Wall clock time and date at job start Mon Mar 30 2020 00:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46932 * 2 1 4 4 C 1.46497 * 119.99739 * 264.56412 * 3 2 1 5 5 C 1.50696 * 109.47280 * 273.64603 * 4 3 2 6 6 H 1.08001 * 119.99832 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00226 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99898 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00171 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47441 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47338 * 119.99913 * 9 7 5 12 12 H 1.48504 * 109.46882 * 239.99874 * 9 7 5 13 13 C 1.34775 * 119.99922 * 84.56685 * 3 2 1 14 14 O 1.21275 * 120.00203 * 5.85723 * 13 3 2 15 15 C 1.50701 * 119.99800 * 185.86154 * 13 3 2 16 16 H 1.08993 * 109.47055 * 35.30472 * 15 13 3 17 17 C 1.52997 * 109.46923 * 275.30260 * 15 13 3 18 18 C 1.50703 * 109.47083 * 155.30303 * 15 13 3 19 19 C 1.38416 * 122.53948 * 239.99832 * 18 15 13 20 20 C 1.33393 * 114.91826 * 179.72995 * 19 18 15 21 21 S 1.75884 * 109.59484 * 0.27050 * 20 19 18 22 22 C 1.33394 * 122.53816 * 60.25781 * 18 15 13 23 23 H 1.09006 * 109.46680 * 184.65952 * 1 2 3 24 24 H 1.09000 * 109.46899 * 304.65379 * 1 2 3 25 25 H 1.08989 * 109.47248 * 64.65726 * 1 2 3 26 26 H 1.09002 * 109.47154 * 240.00066 * 2 1 3 27 27 H 1.08997 * 109.47090 * 119.99959 * 2 1 3 28 28 H 1.09002 * 109.47305 * 33.64982 * 4 3 2 29 29 H 1.09001 * 109.47014 * 153.64806 * 4 3 2 30 30 H 0.96993 * 119.99926 * 180.02562 * 8 7 5 31 31 H 1.09007 * 109.47044 * 173.51756 * 17 15 13 32 32 H 1.09003 * 109.47632 * 293.51657 * 17 15 13 33 33 H 1.09002 * 109.47402 * 53.52100 * 17 15 13 34 34 H 1.07998 * 122.54053 * 359.97438 * 19 18 15 35 35 H 1.08000 * 125.20125 * 180.24984 * 20 19 18 36 36 H 1.08001 * 125.20593 * 359.96621 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3758 2.0317 -1.2630 5 6 3.8071 1.7091 -1.6068 6 1 4.3919 1.0819 -0.9503 7 6 4.3701 2.2147 -2.7594 8 7 3.6578 2.9781 -3.5591 9 14 6.1441 1.8142 -3.1858 10 1 6.7220 0.9425 -2.1316 11 1 6.1923 1.1102 -4.4924 12 1 6.9285 3.0723 -3.2722 13 6 2.1387 2.0534 1.1620 14 8 1.9453 1.4837 2.2149 15 6 2.5137 3.5130 1.1527 16 1 2.0633 3.9983 0.2869 17 6 4.0359 3.6480 1.0787 18 6 2.0119 4.1685 2.4135 19 6 1.1153 5.2229 2.3984 20 6 0.7691 5.6836 3.6014 21 16 1.6057 4.7664 4.8474 22 6 2.4021 3.7799 3.6285 23 1 -0.3633 -1.0243 0.0835 24 1 -0.3633 0.5844 0.8454 25 1 -0.3633 0.4398 -0.9287 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7212 1.6700 -2.0560 29 1 2.2610 3.1109 -1.1611 30 1 4.0537 3.3335 -4.3701 31 1 4.3019 4.6980 0.9560 32 1 4.4798 3.2658 1.9979 33 1 4.4105 3.0767 0.2293 34 1 0.7226 5.6385 1.4822 35 1 0.0807 6.4958 3.7826 36 1 3.0970 2.9787 3.8326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133407668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:31 Heat of formation + Delta-G solvation = -25.412613 kcal Electronic energy + Delta-G solvation = -18624.205581 eV Core-core repulsion = 15813.319704 eV Total energy + Delta-G solvation = -2810.885877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22746 -38.82377 -36.83638 -34.79054 -34.04287 -31.70642 -29.57335 -28.92237 -26.28201 -24.91784 -24.79605 -22.88994 -20.22514 -19.32085 -18.72719 -18.38561 -17.69723 -17.16775 -16.36108 -15.97651 -15.70673 -14.96563 -14.59317 -14.42527 -14.29964 -13.92704 -13.75168 -13.42926 -13.27619 -13.17499 -13.08685 -13.02394 -12.68632 -12.62686 -12.42003 -12.25051 -12.07352 -11.78179 -11.66017 -11.51466 -10.66247 -10.44096 -9.62322 -9.43667 -9.22464 -8.17904 -6.30054 0.16909 0.81193 1.10414 1.41132 1.45492 1.54701 1.72358 1.84631 2.37399 2.51053 3.12386 3.78102 3.89299 4.14757 4.24888 4.31629 4.40547 4.46001 4.54061 4.57566 4.76376 4.83354 4.91748 4.95217 4.99503 5.07012 5.17998 5.21724 5.30843 5.43203 5.50344 5.67224 5.69968 5.89491 6.08845 6.60755 6.84635 7.33169 7.44546 8.87890 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.005999 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.950062 B = 4666.301331 C = 5366.742494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.110 3.890 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.026 3.974 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.519 3.481 14 O -0.586 6.586 15 C -0.042 4.042 16 H 0.097 0.903 17 C -0.136 4.136 18 C -0.106 4.106 19 C -0.142 4.142 20 C -0.208 4.208 21 S 0.102 5.898 22 C -0.188 4.188 23 H 0.086 0.914 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.036 0.964 30 H 0.267 0.733 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.194 0.806 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 3.763 9.976 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.574 4.574 6 H 0.070 0.930 7 C -0.174 4.174 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.308 3.692 14 O -0.468 6.468 15 C -0.065 4.065 16 H 0.115 0.885 17 C -0.194 4.194 18 C -0.118 4.118 19 C -0.172 4.172 20 C -0.343 4.343 21 S 0.365 5.635 22 C -0.324 4.324 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.169 0.831 35 H 0.211 0.789 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.526 3.602 11.921 13.250 hybrid contribution 0.943 -0.387 -2.242 2.463 sum -3.582 3.215 9.679 10.810 Atomic orbital electron populations 1.22003 0.94856 1.02855 1.01189 1.21370 0.94973 0.82812 1.02145 1.48256 1.62894 1.14038 1.07770 1.19182 0.94695 0.93388 0.79922 1.21580 0.97678 1.31239 1.06862 0.93011 1.25551 1.01386 0.94665 0.95839 1.70004 1.38081 1.34057 1.13551 0.85626 0.80572 0.78169 0.78057 1.19661 1.20574 1.20279 1.20673 0.75890 0.89616 0.83028 1.90545 1.53787 1.70811 1.31664 1.19852 0.98889 0.91497 0.96293 0.88509 1.21788 0.91631 1.03252 1.02742 1.18668 1.00417 0.98651 0.94062 1.20238 0.99589 0.97681 0.99734 1.25834 1.07281 1.06460 0.94727 1.83874 1.40779 1.28598 1.10262 1.25451 1.06738 1.04404 0.95797 0.89546 0.94136 0.92676 0.90300 0.91852 0.96323 0.94594 0.92347 0.90826 0.92868 0.90858 0.83149 0.78908 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.75 10.20 71.98 0.73 -4.01 16 2 C 0.11 4.09 6.14 86.38 0.53 4.62 16 3 N -0.60 -25.41 2.47 -826.16 -2.04 -27.45 16 4 C 0.25 11.65 4.85 85.63 0.42 12.06 16 5 C -0.54 -26.97 7.26 25.60 0.19 -26.79 16 6 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 7 C 0.03 1.34 5.46 84.65 0.46 1.80 16 8 N -0.92 -49.17 13.29 21.45 0.28 -48.89 16 9 Si 0.95 40.97 29.54 68.60 2.03 42.99 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.52 21.86 6.72 87.66 0.59 22.45 16 14 O -0.59 -26.44 14.50 -3.02 -0.04 -26.48 16 15 C -0.04 -1.56 2.19 -12.29 -0.03 -1.59 16 16 H 0.10 3.66 6.14 -2.39 -0.01 3.64 16 17 C -0.14 -5.01 9.04 71.98 0.65 -4.35 16 18 C -0.11 -3.53 4.53 -20.92 -0.09 -3.62 16 19 C -0.14 -4.00 9.92 21.22 0.21 -3.79 16 20 C -0.21 -4.87 11.23 66.72 0.75 -4.12 16 21 S 0.10 2.55 23.34 -56.49 -1.32 1.23 16 22 C -0.19 -6.08 9.02 66.72 0.60 -5.48 16 23 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 2.89 8.03 -2.39 -0.02 2.87 16 27 H 0.06 2.40 7.51 -2.39 -0.02 2.38 16 28 H 0.02 0.93 8.10 -2.39 -0.02 0.91 16 29 H 0.04 1.73 5.70 -2.39 -0.01 1.72 16 30 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 31 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.05 1.85 7.50 -2.39 -0.02 1.84 16 33 H 0.07 3.09 5.57 -2.39 -0.01 3.07 16 34 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 35 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.15 5.18 7.49 -2.91 -0.02 5.15 16 Total: -1.00 -58.02 311.84 4.98 -53.03 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.07 Total: 18.38 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 5.01 Total: -12.82 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -1.75 Total: -76.33 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.04 Total: -26.48 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.32 Total: 1.23 kcal Total: -58.02 4.98 -53.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133407668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.621 kcal (2) G-P(sol) polarization free energy of solvation -58.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds