Wall clock time and date at job start Mon Mar 30 2020 00:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47368 * 2 1 4 4 C 1.46496 * 120.00129 * 269.30811 * 3 2 1 5 5 C 1.50694 * 109.47182 * 273.58688 * 4 3 2 6 6 H 1.08003 * 120.00492 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99995 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47379 * 59.99580 * 9 7 5 11 11 H 1.48502 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47190 * 299.99425 * 9 7 5 13 13 C 1.34779 * 119.99823 * 89.30511 * 3 2 1 14 14 O 1.21278 * 119.99706 * 5.01540 * 13 3 2 15 15 C 1.50691 * 120.00119 * 184.73355 * 13 3 2 16 16 H 1.09009 * 109.46993 * 33.19956 * 15 13 3 17 17 C 1.53002 * 109.47384 * 273.20421 * 15 13 3 18 18 C 1.50700 * 109.47410 * 153.20260 * 15 13 3 19 19 C 1.33389 * 125.20388 * 240.00200 * 18 15 13 20 20 C 1.38423 * 114.92153 * 179.97438 * 19 18 15 21 21 C 1.33394 * 114.92047 * 0.02562 * 20 19 18 22 22 S 1.75880 * 125.20010 * 59.69375 * 18 15 13 23 23 H 1.08998 * 109.47205 * 183.90841 * 1 2 3 24 24 H 1.09001 * 109.47164 * 303.91651 * 1 2 3 25 25 H 1.09008 * 109.47095 * 63.91101 * 1 2 3 26 26 H 1.09001 * 109.47433 * 240.00015 * 2 1 3 27 27 H 1.08998 * 109.47422 * 120.00498 * 2 1 3 28 28 H 1.09003 * 109.47015 * 33.58294 * 4 3 2 29 29 H 1.08998 * 109.47238 * 153.58596 * 4 3 2 30 30 H 0.96998 * 120.00707 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47110 * 305.18141 * 17 15 13 32 32 H 1.09000 * 109.47186 * 65.18137 * 17 15 13 33 33 H 1.09004 * 109.47232 * 185.17994 * 17 15 13 34 34 H 1.07995 * 122.53615 * 0.02562 * 19 18 15 35 35 H 1.07996 * 122.54337 * 180.02562 * 20 19 18 36 36 H 1.07993 * 125.20114 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2770 2.0668 -1.2686 5 6 3.6773 1.7564 -1.7309 6 1 4.3114 1.1132 -1.1388 7 6 4.1494 2.2944 -2.9094 8 7 3.3775 3.0781 -3.6302 9 14 5.8849 1.9091 -3.4828 10 1 6.0291 0.4437 -3.6744 11 1 6.1475 2.6051 -4.7681 12 1 6.8581 2.3730 -2.4616 13 6 2.2296 2.0213 1.1672 14 8 2.1032 1.4264 2.2164 15 6 2.6292 3.4743 1.1682 16 1 2.1591 3.9809 0.3252 17 6 4.1503 3.5851 1.0459 18 6 2.1805 4.1178 2.4548 19 6 1.3382 5.1481 2.5464 20 6 1.0712 5.5702 3.8374 21 6 1.6972 4.8831 4.7942 22 16 2.6814 3.6204 4.0657 23 1 -0.3633 -1.0253 0.0700 24 1 -0.3633 0.5734 0.8528 25 1 -0.3634 0.4520 -0.9230 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5629 1.7255 -2.0181 29 1 2.1706 3.1425 -1.1286 30 1 3.7094 3.4563 -4.4594 31 1 4.6218 3.0016 1.8366 32 1 4.4656 3.2029 0.0750 33 1 4.4471 4.6298 1.1389 34 1 0.8972 5.6167 1.6791 35 1 0.4066 6.3935 4.0537 36 1 1.6096 5.0707 5.8541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133410169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:25 Heat of formation + Delta-G solvation = -24.839904 kcal Electronic energy + Delta-G solvation = -18559.588868 eV Core-core repulsion = 15748.727826 eV Total energy + Delta-G solvation = -2810.861042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05412 -38.61400 -36.92385 -35.07087 -34.49990 -31.80159 -29.38620 -28.95642 -25.91227 -24.95301 -24.69695 -22.95494 -20.20399 -20.06521 -18.53217 -18.03054 -17.83906 -16.86311 -16.37553 -16.23253 -15.87429 -15.05827 -14.57566 -14.49915 -14.34072 -13.85913 -13.58393 -13.39621 -13.27115 -13.20437 -13.10289 -13.05613 -12.69245 -12.64274 -12.45691 -12.22639 -12.07704 -11.79880 -11.66912 -11.46347 -10.74216 -10.49492 -9.53493 -9.43798 -9.22914 -8.18540 -6.31278 0.14597 0.82732 1.27756 1.43687 1.45118 1.51839 1.72950 1.88895 2.33106 2.47129 3.11817 3.69236 3.73691 4.15290 4.22134 4.29592 4.31646 4.40290 4.53722 4.69650 4.74480 4.81421 4.84712 4.90976 4.97258 5.06228 5.19134 5.25434 5.29369 5.34929 5.47509 5.65167 5.68274 5.86064 6.07293 6.57190 6.81820 7.28793 7.41664 8.86897 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.006318 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.265013 B = 4430.731744 C = 5086.945462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.109 3.891 3 N -0.597 5.597 4 C 0.249 3.751 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.027 3.973 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.516 3.484 14 O -0.580 6.580 15 C -0.034 4.034 16 H 0.106 0.894 17 C -0.135 4.135 18 C -0.177 4.177 19 C -0.148 4.148 20 C -0.140 4.140 21 C -0.226 4.226 22 S 0.111 5.889 23 H 0.087 0.913 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.020 0.980 29 H 0.035 0.965 30 H 0.268 0.732 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 3.166 10.437 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.174 4.174 8 N -0.556 5.556 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.304 3.696 14 O -0.462 6.462 15 C -0.056 4.056 16 H 0.124 0.876 17 C -0.193 4.193 18 C -0.295 4.295 19 C -0.179 4.179 20 C -0.170 4.170 21 C -0.362 4.362 22 S 0.376 5.624 23 H 0.105 0.895 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.165 0.835 35 H 0.183 0.817 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.530 1.813 11.364 11.782 hybrid contribution -0.072 0.838 -1.366 1.604 sum -2.602 2.651 9.998 10.666 Atomic orbital electron populations 1.22004 0.94791 1.02917 1.01196 1.21390 0.95042 0.82669 1.02291 1.48243 1.63162 1.14270 1.07019 1.19175 0.95501 0.92755 0.79714 1.21534 0.99236 1.30243 1.06698 0.92953 1.25553 1.00938 0.94604 0.96291 1.69986 1.37898 1.32638 1.15120 0.85737 0.80602 0.78440 0.77723 1.19941 1.20771 1.19569 1.20612 0.76232 0.89506 0.83284 1.90579 1.54845 1.68848 1.31887 1.19707 0.99259 0.92078 0.94584 0.87607 1.21769 0.91242 1.02953 1.03324 1.24179 1.05598 1.02304 0.97375 1.20416 0.99764 0.98036 0.99660 1.20328 1.02971 1.02808 0.90918 1.26098 1.04885 1.00585 1.04625 1.84472 1.47411 1.32709 0.97846 0.89464 0.94041 0.92766 0.90422 0.91447 0.96206 0.94710 0.92309 0.93242 0.90553 0.90343 0.83465 0.81710 0.79408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 10.24 71.98 0.74 -4.00 16 2 C 0.11 4.04 6.17 86.38 0.53 4.58 16 3 N -0.60 -25.30 2.46 -826.18 -2.03 -27.32 16 4 C 0.25 11.66 4.95 85.63 0.42 12.08 16 5 C -0.54 -27.11 7.50 25.60 0.19 -26.92 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 7 C 0.03 1.37 5.46 84.66 0.46 1.83 16 8 N -0.92 -49.15 13.29 21.45 0.28 -48.86 16 9 Si 0.95 40.85 29.54 68.60 2.03 42.88 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 C 0.52 21.79 6.75 87.65 0.59 22.38 16 14 O -0.58 -26.11 14.62 -3.02 -0.04 -26.15 16 15 C -0.03 -1.27 2.37 -12.29 -0.03 -1.30 16 16 H 0.11 4.06 6.04 -2.38 -0.01 4.04 16 17 C -0.14 -4.99 9.06 71.98 0.65 -4.34 16 18 C -0.18 -6.01 4.90 24.59 0.12 -5.89 16 19 C -0.15 -4.31 10.01 21.22 0.21 -4.10 16 20 C -0.14 -3.39 10.18 21.22 0.22 -3.18 16 21 C -0.23 -5.52 11.23 66.72 0.75 -4.78 16 22 S 0.11 3.50 21.81 -56.49 -1.23 2.27 16 23 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.08 2.85 8.07 -2.39 -0.02 2.83 16 27 H 0.07 2.54 7.38 -2.39 -0.02 2.52 16 28 H 0.02 0.98 8.10 -2.39 -0.02 0.96 16 29 H 0.04 1.68 5.66 -2.39 -0.01 1.66 16 30 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 3.19 5.98 -2.39 -0.01 3.18 16 33 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 36 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -58.34 314.06 4.93 -53.41 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.06 Total: 17.40 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.86 Total: -13.62 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -1.74 Total: -76.19 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.04 Total: -26.15 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.23 Total: 2.27 kcal Total: -58.34 4.93 -53.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133410169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.570 kcal (2) G-P(sol) polarization free energy of solvation -58.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds