Wall clock time and date at job start Mon Mar 30 2020 00:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46932 * 2 1 4 4 C 1.46497 * 119.99739 * 264.56412 * 3 2 1 5 5 C 1.50696 * 109.47280 * 273.64603 * 4 3 2 6 6 H 1.08001 * 119.99832 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00226 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99898 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00171 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47441 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47338 * 119.99913 * 9 7 5 12 12 H 1.48504 * 109.46882 * 239.99874 * 9 7 5 13 13 C 1.34775 * 119.99922 * 84.56685 * 3 2 1 14 14 O 1.21275 * 120.00203 * 5.85723 * 13 3 2 15 15 C 1.50701 * 119.99800 * 185.86154 * 13 3 2 16 16 H 1.08993 * 109.47055 * 35.30472 * 15 13 3 17 17 C 1.52997 * 109.46923 * 275.30260 * 15 13 3 18 18 C 1.50703 * 109.47083 * 155.30303 * 15 13 3 19 19 C 1.38416 * 122.53948 * 239.99832 * 18 15 13 20 20 C 1.33393 * 114.91826 * 179.72995 * 19 18 15 21 21 S 1.75884 * 109.59484 * 0.27050 * 20 19 18 22 22 C 1.33394 * 122.53816 * 60.25781 * 18 15 13 23 23 H 1.09006 * 109.46680 * 184.65952 * 1 2 3 24 24 H 1.09000 * 109.46899 * 304.65379 * 1 2 3 25 25 H 1.08989 * 109.47248 * 64.65726 * 1 2 3 26 26 H 1.09002 * 109.47154 * 240.00066 * 2 1 3 27 27 H 1.08997 * 109.47090 * 119.99959 * 2 1 3 28 28 H 1.09002 * 109.47305 * 33.64982 * 4 3 2 29 29 H 1.09001 * 109.47014 * 153.64806 * 4 3 2 30 30 H 0.96993 * 119.99926 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.47044 * 173.51756 * 17 15 13 32 32 H 1.09003 * 109.47632 * 293.51657 * 17 15 13 33 33 H 1.09002 * 109.47402 * 53.52100 * 17 15 13 34 34 H 1.07998 * 122.54053 * 359.97438 * 19 18 15 35 35 H 1.08000 * 125.20125 * 180.24984 * 20 19 18 36 36 H 1.08001 * 125.20593 * 359.96621 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3758 2.0317 -1.2630 5 6 3.8071 1.7091 -1.6068 6 1 4.3919 1.0819 -0.9503 7 6 4.3701 2.2147 -2.7594 8 7 3.6578 2.9781 -3.5591 9 14 6.1441 1.8142 -3.1858 10 1 6.7220 0.9425 -2.1316 11 1 6.1923 1.1102 -4.4924 12 1 6.9285 3.0723 -3.2722 13 6 2.1387 2.0534 1.1620 14 8 1.9453 1.4837 2.2149 15 6 2.5137 3.5130 1.1527 16 1 2.0633 3.9983 0.2869 17 6 4.0359 3.6480 1.0787 18 6 2.0119 4.1685 2.4135 19 6 1.1153 5.2229 2.3984 20 6 0.7691 5.6836 3.6014 21 16 1.6057 4.7664 4.8474 22 6 2.4021 3.7799 3.6285 23 1 -0.3633 -1.0243 0.0835 24 1 -0.3633 0.5844 0.8454 25 1 -0.3633 0.4398 -0.9287 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7212 1.6700 -2.0560 29 1 2.2610 3.1109 -1.1611 30 1 4.0537 3.3335 -4.3701 31 1 4.3019 4.6980 0.9560 32 1 4.4798 3.2658 1.9979 33 1 4.4105 3.0767 0.2293 34 1 0.7226 5.6385 1.4822 35 1 0.0807 6.4958 3.7826 36 1 3.0970 2.9787 3.8326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133407668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:31 Heat of formation + Delta-G solvation = -11.677274 kcal Electronic energy + Delta-G solvation = -18623.609972 eV Core-core repulsion = 15813.319704 eV Total energy + Delta-G solvation = -2810.290268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66759 -37.50421 -35.11963 -33.07011 -32.43925 -30.20349 -28.32029 -27.06310 -24.88244 -23.43423 -23.02038 -21.52636 -18.83185 -17.86803 -17.42028 -16.48281 -16.12302 -15.61735 -14.65727 -14.46552 -14.19437 -13.50618 -13.17460 -12.93053 -12.74681 -12.51651 -12.33571 -12.06186 -11.87223 -11.64888 -11.55273 -11.41788 -11.05153 -10.93832 -10.91750 -10.73238 -10.49096 -10.27423 -10.06998 -9.72450 -8.92772 -8.56842 -8.46744 -8.08989 -7.69231 -6.21479 -4.27843 1.32542 1.93283 2.24215 2.98873 3.19426 3.28659 3.31890 3.46951 4.01835 4.31533 5.09945 5.12309 5.33404 5.44112 5.63640 5.66291 5.73864 5.84605 5.89916 5.91493 5.99736 6.24008 6.28184 6.35939 6.44099 6.48563 6.65454 6.69687 6.79111 6.86867 7.01270 7.20180 7.56050 7.73890 8.03272 8.37118 8.77549 9.04918 9.39217 10.85024 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.005999 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.950062 B = 4666.301331 C = 5366.742494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.595 5.595 4 C 0.234 3.766 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.524 3.476 14 O -0.569 6.569 15 C -0.045 4.045 16 H 0.102 0.898 17 C -0.144 4.144 18 C -0.094 4.094 19 C -0.119 4.119 20 C -0.223 4.223 21 S 0.061 5.939 22 C -0.162 4.162 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.159 0.841 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 3.081 9.176 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.325 5.325 4 C 0.114 3.886 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.311 3.689 14 O -0.450 6.450 15 C -0.069 4.069 16 H 0.120 0.880 17 C -0.202 4.202 18 C -0.105 4.105 19 C -0.150 4.150 20 C -0.358 4.358 21 S 0.323 5.677 22 C -0.297 4.297 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.169 2.929 11.112 12.224 hybrid contribution 0.868 -0.165 -2.074 2.255 sum -3.301 2.764 9.037 10.010 Atomic orbital electron populations 1.22111 0.97014 1.01179 1.01807 1.21202 0.93181 0.83936 1.02376 1.48206 1.62761 1.13184 1.08348 1.19509 0.95880 0.93708 0.79528 1.21487 0.96960 1.31716 1.07074 0.91930 1.24932 0.98135 0.94755 0.95894 1.69927 1.36622 1.33127 1.13081 0.86509 0.84561 0.78372 0.78495 1.19611 1.20862 1.20758 1.20266 0.76427 0.88701 0.83480 1.90566 1.52990 1.70144 1.31268 1.19919 0.98841 0.92925 0.95194 0.88031 1.21894 0.91710 1.02738 1.03820 1.18652 0.99333 0.97694 0.94835 1.20130 0.99058 0.97514 0.98330 1.25383 1.08174 1.06666 0.95602 1.84032 1.41987 1.29983 1.11686 1.25428 1.06024 1.03705 0.94552 0.92499 0.92869 0.92715 0.90346 0.91430 0.94847 0.94010 0.92544 0.92400 0.93307 0.88191 0.84341 0.82294 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.20 37.16 0.38 -2.25 16 2 C 0.12 2.17 6.14 -4.04 -0.02 2.15 16 3 N -0.59 -12.43 2.47 -175.06 -0.43 -12.86 16 4 C 0.23 5.37 4.85 -5.20 -0.03 5.35 16 5 C -0.53 -13.31 7.26 -34.44 -0.25 -13.56 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -23.76 13.29 55.43 0.74 -23.03 16 9 Si 0.89 20.01 29.54 -169.99 -5.02 14.98 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.52 10.88 6.72 -10.99 -0.07 10.81 16 14 O -0.57 -12.71 14.50 5.56 0.08 -12.62 16 15 C -0.05 -0.84 2.19 -92.92 -0.20 -1.04 16 16 H 0.10 1.89 6.14 -51.93 -0.32 1.57 16 17 C -0.14 -2.62 9.04 37.16 0.34 -2.28 16 18 C -0.09 -1.59 4.53 -106.25 -0.48 -2.07 16 19 C -0.12 -1.78 9.92 -41.21 -0.41 -2.19 16 20 C -0.22 -2.95 11.23 29.04 0.33 -2.62 16 21 S 0.06 0.83 23.34 -107.50 -2.51 -1.68 16 22 C -0.16 -2.66 9.02 29.04 0.26 -2.40 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.87 8.14 -51.94 -0.42 0.45 16 26 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 27 H 0.07 1.28 7.51 -51.93 -0.39 0.88 16 28 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.04 0.98 5.70 -51.93 -0.30 0.69 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.84 7.50 -51.93 -0.39 0.45 16 33 H 0.10 2.07 5.57 -51.93 -0.29 1.78 16 34 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.16 2.78 7.49 -52.49 -0.39 2.38 16 LS Contribution 311.84 15.07 4.70 4.70 Total: -1.00 -27.59 311.84 -7.70 -35.29 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.00 Total: 3.73 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.26 Total: -8.52 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.30 Total: -35.89 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.59 -7.70 -35.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133407668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.616 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds