Wall clock time and date at job start Mon Mar 30 2020 00:34:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09003 * 109.47079 * 2 1
4 4 N 1.46491 * 109.47435 * 239.99748 * 2 1 3
5 5 C 1.34773 * 120.00354 * 84.99615 * 4 2 1
6 6 N 1.34772 * 120.00627 * 179.97438 * 5 4 2
7 7 O 1.21594 * 119.99771 * 0.02562 * 5 4 2
8 8 C 1.50704 * 109.46891 * 119.99235 * 2 1 3
9 9 O 1.21308 * 119.99173 * 120.00933 * 8 2 1
10 10 N 1.34769 * 120.00349 * 300.00370 * 8 2 1
11 11 C 1.40597 * 119.99949 * 180.02562 * 10 8 2
12 12 C 1.40648 * 126.08176 * 0.04729 * 11 10 8
13 13 N 1.30907 * 108.38298 * 179.70387 * 12 11 10
14 14 N 1.40067 * 108.41113 * 0.40226 * 13 12 11
15 15 C 1.37320 * 126.07294 * 179.85605 * 14 13 12
16 16 H 1.08002 * 120.00430 * 179.69232 * 15 14 13
17 17 C 1.38992 * 119.99664 * 359.41108 * 15 14 13
18 18 N 1.31294 * 120.00157 * 0.27652 * 17 15 14
19 19 Si 1.86803 * 119.99838 * 180.27798 * 17 15 14
20 20 H 1.48504 * 109.47034 * 59.99910 * 19 17 15
21 21 H 1.48498 * 109.47326 * 180.02562 * 19 17 15
22 22 H 1.48501 * 109.46993 * 299.99983 * 19 17 15
23 23 C 1.35688 * 126.08014 * 179.97438 * 11 10 8
24 24 H 1.08996 * 109.47076 * 60.00502 * 1 2 3
25 25 H 1.09005 * 109.46868 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47289 * 300.00126 * 1 2 3
27 27 H 0.96999 * 120.00085 * 265.00225 * 4 2 1
28 28 H 0.97011 * 119.99696 * 0.02562 * 6 5 4
29 29 H 0.96995 * 120.00324 * 180.02562 * 6 5 4
30 30 H 0.97002 * 120.00333 * 359.97438 * 10 8 2
31 31 H 1.07999 * 125.80726 * 359.95383 * 12 11 10
32 32 H 0.97005 * 119.99961 * 179.97438 * 18 17 15
33 33 H 1.07996 * 126.24199 * 0.07665 * 23 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 -1.1960
5 6 2.1471 -0.0184 -2.3571
6 7 2.5969 -0.6536 -3.4573
7 8 1.8583 1.1615 -2.4117
8 6 2.0323 -0.7103 1.2306
9 8 2.7298 -1.6965 1.1193
10 7 1.7067 -0.2498 2.4546
11 6 2.1758 -0.9122 3.6026
12 6 2.9890 -2.0595 3.6228
13 7 3.2224 -2.3783 4.8708
14 7 2.5626 -1.4565 5.6936
15 6 2.5621 -1.4540 7.0668
16 1 2.0212 -0.6899 7.6053
17 6 3.2528 -2.4384 7.7638
18 7 3.9103 -3.3674 7.1092
19 14 3.2457 -2.4395 9.6318
20 1 1.8494 -2.5661 10.1214
21 1 4.0508 -3.5839 10.1292
22 1 3.8317 -1.1691 10.1298
23 6 1.9256 -0.5574 4.8882
24 1 -0.3633 0.5137 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3634 0.5138 0.8900
27 1 2.2491 -1.6318 -1.1525
28 1 2.8277 -1.5948 -3.4137
29 1 2.6899 -0.1697 -4.2928
30 1 1.1493 0.5391 2.5436
31 1 3.3612 -2.5855 2.7560
32 1 4.3927 -4.0542 7.5957
33 1 1.3303 0.2826 5.2144
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000139703388.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:34:27
Heat of formation + Delta-G solvation = 16.830163 kcal
Electronic energy + Delta-G solvation = -19660.099254 eV
Core-core repulsion = 16337.044698 eV
Total energy + Delta-G solvation = -3323.054556 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 267.112 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.41065 -39.67121 -38.57889 -34.93501 -34.32176 -33.80778 -33.18570 -30.47896
-30.05881 -27.69542 -25.21029 -24.18294 -21.55405 -20.88713 -20.20025 -19.46014
-18.65099 -17.59349 -17.41248 -16.09324 -15.63458 -15.45587 -15.35499 -14.73670
-14.61575 -14.31554 -13.85812 -13.49113 -13.20257 -12.93577 -12.62166 -12.31780
-11.72186 -11.64260 -11.42524 -11.25539 -10.97572 -10.57595 -10.41925 -10.21913
-9.84239 -9.39026 -9.19377 -9.06387 -8.83250 -8.09088 -6.74430 -6.57785
-4.25365 2.67790 2.72962 3.00431 3.03835 3.07749 3.12030 3.58956
3.64589 3.86051 4.37266 4.38888 4.64746 5.00009 5.02076 5.05742
5.18510 5.52358 5.71010 6.06337 6.21408 6.32521 6.41781 6.59021
6.78031 6.85992 6.91870 7.06161 7.20536 7.82836 7.86438 8.10189
8.23913 8.51608 8.56990 8.76670 9.34973 9.63967 10.38106
Molecular weight = 267.11amu
Principal moments of inertia in cm(-1)
A = 0.060099 B = 0.003520 C = 0.003384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 465.782412 B = 7952.507607 C = 8271.432681
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.148 3.852
3 H 0.112 0.888
4 N -0.724 5.724
5 C 0.710 3.290
6 N -0.867 5.867
7 O -0.600 6.600
8 C 0.495 3.505
9 O -0.536 6.536
10 N -0.615 5.615
11 C -0.063 4.063
12 C -0.032 4.032
13 N -0.261 5.261
14 N -0.141 5.141
15 C -0.324 4.324
16 H 0.116 0.884
17 C 0.046 3.954
18 N -0.770 5.770
19 Si 0.935 3.065
20 H -0.267 1.267
21 H -0.277 1.277
22 H -0.267 1.267
23 C -0.082 4.082
24 H 0.071 0.929
25 H 0.063 0.937
26 H 0.072 0.928
27 H 0.407 0.593
28 H 0.398 0.602
29 H 0.414 0.586
30 H 0.399 0.601
31 H 0.176 0.824
32 H 0.275 0.725
33 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.193 4.336 -12.291 14.030
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.038 3.962
3 H 0.130 0.870
4 N -0.382 5.382
5 C 0.408 3.592
6 N -0.435 5.435
7 O -0.478 6.478
8 C 0.280 3.720
9 O -0.413 6.413
10 N -0.257 5.257
11 C -0.168 4.168
12 C -0.208 4.208
13 N -0.092 5.092
14 N 0.091 4.909
15 C -0.456 4.456
16 H 0.134 0.866
17 C -0.171 4.171
18 N -0.396 5.396
19 Si 0.759 3.241
20 H -0.191 1.191
21 H -0.201 1.201
22 H -0.191 1.191
23 C -0.233 4.233
24 H 0.090 0.910
25 H 0.082 0.918
26 H 0.091 0.909
27 H 0.244 0.756
28 H 0.226 0.774
29 H 0.246 0.754
30 H 0.233 0.767
31 H 0.192 0.808
32 H 0.086 0.914
33 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -4.241 3.585 -11.398 12.679
hybrid contribution -0.458 0.338 0.005 0.569
sum -4.698 3.923 -11.393 12.933
Atomic orbital electron populations
1.22160 0.93206 1.03123 1.03340 1.20529 0.95168 0.97615 0.82899
0.87049 1.44770 1.71007 1.14548 1.07875 1.15864 0.77939 0.84817
0.80627 1.42934 1.73553 1.15038 1.11995 1.90956 1.57739 1.14331
1.84812 1.20274 0.81937 0.85561 0.84231 1.90585 1.38319 1.26489
1.85914 1.42387 1.50058 1.29510 1.03780 1.17264 1.13114 1.01903
0.84535 1.24092 1.02658 0.97578 0.96426 1.78258 1.19098 1.13293
0.98546 1.44544 1.26580 1.14679 1.05088 1.19840 1.34260 1.14652
0.76838 0.86615 1.25643 0.95191 0.94891 1.01354 1.70206 1.22722
1.10178 1.36529 0.85891 0.79070 0.78661 0.80509 1.19146 1.20132
1.19143 1.21270 1.10900 1.01858 0.89288 0.90995 0.91756 0.90904
0.75626 0.77386 0.75439 0.76736 0.80772 0.91392 0.83611
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.70 9.38 37.16 0.35 -1.35 16
2 C 0.15 1.89 2.98 -69.08 -0.21 1.69 16
3 H 0.11 1.44 7.58 -51.93 -0.39 1.05 16
4 N -0.72 -8.76 4.96 -59.82 -0.30 -9.06 16
5 C 0.71 8.79 8.80 -86.93 -0.77 8.02 16
6 N -0.87 -6.83 8.88 27.63 0.25 -6.58 16
7 O -0.60 -9.64 16.84 5.28 0.09 -9.55 16
8 C 0.50 8.17 7.19 -10.99 -0.08 8.09 16
9 O -0.54 -10.59 12.99 5.53 0.07 -10.52 16
10 N -0.62 -10.43 5.36 -10.00 -0.05 -10.49 16
11 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16
12 C -0.03 -0.83 10.85 -17.04 -0.18 -1.01 16
13 N -0.26 -7.50 10.40 30.80 0.32 -7.18 16
14 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16
15 C -0.32 -8.48 10.25 -14.81 -0.15 -8.63 16
16 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16
17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16
18 N -0.77 -21.33 11.81 55.50 0.66 -20.68 16
19 Si 0.93 18.73 29.55 -169.99 -5.02 13.70 16
20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16
21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16
22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16
23 C -0.08 -1.90 11.49 -16.39 -0.19 -2.08 16
24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
26 H 0.07 0.66 7.56 -51.93 -0.39 0.26 16
27 H 0.41 4.63 7.80 -40.82 -0.32 4.31 16
28 H 0.40 2.12 8.84 -40.81 -0.36 1.76 16
29 H 0.41 2.67 8.93 -40.82 -0.36 2.31 16
30 H 0.40 5.19 8.24 -40.82 -0.34 4.86 16
31 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16
32 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16
33 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16
LS Contribution 294.56 15.07 4.44 4.44
Total: -1.00 -35.25 294.56 -4.79 -40.04
By element:
Atomic # 1 Polarization: 19.21 SS G_CDS: -3.29 Total: 15.92 kcal
Atomic # 6 Polarization: 5.73 SS G_CDS: -1.90 Total: 3.83 kcal
Atomic # 7 Polarization: -58.69 SS G_CDS: 0.83 Total: -57.86 kcal
Atomic # 8 Polarization: -20.24 SS G_CDS: 0.16 Total: -20.07 kcal
Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -35.25 -4.79 -40.04 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000139703388.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.868 kcal
(2) G-P(sol) polarization free energy of solvation -35.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.618 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.788 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.830 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds