Wall clock time and date at job start Mon Mar 30 2020 00:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47195 * 2 1 4 4 C 1.46499 * 120.00045 * 264.66789 * 3 2 1 5 5 C 1.50703 * 109.47165 * 270.10106 * 4 3 2 6 6 H 1.08000 * 119.99479 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99845 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99994 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99723 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47187 * 59.99713 * 9 7 5 11 11 H 1.48491 * 109.47119 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46784 * 299.99930 * 9 7 5 13 13 C 1.34781 * 119.99965 * 84.66667 * 3 2 1 14 14 O 1.21277 * 120.00059 * 4.03112 * 13 3 2 15 15 C 1.50700 * 119.99722 * 184.02904 * 13 3 2 16 16 H 1.08998 * 109.47235 * 314.03376 * 15 13 3 17 17 C 1.53004 * 109.47160 * 74.03819 * 15 13 3 18 18 C 1.50708 * 109.46909 * 194.03342 * 15 13 3 19 19 C 1.38422 * 122.53813 * 120.00003 * 18 15 13 20 20 C 1.33384 * 114.92158 * 179.97438 * 19 18 15 21 21 S 1.75884 * 109.59425 * 0.02562 * 20 19 18 22 22 C 1.33382 * 122.53947 * 299.71395 * 18 15 13 23 23 H 1.09006 * 109.47201 * 300.00058 * 1 2 3 24 24 H 1.09003 * 109.47139 * 59.99961 * 1 2 3 25 25 H 1.08997 * 109.47600 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46720 * 239.99853 * 2 1 3 27 27 H 1.08997 * 109.46831 * 119.99758 * 2 1 3 28 28 H 1.09004 * 109.47269 * 30.10094 * 4 3 2 29 29 H 1.09001 * 109.47061 * 150.10535 * 4 3 2 30 30 H 0.97006 * 119.99374 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.46704 * 63.91110 * 17 15 13 32 32 H 1.08999 * 109.46796 * 183.91041 * 17 15 13 33 33 H 1.09001 * 109.46782 * 303.91217 * 17 15 13 34 34 H 1.08006 * 122.53906 * 359.95652 * 19 18 15 35 35 H 1.08003 * 125.20195 * 179.97438 * 20 19 18 36 36 H 1.08001 * 125.20757 * 0.02700 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3737 2.0325 -1.2632 5 6 3.8287 1.7822 -1.5656 6 1 4.4287 1.1968 -0.8846 7 6 4.3940 2.3013 -2.7110 8 7 3.6636 3.0153 -3.5394 9 14 6.1973 1.9904 -3.0862 10 1 6.4345 0.5288 -3.1996 11 1 6.5575 2.6506 -4.3665 12 1 7.0333 2.5440 -1.9907 13 6 2.1407 2.0527 1.1622 14 8 1.9167 1.4911 2.2135 15 6 2.5559 3.5014 1.1552 16 1 3.4038 3.6331 0.4831 17 6 1.3868 4.3647 0.6767 18 6 2.9502 3.9176 2.5490 19 6 4.2159 4.3867 2.8558 20 6 4.3994 4.7125 4.1362 21 16 2.9161 4.4246 5.0365 22 6 2.1045 3.8671 3.5791 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7603 1.6254 -2.0671 29 1 2.1992 3.1053 -1.1806 30 1 4.0613 3.3802 -4.3454 31 1 0.5633 4.2868 1.3867 32 1 1.7080 5.4038 0.6053 33 1 1.0564 4.0183 -0.3025 34 1 4.9958 4.4816 2.1147 35 1 5.3185 5.0938 4.5560 36 1 1.0789 3.5327 3.5269 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133407489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:28 Heat of formation + Delta-G solvation = -25.365389 kcal Electronic energy + Delta-G solvation = -18628.597162 eV Core-core repulsion = 15817.713333 eV Total energy + Delta-G solvation = -2810.883829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23158 -38.82148 -36.82952 -34.76844 -34.15275 -31.70224 -29.61337 -28.86619 -26.32259 -24.89352 -24.79642 -22.91049 -20.23291 -19.28160 -18.66858 -18.59333 -17.57254 -17.12458 -16.33830 -16.16188 -15.56254 -14.99850 -14.91821 -14.39733 -14.08736 -13.92255 -13.64337 -13.61617 -13.41407 -13.21521 -13.08584 -12.92104 -12.69071 -12.61448 -12.40878 -12.26146 -12.12564 -11.79309 -11.65496 -11.56141 -10.67736 -10.44942 -9.61827 -9.43389 -9.21914 -8.19433 -6.33725 0.16763 0.82043 1.09455 1.42185 1.43179 1.50664 1.72587 1.85698 2.35848 2.51597 3.10421 3.75807 3.87721 4.13511 4.24514 4.35070 4.41849 4.43995 4.54564 4.56475 4.75489 4.81989 4.85839 4.94363 4.95831 5.06349 5.11259 5.18478 5.27187 5.35912 5.48256 5.67781 5.68188 5.90055 6.08619 6.59240 6.83360 7.32404 7.43941 8.85470 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.006728 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.790171 B = 4160.928314 C = 5172.461362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.109 3.891 3 N -0.599 5.599 4 C 0.244 3.756 5 C -0.550 4.550 6 H 0.047 0.953 7 C 0.026 3.974 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.272 1.272 13 C 0.520 3.480 14 O -0.586 6.586 15 C -0.049 4.049 16 H 0.095 0.905 17 C -0.128 4.128 18 C -0.103 4.103 19 C -0.145 4.145 20 C -0.211 4.211 21 S 0.107 5.893 22 C -0.186 4.186 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.047 0.953 30 H 0.268 0.732 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.142 0.858 35 H 0.191 0.809 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 3.274 10.384 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 N -0.329 5.329 4 C 0.123 3.877 5 C -0.589 4.589 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.197 1.197 13 C 0.308 3.692 14 O -0.468 6.468 15 C -0.072 4.072 16 H 0.113 0.887 17 C -0.186 4.186 18 C -0.115 4.115 19 C -0.175 4.175 20 C -0.346 4.346 21 S 0.370 5.630 22 C -0.321 4.321 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.160 0.840 35 H 0.208 0.792 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.076 3.247 12.252 13.043 hybrid contribution 1.401 -0.524 -2.194 2.655 sum -1.675 2.723 10.059 10.554 Atomic orbital electron populations 1.21999 0.94594 1.02965 1.01302 1.21378 0.95219 0.82832 1.01963 1.48240 1.62958 1.13941 1.07774 1.19295 0.94313 0.94053 0.79991 1.21654 0.96356 1.33874 1.06995 0.93470 1.25571 1.01796 0.94496 0.95596 1.69985 1.37757 1.34995 1.12763 0.85712 0.80517 0.78445 0.77665 1.20017 1.20451 1.19666 1.20652 0.76232 0.89345 0.82929 1.90553 1.53760 1.70724 1.31735 1.19896 1.01271 0.91592 0.94463 0.88659 1.21744 0.95910 0.99755 1.01175 1.18584 0.94368 1.03305 0.95219 1.20242 0.97103 1.02641 0.97509 1.25808 1.02919 1.09215 0.96610 1.83810 1.04487 1.63439 1.11269 1.25406 1.04062 1.06991 0.95666 0.93714 0.92715 0.89579 0.90554 0.92002 0.96222 0.93516 0.92241 0.91791 0.90227 0.92012 0.84003 0.79189 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.20 71.98 0.73 -3.92 16 2 C 0.11 4.07 6.11 86.38 0.53 4.60 16 3 N -0.60 -25.52 2.47 -826.16 -2.04 -27.56 16 4 C 0.24 11.54 4.62 85.63 0.40 11.93 16 5 C -0.55 -28.63 9.09 25.60 0.23 -28.39 16 6 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 7 C 0.03 1.36 5.46 84.66 0.46 1.83 16 8 N -0.92 -49.57 13.29 21.45 0.28 -49.28 16 9 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.52 21.96 6.82 87.66 0.60 22.56 16 14 O -0.59 -26.46 14.60 -3.02 -0.04 -26.50 16 15 C -0.05 -1.83 2.12 -12.28 -0.03 -1.85 16 16 H 0.10 3.97 7.02 -2.39 -0.02 3.95 16 17 C -0.13 -4.17 8.70 71.98 0.63 -3.54 16 18 C -0.10 -3.52 4.42 -20.92 -0.09 -3.61 16 19 C -0.14 -4.45 9.92 21.21 0.21 -4.24 16 20 C -0.21 -5.34 11.23 66.72 0.75 -4.59 16 21 S 0.11 2.72 23.34 -56.49 -1.32 1.40 16 22 C -0.19 -5.90 9.03 66.72 0.60 -5.29 16 23 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.08 2.83 8.03 -2.39 -0.02 2.81 16 27 H 0.06 2.37 7.53 -2.39 -0.02 2.35 16 28 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 29 H 0.05 2.23 4.55 -2.39 -0.01 2.22 16 30 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 31 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.14 6.06 -2.39 -0.01 2.12 16 34 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 35 H 0.19 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.16 4.98 7.72 -2.91 -0.02 4.95 16 Total: -1.00 -59.18 313.66 4.99 -54.19 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 1.06 Total: 18.73 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.02 Total: -14.52 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -1.75 Total: -76.84 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.04 Total: -26.50 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.32 Total: 1.40 kcal Total: -59.18 4.99 -54.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133407489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.825 kcal (2) G-P(sol) polarization free energy of solvation -59.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds