Wall clock time and date at job start Mon Mar 30 2020 00:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47079 * 2 1 4 4 N 1.46491 * 109.47435 * 239.99748 * 2 1 3 5 5 C 1.34773 * 120.00354 * 84.99615 * 4 2 1 6 6 N 1.34772 * 120.00627 * 179.97438 * 5 4 2 7 7 O 1.21594 * 119.99771 * 0.02562 * 5 4 2 8 8 C 1.50704 * 109.46891 * 119.99235 * 2 1 3 9 9 O 1.21308 * 119.99173 * 120.00933 * 8 2 1 10 10 N 1.34769 * 120.00349 * 300.00370 * 8 2 1 11 11 C 1.40597 * 119.99949 * 180.02562 * 10 8 2 12 12 C 1.40648 * 126.08176 * 0.04729 * 11 10 8 13 13 N 1.30907 * 108.38298 * 179.70387 * 12 11 10 14 14 N 1.40067 * 108.41113 * 0.40226 * 13 12 11 15 15 C 1.37320 * 126.07294 * 179.85605 * 14 13 12 16 16 H 1.08002 * 120.00430 * 179.69232 * 15 14 13 17 17 C 1.38992 * 119.99664 * 359.41108 * 15 14 13 18 18 N 1.31294 * 120.00157 * 0.27652 * 17 15 14 19 19 Si 1.86803 * 119.99838 * 180.27798 * 17 15 14 20 20 H 1.48504 * 109.47034 * 59.99910 * 19 17 15 21 21 H 1.48498 * 109.47326 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 299.99983 * 19 17 15 23 23 C 1.35688 * 126.08014 * 179.97438 * 11 10 8 24 24 H 1.08996 * 109.47076 * 60.00502 * 1 2 3 25 25 H 1.09005 * 109.46868 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47289 * 300.00126 * 1 2 3 27 27 H 0.96999 * 120.00085 * 265.00225 * 4 2 1 28 28 H 0.97011 * 119.99696 * 0.02562 * 6 5 4 29 29 H 0.96995 * 120.00324 * 180.02562 * 6 5 4 30 30 H 0.97002 * 120.00333 * 359.97438 * 10 8 2 31 31 H 1.07999 * 125.80726 * 359.95383 * 12 11 10 32 32 H 0.97005 * 119.99961 * 179.97438 * 18 17 15 33 33 H 1.07996 * 126.24199 * 0.07665 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 7 2.5969 -0.6536 -3.4573 7 8 1.8583 1.1615 -2.4117 8 6 2.0323 -0.7103 1.2306 9 8 2.7298 -1.6965 1.1193 10 7 1.7067 -0.2498 2.4546 11 6 2.1758 -0.9122 3.6026 12 6 2.9890 -2.0595 3.6228 13 7 3.2224 -2.3783 4.8708 14 7 2.5626 -1.4565 5.6936 15 6 2.5621 -1.4540 7.0668 16 1 2.0212 -0.6899 7.6053 17 6 3.2528 -2.4384 7.7638 18 7 3.9103 -3.3674 7.1092 19 14 3.2457 -2.4395 9.6318 20 1 1.8494 -2.5661 10.1214 21 1 4.0508 -3.5839 10.1292 22 1 3.8317 -1.1691 10.1298 23 6 1.9256 -0.5574 4.8882 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.2491 -1.6318 -1.1525 28 1 2.8277 -1.5948 -3.4137 29 1 2.6899 -0.1697 -4.2928 30 1 1.1493 0.5391 2.5436 31 1 3.3612 -2.5855 2.7560 32 1 4.3927 -4.0542 7.5957 33 1 1.3303 0.2826 5.2144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139703388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:27 Heat of formation + Delta-G solvation = 16.830163 kcal Electronic energy + Delta-G solvation = -19660.099254 eV Core-core repulsion = 16337.044698 eV Total energy + Delta-G solvation = -3323.054556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41065 -39.67121 -38.57889 -34.93501 -34.32176 -33.80778 -33.18570 -30.47896 -30.05881 -27.69542 -25.21029 -24.18294 -21.55405 -20.88713 -20.20025 -19.46014 -18.65099 -17.59349 -17.41248 -16.09324 -15.63458 -15.45587 -15.35499 -14.73670 -14.61575 -14.31554 -13.85812 -13.49113 -13.20257 -12.93577 -12.62166 -12.31780 -11.72186 -11.64260 -11.42524 -11.25539 -10.97572 -10.57595 -10.41925 -10.21913 -9.84239 -9.39026 -9.19377 -9.06387 -8.83250 -8.09088 -6.74430 -6.57785 -4.25365 2.67790 2.72962 3.00431 3.03835 3.07749 3.12030 3.58956 3.64589 3.86051 4.37266 4.38888 4.64746 5.00009 5.02076 5.05742 5.18510 5.52358 5.71010 6.06337 6.21408 6.32521 6.41781 6.59021 6.78031 6.85992 6.91870 7.06161 7.20536 7.82836 7.86438 8.10189 8.23913 8.51608 8.56990 8.76670 9.34973 9.63967 10.38106 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.060099 B = 0.003520 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.782412 B = 7952.507607 C = 8271.432681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.112 0.888 4 N -0.724 5.724 5 C 0.710 3.290 6 N -0.867 5.867 7 O -0.600 6.600 8 C 0.495 3.505 9 O -0.536 6.536 10 N -0.615 5.615 11 C -0.063 4.063 12 C -0.032 4.032 13 N -0.261 5.261 14 N -0.141 5.141 15 C -0.324 4.324 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.770 5.770 19 Si 0.935 3.065 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.082 4.082 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.407 0.593 28 H 0.398 0.602 29 H 0.414 0.586 30 H 0.399 0.601 31 H 0.176 0.824 32 H 0.275 0.725 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 4.336 -12.291 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.130 0.870 4 N -0.382 5.382 5 C 0.408 3.592 6 N -0.435 5.435 7 O -0.478 6.478 8 C 0.280 3.720 9 O -0.413 6.413 10 N -0.257 5.257 11 C -0.168 4.168 12 C -0.208 4.208 13 N -0.092 5.092 14 N 0.091 4.909 15 C -0.456 4.456 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.396 5.396 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.233 4.233 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.244 0.756 28 H 0.226 0.774 29 H 0.246 0.754 30 H 0.233 0.767 31 H 0.192 0.808 32 H 0.086 0.914 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.241 3.585 -11.398 12.679 hybrid contribution -0.458 0.338 0.005 0.569 sum -4.698 3.923 -11.393 12.933 Atomic orbital electron populations 1.22160 0.93206 1.03123 1.03340 1.20529 0.95168 0.97615 0.82899 0.87049 1.44770 1.71007 1.14548 1.07875 1.15864 0.77939 0.84817 0.80627 1.42934 1.73553 1.15038 1.11995 1.90956 1.57739 1.14331 1.84812 1.20274 0.81937 0.85561 0.84231 1.90585 1.38319 1.26489 1.85914 1.42387 1.50058 1.29510 1.03780 1.17264 1.13114 1.01903 0.84535 1.24092 1.02658 0.97578 0.96426 1.78258 1.19098 1.13293 0.98546 1.44544 1.26580 1.14679 1.05088 1.19840 1.34260 1.14652 0.76838 0.86615 1.25643 0.95191 0.94891 1.01354 1.70206 1.22722 1.10178 1.36529 0.85891 0.79070 0.78661 0.80509 1.19146 1.20132 1.19143 1.21270 1.10900 1.01858 0.89288 0.90995 0.91756 0.90904 0.75626 0.77386 0.75439 0.76736 0.80772 0.91392 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.38 37.16 0.35 -1.35 16 2 C 0.15 1.89 2.98 -69.08 -0.21 1.69 16 3 H 0.11 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.72 -8.76 4.96 -59.82 -0.30 -9.06 16 5 C 0.71 8.79 8.80 -86.93 -0.77 8.02 16 6 N -0.87 -6.83 8.88 27.63 0.25 -6.58 16 7 O -0.60 -9.64 16.84 5.28 0.09 -9.55 16 8 C 0.50 8.17 7.19 -10.99 -0.08 8.09 16 9 O -0.54 -10.59 12.99 5.53 0.07 -10.52 16 10 N -0.62 -10.43 5.36 -10.00 -0.05 -10.49 16 11 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 12 C -0.03 -0.83 10.85 -17.04 -0.18 -1.01 16 13 N -0.26 -7.50 10.40 30.80 0.32 -7.18 16 14 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 15 C -0.32 -8.48 10.25 -14.81 -0.15 -8.63 16 16 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.33 11.81 55.50 0.66 -20.68 16 19 Si 0.93 18.73 29.55 -169.99 -5.02 13.70 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.08 -1.90 11.49 -16.39 -0.19 -2.08 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.66 7.56 -51.93 -0.39 0.26 16 27 H 0.41 4.63 7.80 -40.82 -0.32 4.31 16 28 H 0.40 2.12 8.84 -40.81 -0.36 1.76 16 29 H 0.41 2.67 8.93 -40.82 -0.36 2.31 16 30 H 0.40 5.19 8.24 -40.82 -0.34 4.86 16 31 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 32 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.15 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 294.56 15.07 4.44 4.44 Total: -1.00 -35.25 294.56 -4.79 -40.04 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -3.29 Total: 15.92 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.90 Total: 3.83 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.83 Total: -57.86 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: 0.16 Total: -20.07 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.25 -4.79 -40.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139703388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.868 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds