Wall clock time and date at job start Mon Mar 30 2020 00:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35974 * 116.99492 * 2 1 4 4 C 1.38315 * 119.99142 * 359.72852 * 3 2 1 5 5 C 1.39610 * 119.81497 * 179.72992 * 4 3 2 6 6 C 1.47730 * 120.09683 * 180.25222 * 5 4 3 7 7 O 1.21572 * 120.00127 * 0.30837 * 6 5 4 8 8 N 1.34777 * 119.99987 * 180.32007 * 6 5 4 9 9 C 1.46506 * 120.00016 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47071 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46703 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00350 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99617 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00093 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99921 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46731 * 89.99909 * 15 13 11 17 17 H 1.48498 * 109.47272 * 209.99647 * 15 13 11 18 18 H 1.48497 * 109.47200 * 330.00526 * 15 13 11 19 19 C 1.39650 * 119.80332 * 0.56159 * 5 4 3 20 20 C 1.37889 * 119.98365 * 359.71024 * 19 5 4 21 21 C 1.38522 * 120.18028 * 359.97438 * 20 19 5 22 22 F 1.35098 * 119.90387 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47382 * 59.99808 * 1 2 3 24 24 H 1.09001 * 109.46938 * 299.99795 * 1 2 3 25 25 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.09368 * 0.02562 * 4 3 2 27 27 H 0.96996 * 120.00057 * 359.97438 * 8 6 5 28 28 H 1.08993 * 109.46860 * 299.99582 * 9 8 6 29 29 H 1.09003 * 109.47127 * 59.99453 * 9 8 6 30 30 H 1.08993 * 109.47545 * 299.99907 * 10 9 8 31 31 H 1.09003 * 109.46983 * 60.00110 * 10 9 8 32 32 H 0.96999 * 119.99817 * 179.97438 * 14 13 11 33 33 H 1.08002 * 120.00376 * 179.68616 * 19 5 4 34 34 H 1.08001 * 119.90626 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2926 2.3714 -0.0057 5 6 1.9301 3.6134 0.0001 6 6 1.1313 4.8562 -0.0003 7 8 -0.0830 4.7982 0.0000 8 7 1.7488 6.0542 -0.0013 9 6 0.9566 7.2866 -0.0023 10 6 1.8943 8.4956 -0.0026 11 6 1.0794 9.7632 -0.0042 12 1 0.0006 9.7117 -0.0045 13 6 1.7111 10.9888 -0.0054 14 7 3.0247 11.0515 -0.0055 15 14 0.7010 12.5602 -0.0081 16 1 0.4324 12.9783 1.3914 17 1 1.4538 13.6313 -0.7089 18 1 -0.5862 12.3200 -0.7086 19 6 3.3252 3.6776 -0.0004 20 6 4.0684 2.5162 -0.0004 21 6 3.4352 1.2842 0.0005 22 9 4.1689 0.1498 -0.0001 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2141 2.3164 -0.0097 27 1 2.7177 6.1004 -0.0014 28 1 0.3280 7.3137 -0.8922 29 1 0.3279 7.3150 0.8877 30 1 2.5227 8.4683 0.8875 31 1 2.5233 8.4673 -0.8924 32 1 3.4690 11.9138 -0.0067 33 1 3.8217 4.6367 -0.0011 34 1 5.1472 2.5673 -0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134120142.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:39 Heat of formation + Delta-G solvation = -102.801185 kcal Electronic energy + Delta-G solvation = -19147.817796 eV Core-core repulsion = 15767.362923 eV Total energy + Delta-G solvation = -3380.454873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.04148 -40.50675 -39.20812 -37.28786 -35.02086 -32.95446 -31.24273 -30.69826 -29.43438 -27.61430 -25.12949 -23.54150 -22.72928 -21.14442 -20.48246 -18.73691 -17.53884 -17.04666 -16.53328 -16.42874 -16.40522 -15.30352 -15.18048 -14.99999 -14.80369 -14.53006 -14.51024 -13.60937 -13.27993 -13.07822 -13.01542 -12.43904 -12.33511 -11.96918 -11.51715 -11.40430 -11.24519 -11.06908 -10.68248 -10.39916 -9.97756 -9.57900 -9.29206 -9.23056 -8.68073 -8.50625 -8.39208 -6.13249 -4.16301 0.49201 0.95319 2.75828 2.81818 3.27177 3.33290 3.36359 3.47006 3.66014 3.91211 4.38143 4.41197 4.66184 4.76708 4.82952 4.90738 4.95144 5.19071 5.24058 5.24662 5.56904 5.64893 5.84795 5.98209 6.21777 6.27099 6.31126 6.65458 6.77308 6.93114 7.45504 7.55398 7.83746 7.86717 8.21913 8.46912 8.89432 9.48841 10.98333 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039687 B = 0.003296 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.343059 B = 8492.452592 C = 9172.045829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.086 3.914 4 C -0.127 4.127 5 C -0.097 4.097 6 C 0.548 3.452 7 O -0.545 6.545 8 N -0.712 5.712 9 C 0.120 3.880 10 C 0.012 3.988 11 C -0.523 4.523 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.094 4.094 20 C -0.121 4.121 21 C 0.087 3.913 22 F -0.130 7.130 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.152 0.848 27 H 0.398 0.602 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.262 0.738 33 H 0.143 0.857 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -19.848 0.002 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.040 3.960 4 C -0.146 4.146 5 C -0.100 4.100 6 C 0.334 3.666 7 O -0.424 6.424 8 N -0.362 5.362 9 C -0.002 4.002 10 C -0.026 4.026 11 C -0.562 4.562 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.113 4.113 20 C -0.140 4.140 21 C 0.067 3.933 22 F -0.109 7.109 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.169 0.831 27 H 0.233 0.767 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.161 0.839 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.358 -19.951 -0.004 19.954 hybrid contribution -0.037 0.894 0.011 0.895 sum 0.321 -19.056 0.007 19.059 Atomic orbital electron populations 1.23179 0.77506 1.04339 1.02119 1.86131 1.22065 1.25307 1.88844 1.18850 0.90716 0.85678 1.00739 1.21248 1.01307 0.89919 1.02142 1.19999 0.93635 0.93767 1.02613 1.18110 0.87472 0.83500 0.77517 1.90753 1.13587 1.87404 1.50647 1.46286 1.10890 1.06226 1.72773 1.21811 0.95081 0.82165 1.01097 1.19339 0.94721 0.90555 0.97952 1.21036 0.93234 0.90354 1.51530 0.92202 1.24994 0.94972 0.99367 0.94919 1.69948 1.07678 1.25362 1.50251 0.86504 0.80175 0.82615 0.78222 1.20539 1.21150 1.19711 1.21197 0.92464 0.98790 0.98870 1.20954 1.01379 0.89745 1.01915 1.17178 0.85940 0.83011 1.07174 1.91508 1.76567 1.48810 1.93980 0.92077 0.92069 0.87807 0.83064 0.76683 0.92220 0.92228 0.95840 0.95830 0.92795 0.83915 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.54 10.36 -19.66 -0.20 -3.74 16 3 C 0.09 1.04 6.69 -39.24 -0.26 0.78 16 4 C -0.13 -1.58 8.58 -39.04 -0.33 -1.92 16 5 C -0.10 -1.29 5.87 -104.98 -0.62 -1.91 16 6 C 0.55 9.18 7.77 -12.38 -0.10 9.08 16 7 O -0.54 -10.88 16.34 5.30 0.09 -10.80 16 8 N -0.71 -11.97 5.51 -61.28 -0.34 -12.31 16 9 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 10 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 11 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 12 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 15 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.09 -1.02 9.53 -39.18 -0.37 -1.39 16 20 C -0.12 -1.20 10.00 -39.60 -0.40 -1.60 16 21 C 0.09 1.02 7.31 -39.16 -0.29 0.73 16 22 F -0.13 -1.60 17.10 2.25 0.04 -1.56 16 23 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 24 H 0.06 0.44 7.67 -51.93 -0.40 0.05 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.15 1.83 5.88 -52.49 -0.31 1.52 16 27 H 0.40 5.65 6.50 -40.82 -0.27 5.39 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.14 1.27 6.39 -52.49 -0.34 0.94 16 34 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 303.20 15.07 4.57 4.57 Total: -1.00 -31.77 303.20 -5.86 -37.64 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.78 Total: 0.52 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.95 Total: -5.43 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.40 Total: -37.21 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.12 Total: -14.54 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.77 -5.86 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134120142.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.164 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds