Wall clock time and date at job start Mon Mar 30 2020 00:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34715 * 116.99980 * 2 1 4 4 O 1.21478 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.47731 * 120.00228 * 180.02562 * 3 2 1 6 6 C 1.39649 * 120.13702 * 359.97222 * 5 3 2 7 7 C 1.37923 * 119.90168 * 180.02562 * 6 5 3 8 8 C 1.38359 * 120.17661 * 359.72448 * 7 6 5 9 9 C 1.50703 * 119.85871 * 180.27411 * 8 7 6 10 10 N 1.46500 * 109.46957 * 260.27637 * 9 8 7 11 11 C 1.46502 * 120.00190 * 270.00040 * 10 9 8 12 12 C 1.36936 * 119.99766 * 90.00827 * 10 9 8 13 13 H 1.07999 * 120.00420 * 22.14564 * 12 10 9 14 14 C 1.38820 * 119.99721 * 202.15083 * 12 10 9 15 15 N 1.31617 * 120.00135 * 11.26331 * 14 12 10 16 16 Si 1.86797 * 119.99702 * 191.26998 * 14 12 10 17 17 H 1.48491 * 109.47307 * 59.99652 * 16 14 12 18 18 H 1.48506 * 109.47105 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46928 * 299.99277 * 16 14 12 20 20 C 1.38554 * 120.27479 * 0.55602 * 8 7 6 21 21 F 1.35101 * 119.94574 * 179.72458 * 20 8 7 22 22 C 1.38192 * 120.10267 * 359.44339 * 20 8 7 23 23 H 1.09001 * 109.47313 * 60.00568 * 1 2 3 24 24 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47493 * 299.99915 * 1 2 3 26 26 H 1.08005 * 120.04734 * 0.04900 * 6 5 3 27 27 H 1.07993 * 119.91284 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47126 * 20.27834 * 9 8 7 29 29 H 1.08997 * 109.46900 * 140.27839 * 9 8 7 30 30 H 1.08994 * 109.47093 * 94.50275 * 11 10 9 31 31 H 1.08997 * 109.46872 * 214.51074 * 11 10 9 32 32 H 1.09007 * 109.46706 * 334.50514 * 11 10 9 33 33 H 0.96999 * 120.00051 * 180.02562 * 15 14 12 34 34 H 1.07997 * 120.09500 * 180.25440 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.3022 0.1084 -0.0005 7 6 5.6793 0.1863 -0.0005 8 6 6.3061 1.4197 -0.0063 9 6 7.8112 1.4965 -0.0125 10 7 8.2924 1.7579 1.3462 11 6 8.4684 3.1370 1.8083 12 6 8.5777 0.7133 2.1844 13 1 8.7985 -0.2619 1.7761 14 6 8.5832 0.9078 3.5589 15 7 8.1031 2.0226 4.0677 16 14 9.2721 -0.4128 4.6862 17 1 10.6988 -0.6539 4.3522 18 1 9.1635 0.0354 6.0978 19 1 8.5020 -1.6695 4.5048 20 6 5.5559 2.5845 -0.0006 21 9 6.1749 3.7854 -0.0006 22 6 4.1754 2.5199 -0.0006 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.8150 -0.8556 -0.0009 27 1 6.2698 -0.7179 -0.0001 28 1 8.2217 0.5513 -0.3678 29 1 8.1311 2.3026 -0.6727 30 1 7.5709 3.4610 2.3350 31 1 9.3236 3.1879 2.4822 32 1 8.6418 3.7879 0.9513 33 1 8.1073 2.1587 5.0281 34 1 3.5908 3.4279 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135360499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:20 Heat of formation + Delta-G solvation = -96.345357 kcal Electronic energy + Delta-G solvation = -20127.597022 eV Core-core repulsion = 16747.422095 eV Total energy + Delta-G solvation = -3380.174927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.84946 -41.62937 -39.80850 -37.64017 -37.30048 -33.98878 -32.22415 -31.62866 -29.09046 -28.01323 -27.49837 -24.70899 -23.71814 -22.81037 -21.72916 -19.41705 -18.81582 -18.24683 -17.44267 -17.17871 -17.08012 -16.93032 -16.69985 -16.19767 -15.38252 -15.11615 -14.89528 -14.72782 -14.44569 -14.33949 -13.94082 -13.21580 -13.20582 -13.03592 -12.85724 -12.73618 -12.52698 -12.36256 -12.09385 -12.00946 -11.87050 -11.84296 -11.67525 -10.64561 -10.04090 -9.71381 -8.87117 -7.83571 -5.31910 -0.45559 0.20980 1.37462 1.49574 1.52609 1.58069 1.58376 2.49698 2.63040 3.32626 3.35068 3.61474 3.73423 3.79026 3.97549 4.04042 4.26376 4.31238 4.34396 4.60531 4.65189 4.74502 4.83693 4.89939 5.02204 5.09182 5.13973 5.24617 5.31145 5.44735 5.63177 5.70066 5.82757 6.29032 6.59283 7.11024 7.80562 8.26348 9.19908 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.005552 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.779671 B = 5041.656569 C = 5695.510225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.520 3.480 4 O -0.537 6.537 5 C -0.130 4.130 6 C -0.057 4.057 7 C -0.096 4.096 8 C -0.090 4.090 9 C 0.173 3.827 10 N -0.603 5.603 11 C 0.182 3.818 12 C -0.260 4.260 13 H 0.086 0.914 14 C -0.053 4.053 15 N -0.940 5.940 16 Si 0.971 3.029 17 H -0.276 1.276 18 H -0.301 1.301 19 H -0.270 1.270 20 C 0.074 3.926 21 F -0.144 7.144 22 C -0.101 4.101 23 H 0.066 0.934 24 H 0.139 0.861 25 H 0.060 0.940 26 H 0.170 0.830 27 H 0.159 0.841 28 H 0.086 0.914 29 H 0.065 0.935 30 H -0.003 1.003 31 H 0.021 0.979 32 H 0.024 0.976 33 H 0.247 0.753 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -6.373 -10.412 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.367 3.633 4 O -0.428 6.428 5 C -0.132 4.132 6 C -0.075 4.075 7 C -0.115 4.115 8 C -0.095 4.095 9 C 0.047 3.953 10 N -0.324 5.324 11 C 0.037 3.963 12 C -0.390 4.390 13 H 0.104 0.896 14 C -0.248 4.248 15 N -0.586 5.586 16 Si 0.799 3.201 17 H -0.202 1.202 18 H -0.228 1.228 19 H -0.196 1.196 20 C 0.054 3.946 21 F -0.123 7.123 22 C -0.120 4.120 23 H 0.085 0.915 24 H 0.157 0.843 25 H 0.079 0.921 26 H 0.187 0.813 27 H 0.177 0.823 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.016 0.984 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.456 -5.985 -10.233 15.807 hybrid contribution 0.067 0.389 1.146 1.212 sum -10.389 -5.596 -9.087 14.894 Atomic orbital electron populations 1.23645 0.73966 1.06153 1.02704 1.86530 1.25469 1.30992 1.83722 1.21066 0.88788 0.81694 0.71783 1.90803 1.67315 1.37088 1.47643 1.18767 0.89351 0.94265 1.10844 1.21715 0.93434 0.98381 0.93988 1.21189 0.94418 0.97212 0.98632 1.21661 1.00276 0.92384 0.95174 1.20203 0.86451 1.01818 0.86807 1.44330 1.73679 1.02897 1.11470 1.20531 0.97908 0.83563 0.94294 1.19637 1.39683 0.92089 0.87577 0.89628 1.25881 1.00711 0.99406 0.98768 1.70270 1.49590 1.27692 1.11030 0.85281 0.78673 0.78918 0.77219 1.20169 1.22782 1.19555 1.17485 0.90348 0.80955 1.05805 1.91452 1.83130 1.43548 1.94178 1.21078 0.92468 0.98828 0.99633 0.91500 0.84320 0.92110 0.81266 0.82310 0.89610 0.91721 0.98416 0.96001 0.95704 0.94387 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -8.27 9.82 -56.25 -0.55 -8.82 16 3 C 0.52 15.50 7.90 70.33 0.56 16.06 16 4 O -0.54 -18.48 16.14 19.91 0.32 -18.16 16 5 C -0.13 -4.07 5.87 -20.10 -0.12 -4.19 16 6 C -0.06 -1.56 9.62 22.54 0.22 -1.34 16 7 C -0.10 -2.91 9.65 22.22 0.21 -2.69 16 8 C -0.09 -3.29 5.48 -19.76 -0.11 -3.40 16 9 C 0.17 6.63 5.55 85.63 0.47 7.11 16 10 N -0.60 -29.41 2.91 -731.30 -2.13 -31.53 16 11 C 0.18 9.26 8.14 127.77 1.04 10.30 16 12 C -0.26 -13.50 9.68 84.04 0.81 -12.69 16 13 H 0.09 4.12 7.84 -2.91 -0.02 4.09 16 14 C -0.05 -2.86 5.13 84.86 0.44 -2.43 16 15 N -0.94 -55.65 10.57 21.65 0.23 -55.42 16 16 Si 0.97 43.69 29.57 68.60 2.03 45.71 16 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 20 C 0.07 2.82 7.23 22.33 0.16 2.98 16 21 F -0.14 -5.85 15.70 44.97 0.71 -5.14 16 22 C -0.10 -3.52 9.57 22.58 0.22 -3.30 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 24 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.17 3.48 7.61 -2.91 -0.02 3.46 16 27 H 0.16 4.07 8.03 -2.91 -0.02 4.05 16 28 H 0.09 2.88 7.89 -2.39 -0.02 2.86 16 29 H 0.06 2.33 7.65 -2.39 -0.02 2.31 16 30 H 0.00 -0.14 7.41 -2.39 -0.02 -0.16 16 31 H 0.02 1.18 7.19 -2.39 -0.02 1.16 16 32 H 0.02 1.11 7.77 -2.38 -0.02 1.09 16 33 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.14 4.76 7.65 -2.91 -0.02 4.74 16 Total: -1.00 -67.09 302.17 6.82 -60.28 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.11 Total: 5.03 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.10 Total: 8.05 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.90 Total: -86.95 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.23 Total: -26.98 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.71 Total: -5.14 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.09 6.82 -60.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135360499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.069 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds