.151 13 N -0.403 5.403 14 C 0.346 3.654 15 O -0.516 6.516 16 C -0.612 4.612 17 H 0.102 0.898 18 C -0.185 4.185 19 N -0.450 5.450 20 Si 0.815 3.185 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.174 1.174 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.178 0.822 32 H 0.167 0.833 33 H 0.227 0.773 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.101 -9.969 -16.349 19.149 hybrid contribution 0.438 -0.376 0.462 0.740 sum 0.337 -10.345 -15.887 18.961 Atomic orbital electron populations 1.21999 0.95588 1.01969 1.01030 1.20760 0.94672 0.96011 0.84164 0.90875 1.23146 0.98311 0.81270 0.98277 1.86123 1.67113 1.26799 1.42904 1.19334 0.94828 0.91673 0.87515 1.21356 1.01302 1.02358 0.95384 1.21158 1.00436 0.92259 0.99223 1.17797 1.01829 0.90914 0.87722 1.91465 1.91175 1.74775 1.55450 1.21155 0.97279 1.01593 0.92843 1.20502 1.03085 0.91635 0.99921 1.45859 1.71920 1.13334 1.09163 1.18510 0.77508 0.86015 0.83409 1.90549 1.56992 1.18408 1.85647 1.21439 1.47384 0.98141 0.94266 0.89845 1.26925 0.92814 0.95152 1.03624 1.70176 1.36605 1.10470 1.27785 0.85052 0.78893 0.79150 0.75404 1.18591 1.19812 1.17449 0.95824 0.91891 0.90137 0.88144 0.90665 0.82937 0.82718 0.82201 0.83300 0.77300 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.29 71.98 0.67 -4.42 16 2 C 0.15 5.38 2.98 44.99 0.13 5.52 16 3 H 0.07 2.96 7.58 -2.39 -0.02 2.94 16 4 C 0.07 1.65 4.48 71.98 0.32 1.97 16 5 O -0.32 -8.22 8.99 -92.84 -0.83 -9.06 16 6 C 0.11 2.51 6.69 22.49 0.15 2.67 16 7 C -0.19 -3.53 9.04 22.36 0.20 -3.33 16 8 C -0.11 -2.01 10.02 22.30 0.22 -1.78 16 9 C 0.04 0.72 7.30 22.37 0.16 0.88 16 10 F -0.15 -3.13 17.27 44.97 0.78 -2.35 16 11 C -0.11 -1.98 10.02 22.30 0.22 -1.75 16 12 C -0.13 -2.66 9.98 22.36 0.22 -2.44 16 13 N -0.75 -33.00 5.06 -446.83 -2.26 -35.26 16 14 C 0.54 31.03 7.71 86.36 0.67 31.70 16 15 O -0.63 -41.34 14.68 -4.31 -0.06 -41.41 16 16 C -0.58 -32.68 9.54 24.83 0.24 -32.44 16 17 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 18 C 0.03 1.67 5.50 85.31 0.47 2.14 16 19 N -0.82 -50.13 11.83 21.84 0.26 -49.87 16 20 Si 1.00 41.03 29.56 68.60 2.03 43.06 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 24 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 2.08 7.56 -2.39 -0.02 2.06 16 26 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.10 1.92 7.65 -2.39 -0.02 1.90 16 28 H 0.08 1.80 7.67 -2.38 -0.02 1.79 16 29 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.39 15.67 8.36 -92.71 -0.78 14.90 16 34 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 Total: -1.00 -74.28 302.95 3.94 -70.34 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.35 Total: 25.83 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 3.68 Total: -1.29 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.00 Total: -85.13 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -0.90 Total: -50.46 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -74.28 3.94 -70.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132716895.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.904 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds