Wall clock time and date at job start Mon Mar 30 2020 00:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47368 * 2 1 4 4 C 1.46496 * 120.00129 * 269.30811 * 3 2 1 5 5 C 1.50694 * 109.47182 * 273.58688 * 4 3 2 6 6 H 1.08003 * 120.00492 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99995 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47379 * 59.99580 * 9 7 5 11 11 H 1.48502 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47190 * 299.99425 * 9 7 5 13 13 C 1.34779 * 119.99823 * 89.30511 * 3 2 1 14 14 O 1.21278 * 119.99706 * 5.01540 * 13 3 2 15 15 C 1.50691 * 120.00119 * 184.73355 * 13 3 2 16 16 H 1.09009 * 109.46993 * 33.19956 * 15 13 3 17 17 C 1.53002 * 109.47384 * 273.20421 * 15 13 3 18 18 C 1.50700 * 109.47410 * 153.20260 * 15 13 3 19 19 C 1.33389 * 125.20388 * 240.00200 * 18 15 13 20 20 C 1.38423 * 114.92153 * 179.97438 * 19 18 15 21 21 C 1.33394 * 114.92047 * 0.02562 * 20 19 18 22 22 S 1.75880 * 125.20010 * 59.69375 * 18 15 13 23 23 H 1.08998 * 109.47205 * 183.90841 * 1 2 3 24 24 H 1.09001 * 109.47164 * 303.91651 * 1 2 3 25 25 H 1.09008 * 109.47095 * 63.91101 * 1 2 3 26 26 H 1.09001 * 109.47433 * 240.00015 * 2 1 3 27 27 H 1.08998 * 109.47422 * 120.00498 * 2 1 3 28 28 H 1.09003 * 109.47015 * 33.58294 * 4 3 2 29 29 H 1.08998 * 109.47238 * 153.58596 * 4 3 2 30 30 H 0.96998 * 120.00707 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47110 * 305.18141 * 17 15 13 32 32 H 1.09000 * 109.47186 * 65.18137 * 17 15 13 33 33 H 1.09004 * 109.47232 * 185.17994 * 17 15 13 34 34 H 1.07995 * 122.53615 * 0.02562 * 19 18 15 35 35 H 1.07996 * 122.54337 * 180.02562 * 20 19 18 36 36 H 1.07993 * 125.20114 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2770 2.0668 -1.2686 5 6 3.6773 1.7564 -1.7309 6 1 4.3114 1.1132 -1.1388 7 6 4.1494 2.2944 -2.9094 8 7 3.3775 3.0781 -3.6302 9 14 5.8849 1.9091 -3.4828 10 1 6.0291 0.4437 -3.6744 11 1 6.1475 2.6051 -4.7681 12 1 6.8581 2.3730 -2.4616 13 6 2.2296 2.0213 1.1672 14 8 2.1032 1.4264 2.2164 15 6 2.6292 3.4743 1.1682 16 1 2.1591 3.9809 0.3252 17 6 4.1503 3.5851 1.0459 18 6 2.1805 4.1178 2.4548 19 6 1.3382 5.1481 2.5464 20 6 1.0712 5.5702 3.8374 21 6 1.6972 4.8831 4.7942 22 16 2.6814 3.6204 4.0657 23 1 -0.3633 -1.0253 0.0700 24 1 -0.3633 0.5734 0.8528 25 1 -0.3634 0.4520 -0.9230 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5629 1.7255 -2.0181 29 1 2.1706 3.1425 -1.1286 30 1 3.7094 3.4563 -4.4594 31 1 4.6218 3.0016 1.8366 32 1 4.4656 3.2029 0.0750 33 1 4.4471 4.6298 1.1389 34 1 0.8972 5.6167 1.6791 35 1 0.4066 6.3935 4.0537 36 1 1.6096 5.0707 5.8541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133410169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:25 Heat of formation + Delta-G solvation = -11.251826 kcal Electronic energy + Delta-G solvation = -18558.999645 eV Core-core repulsion = 15748.727826 eV Total energy + Delta-G solvation = -2810.271819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.44422 -37.39836 -35.22254 -33.56361 -32.67060 -30.28111 -28.13081 -27.09357 -24.48888 -23.41789 -23.05072 -21.55901 -19.01758 -18.48630 -16.74863 -16.37531 -16.31285 -15.36080 -15.02217 -14.53170 -14.27649 -13.57628 -13.16977 -13.00190 -12.70385 -12.44040 -12.31658 -11.93861 -11.86731 -11.70340 -11.59467 -11.46891 -11.04921 -10.97529 -10.91349 -10.69659 -10.46306 -10.24217 -10.09916 -9.77651 -9.08307 -8.58867 -8.28695 -7.99839 -7.73087 -6.22411 -4.29358 1.33036 2.02608 2.44640 3.02325 3.21542 3.27148 3.28442 3.39600 3.94298 4.30180 5.04716 5.10917 5.27645 5.30110 5.61617 5.67462 5.71223 5.82591 5.84882 5.87088 5.91339 6.25298 6.27302 6.36484 6.41788 6.45839 6.58999 6.64416 6.77026 6.79060 6.90708 7.16464 7.51782 7.72242 8.01286 8.32221 8.74788 8.98442 9.37748 10.84053 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.006318 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.265013 B = 4430.731744 C = 5086.945462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.592 5.592 4 C 0.234 3.766 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.521 3.479 14 O -0.564 6.564 15 C -0.039 4.039 16 H 0.112 0.888 17 C -0.144 4.144 18 C -0.145 4.145 19 C -0.155 4.155 20 C -0.134 4.134 21 C -0.246 4.246 22 S 0.151 5.849 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.081 2.466 9.486 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.322 5.322 4 C 0.114 3.886 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.308 3.692 14 O -0.445 6.445 15 C -0.062 4.062 16 H 0.130 0.870 17 C -0.202 4.202 18 C -0.263 4.263 19 C -0.185 4.185 20 C -0.166 4.166 21 C -0.382 4.382 22 S 0.416 5.584 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.206 1.124 10.408 10.698 hybrid contribution -0.117 1.041 -1.140 1.548 sum -2.323 2.165 9.268 9.797 Atomic orbital electron populations 1.22109 0.96928 1.01205 1.01855 1.21227 0.93268 0.83802 1.02535 1.48193 1.62962 1.13446 1.07610 1.19504 0.96761 0.93028 0.79285 1.21417 0.98600 1.30707 1.06783 0.92013 1.24930 0.97832 0.94726 0.96178 1.69903 1.36427 1.31709 1.14716 0.86606 0.84385 0.78710 0.78122 1.20121 1.21125 1.19975 1.20206 0.76716 0.88598 0.83706 1.90600 1.54149 1.68181 1.31533 1.19830 0.99294 0.93494 0.93564 0.86979 1.21885 0.91264 1.01998 1.05038 1.24295 1.03376 1.00781 0.97859 1.20069 1.01179 0.99113 0.98139 1.20003 1.02611 1.01993 0.91976 1.25732 1.06810 1.02601 1.03047 1.84388 1.45864 1.30626 0.97534 0.92434 0.92940 0.92616 0.90385 0.91095 0.94718 0.94106 0.92396 0.93046 0.88056 0.92177 0.84613 0.85050 0.82637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.24 37.15 0.38 -2.24 16 2 C 0.12 2.14 6.17 -4.04 -0.02 2.11 16 3 N -0.59 -12.37 2.46 -175.07 -0.43 -12.80 16 4 C 0.23 5.37 4.95 -5.20 -0.03 5.35 16 5 C -0.54 -13.35 7.50 -34.44 -0.26 -13.61 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -23.72 13.29 55.43 0.74 -22.98 16 9 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.52 10.87 6.75 -10.99 -0.07 10.79 16 14 O -0.56 -12.59 14.62 5.56 0.08 -12.51 16 15 C -0.04 -0.73 2.37 -92.93 -0.22 -0.95 16 16 H 0.11 2.11 6.04 -51.92 -0.31 1.80 16 17 C -0.14 -2.63 9.06 37.16 0.34 -2.30 16 18 C -0.14 -2.51 4.90 -36.00 -0.18 -2.69 16 19 C -0.15 -2.40 10.01 -41.21 -0.41 -2.81 16 20 C -0.13 -1.85 10.18 -41.21 -0.42 -2.27 16 21 C -0.25 -3.37 11.23 29.04 0.33 -3.04 16 22 S 0.15 2.45 21.81 -107.50 -2.34 0.10 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 26 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 27 H 0.07 1.33 7.38 -51.93 -0.38 0.95 16 28 H 0.03 0.84 8.10 -51.93 -0.42 0.42 16 29 H 0.04 0.96 5.66 -51.93 -0.29 0.67 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 2.08 5.98 -51.93 -0.31 1.77 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 314.06 15.07 4.73 4.73 Total: -1.00 -27.61 314.06 -7.98 -35.59 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.07 Total: 2.95 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.67 Total: -10.05 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.31 Total: -35.78 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.34 Total: 0.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.61 -7.98 -35.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133410169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.339 kcal (2) G-P(sol) polarization free energy of solvation -27.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds