Wall clock time and date at job start Mon Mar 30 2020 00:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34715 * 116.99980 * 2 1 4 4 O 1.21478 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.47731 * 120.00228 * 180.02562 * 3 2 1 6 6 C 1.39649 * 120.13702 * 359.97222 * 5 3 2 7 7 C 1.37923 * 119.90168 * 180.02562 * 6 5 3 8 8 C 1.38359 * 120.17661 * 359.72448 * 7 6 5 9 9 C 1.50703 * 119.85871 * 180.27411 * 8 7 6 10 10 N 1.46500 * 109.46957 * 260.27637 * 9 8 7 11 11 C 1.46502 * 120.00190 * 270.00040 * 10 9 8 12 12 C 1.36936 * 119.99766 * 90.00827 * 10 9 8 13 13 H 1.07999 * 120.00420 * 22.14564 * 12 10 9 14 14 C 1.38820 * 119.99721 * 202.15083 * 12 10 9 15 15 N 1.31617 * 120.00135 * 11.26331 * 14 12 10 16 16 Si 1.86797 * 119.99702 * 191.26998 * 14 12 10 17 17 H 1.48491 * 109.47307 * 59.99652 * 16 14 12 18 18 H 1.48506 * 109.47105 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46928 * 299.99277 * 16 14 12 20 20 C 1.38554 * 120.27479 * 0.55602 * 8 7 6 21 21 F 1.35101 * 119.94574 * 179.72458 * 20 8 7 22 22 C 1.38192 * 120.10267 * 359.44339 * 20 8 7 23 23 H 1.09001 * 109.47313 * 60.00568 * 1 2 3 24 24 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47493 * 299.99915 * 1 2 3 26 26 H 1.08005 * 120.04734 * 0.04900 * 6 5 3 27 27 H 1.07993 * 119.91284 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47126 * 20.27834 * 9 8 7 29 29 H 1.08997 * 109.46900 * 140.27839 * 9 8 7 30 30 H 1.08994 * 109.47093 * 94.50275 * 11 10 9 31 31 H 1.08997 * 109.46872 * 214.51074 * 11 10 9 32 32 H 1.09007 * 109.46706 * 334.50514 * 11 10 9 33 33 H 0.96999 * 120.00051 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.09500 * 180.25440 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.3022 0.1084 -0.0005 7 6 5.6793 0.1863 -0.0005 8 6 6.3061 1.4197 -0.0063 9 6 7.8112 1.4965 -0.0125 10 7 8.2924 1.7579 1.3462 11 6 8.4684 3.1370 1.8083 12 6 8.5777 0.7133 2.1844 13 1 8.7985 -0.2619 1.7761 14 6 8.5832 0.9078 3.5589 15 7 8.1031 2.0226 4.0677 16 14 9.2721 -0.4128 4.6862 17 1 10.6988 -0.6539 4.3522 18 1 9.1635 0.0354 6.0978 19 1 8.5020 -1.6695 4.5048 20 6 5.5559 2.5845 -0.0006 21 9 6.1749 3.7854 -0.0006 22 6 4.1754 2.5199 -0.0006 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.8150 -0.8556 -0.0009 27 1 6.2698 -0.7179 -0.0001 28 1 8.2217 0.5513 -0.3678 29 1 8.1311 2.3026 -0.6727 30 1 7.5709 3.4610 2.3350 31 1 9.3236 3.1879 2.4822 32 1 8.6418 3.7879 0.9513 33 1 8.1073 2.1587 5.0281 34 1 3.5908 3.4279 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135360499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:20 Heat of formation + Delta-G solvation = -79.379361 kcal Electronic energy + Delta-G solvation = -20126.861322 eV Core-core repulsion = 16747.422095 eV Total energy + Delta-G solvation = -3379.439227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.31948 -40.39346 -38.42744 -36.38343 -35.59318 -32.29919 -30.54927 -30.23837 -27.98497 -26.29323 -25.86087 -23.19781 -22.30710 -21.24158 -20.29048 -18.11242 -17.17764 -16.75237 -16.31543 -15.74975 -15.58589 -15.37755 -15.19418 -14.57404 -13.69419 -13.58751 -13.43649 -13.37718 -13.21696 -12.87734 -12.29657 -12.15215 -11.75758 -11.45296 -11.32008 -10.93928 -10.85433 -10.83094 -10.72685 -10.40517 -10.32803 -10.12215 -10.01437 -8.68224 -8.63694 -8.28048 -6.94164 -5.87324 -3.28916 0.89138 1.60451 2.68554 2.70866 3.31823 3.37164 3.37937 3.97565 4.39743 4.71157 4.87820 5.01455 5.09128 5.09439 5.24929 5.32822 5.40123 5.47447 5.56292 5.67178 6.01709 6.07587 6.27610 6.41027 6.42626 6.48050 6.57896 6.76173 6.87433 7.23068 7.31854 7.64001 7.72718 7.81243 8.23151 9.06865 9.68053 10.17005 11.15832 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.005552 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.779671 B = 5041.656569 C = 5695.510225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.516 3.484 4 O -0.514 6.514 5 C -0.133 4.133 6 C -0.070 4.070 7 C -0.100 4.100 8 C -0.076 4.076 9 C 0.173 3.827 10 N -0.582 5.582 11 C 0.161 3.839 12 C -0.257 4.257 13 H 0.074 0.926 14 C 0.005 3.995 15 N -0.897 5.897 16 Si 0.910 3.090 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.281 1.281 20 C 0.093 3.907 21 F -0.134 7.134 22 C -0.092 4.092 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.004 0.996 33 H 0.257 0.743 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 -3.840 -9.130 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.362 3.638 4 O -0.404 6.404 5 C -0.135 4.135 6 C -0.089 4.089 7 C -0.120 4.120 8 C -0.083 4.083 9 C 0.046 3.954 10 N -0.301 5.301 11 C 0.017 3.983 12 C -0.386 4.386 13 H 0.092 0.908 14 C -0.195 4.195 15 N -0.539 5.539 16 Si 0.739 3.261 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.207 1.207 20 C 0.073 3.927 21 F -0.112 7.112 22 C -0.112 4.112 23 H 0.080 0.920 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.067 0.933 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.168 -3.408 -8.884 13.214 hybrid contribution -0.089 -0.354 0.994 1.058 sum -9.258 -3.761 -7.891 12.733 Atomic orbital electron populations 1.23243 0.76371 1.03540 1.02510 1.86551 1.23228 1.32839 1.84541 1.21201 0.89120 0.81187 0.72302 1.90805 1.66898 1.36065 1.46624 1.18504 0.88400 0.94249 1.12358 1.21365 0.93989 0.97420 0.96139 1.20845 0.93571 0.97342 1.00199 1.21667 1.00789 0.91499 0.94297 1.20121 0.85740 1.00437 0.89079 1.44332 1.71403 1.03751 1.10605 1.20910 1.00656 0.82274 0.94450 1.19286 1.40455 0.91593 0.87255 0.90845 1.25155 0.99579 0.97536 0.97228 1.70078 1.46655 1.25460 1.11712 0.86252 0.79078 0.80999 0.79748 1.20774 1.21475 1.20690 1.17206 0.89646 0.81026 1.04867 1.91484 1.82873 1.42891 1.93976 1.20976 0.92891 0.97874 0.99421 0.91975 0.88114 0.91916 0.84741 0.84684 0.91781 0.92595 0.95062 0.93333 0.97782 0.93290 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.80 9.82 -40.53 -0.40 -5.19 16 3 C 0.52 8.29 7.90 34.61 0.27 8.56 16 4 O -0.51 -9.23 16.14 -19.25 -0.31 -9.54 16 5 C -0.13 -2.22 5.87 -104.99 -0.62 -2.83 16 6 C -0.07 -1.09 9.62 -39.17 -0.38 -1.47 16 7 C -0.10 -1.68 9.65 -39.65 -0.38 -2.06 16 8 C -0.08 -1.45 5.48 -104.46 -0.57 -2.02 16 9 C 0.17 3.45 5.55 -5.19 -0.03 3.42 16 10 N -0.58 -14.24 2.91 -182.50 -0.53 -14.77 16 11 C 0.16 3.99 8.14 59.85 0.49 4.48 16 12 C -0.26 -6.73 9.68 -15.06 -0.15 -6.87 16 13 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 14 C 0.00 0.13 5.13 -17.43 -0.09 0.05 16 15 N -0.90 -25.67 10.57 55.49 0.59 -25.08 16 16 Si 0.91 21.13 29.57 -169.99 -5.03 16.11 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.09 1.79 7.23 -39.48 -0.29 1.50 16 21 F -0.13 -2.67 15.70 2.25 0.04 -2.63 16 22 C -0.09 -1.64 9.57 -39.10 -0.37 -2.02 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.13 1.73 7.61 -52.48 -0.40 1.33 16 27 H 0.14 2.02 8.03 -52.49 -0.42 1.60 16 28 H 0.06 1.16 7.89 -51.93 -0.41 0.75 16 29 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 30 H 0.03 0.85 7.41 -51.93 -0.38 0.46 16 31 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 32 H 0.00 0.08 7.77 -51.93 -0.40 -0.32 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.14 2.35 7.65 -52.49 -0.40 1.95 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -30.60 302.17 -6.14 -36.74 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.01 Total: -2.34 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.04 Total: 2.16 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.06 Total: -39.85 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.71 Total: -14.73 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.60 -6.14 -36.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135360499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.639 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds