Wall clock time and date at job start Mon Mar 30 2020 00:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47079 * 2 1 4 4 N 1.46491 * 109.47435 * 239.99748 * 2 1 3 5 5 C 1.34773 * 120.00354 * 84.99615 * 4 2 1 6 6 N 1.34772 * 120.00627 * 179.97438 * 5 4 2 7 7 O 1.21594 * 119.99771 * 0.02562 * 5 4 2 8 8 C 1.50704 * 109.46891 * 119.99235 * 2 1 3 9 9 O 1.21308 * 119.99173 * 120.00933 * 8 2 1 10 10 N 1.34769 * 120.00349 * 300.00370 * 8 2 1 11 11 C 1.40597 * 119.99949 * 180.02562 * 10 8 2 12 12 C 1.40648 * 126.08176 * 0.04729 * 11 10 8 13 13 N 1.30907 * 108.38298 * 179.70387 * 12 11 10 14 14 N 1.40067 * 108.41113 * 0.40226 * 13 12 11 15 15 C 1.37320 * 126.07294 * 179.85605 * 14 13 12 16 16 H 1.08002 * 120.00430 * 179.69232 * 15 14 13 17 17 C 1.38992 * 119.99664 * 359.41108 * 15 14 13 18 18 N 1.31294 * 120.00157 * 0.27652 * 17 15 14 19 19 Si 1.86803 * 119.99838 * 180.27798 * 17 15 14 20 20 H 1.48504 * 109.47034 * 59.99910 * 19 17 15 21 21 H 1.48498 * 109.47326 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 299.99983 * 19 17 15 23 23 C 1.35688 * 126.08014 * 179.97438 * 11 10 8 24 24 H 1.08996 * 109.47076 * 60.00502 * 1 2 3 25 25 H 1.09005 * 109.46868 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47289 * 300.00126 * 1 2 3 27 27 H 0.96999 * 120.00085 * 265.00225 * 4 2 1 28 28 H 0.97011 * 119.99696 * 0.02562 * 6 5 4 29 29 H 0.96995 * 120.00324 * 180.02562 * 6 5 4 30 30 H 0.97002 * 120.00333 * 359.97438 * 10 8 2 31 31 H 1.07999 * 125.80726 * 359.95383 * 12 11 10 32 32 H 0.97005 * 119.99961 * 179.97438 * 18 17 15 33 33 H 1.07996 * 126.24199 * 0.07665 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 7 2.5969 -0.6536 -3.4573 7 8 1.8583 1.1615 -2.4117 8 6 2.0323 -0.7103 1.2306 9 8 2.7298 -1.6965 1.1193 10 7 1.7067 -0.2498 2.4546 11 6 2.1758 -0.9122 3.6026 12 6 2.9890 -2.0595 3.6228 13 7 3.2224 -2.3783 4.8708 14 7 2.5626 -1.4565 5.6936 15 6 2.5621 -1.4540 7.0668 16 1 2.0212 -0.6899 7.6053 17 6 3.2528 -2.4384 7.7638 18 7 3.9103 -3.3674 7.1092 19 14 3.2457 -2.4395 9.6318 20 1 1.8494 -2.5661 10.1214 21 1 4.0508 -3.5839 10.1292 22 1 3.8317 -1.1691 10.1298 23 6 1.9256 -0.5574 4.8882 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.2491 -1.6318 -1.1525 28 1 2.8277 -1.5948 -3.4137 29 1 2.6899 -0.1697 -4.2928 30 1 1.1493 0.5391 2.5436 31 1 3.3612 -2.5855 2.7560 32 1 4.3927 -4.0542 7.5957 33 1 1.3303 0.2826 5.2144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139703388.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:27 Heat of formation + Delta-G solvation = -13.346133 kcal Electronic energy + Delta-G solvation = -19661.407796 eV Core-core repulsion = 16337.044698 eV Total energy + Delta-G solvation = -3324.363098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.84391 -41.09847 -40.01011 -36.13263 -35.85878 -35.02356 -34.62618 -32.25782 -31.28499 -29.41385 -26.93272 -25.45510 -22.98471 -22.45826 -21.48775 -21.15099 -19.77164 -19.11734 -18.57199 -17.46913 -17.20276 -16.93920 -16.59572 -16.02945 -15.85558 -15.57312 -15.31139 -15.09925 -14.77384 -14.53074 -13.73721 -13.47547 -13.31395 -13.22264 -12.86602 -12.84018 -12.58753 -12.13198 -11.83750 -11.49237 -10.99577 -10.84299 -10.76787 -10.64763 -10.09775 -10.07943 -8.52819 -8.45601 -6.22910 1.20239 1.40866 1.49706 1.56887 1.66705 1.86941 2.12171 2.15087 2.39258 2.52377 2.90641 3.10549 3.57738 3.75634 4.07131 4.17242 4.45929 4.59648 4.71221 4.82619 5.01654 5.07539 5.21889 5.30563 5.37466 5.44658 5.84528 5.97108 6.05134 6.32149 6.68843 6.75126 7.02567 7.31158 7.47658 7.62734 7.69701 8.53516 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.060099 B = 0.003520 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.782412 B = 7952.507607 C = 8271.432681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.116 0.884 4 N -0.725 5.725 5 C 0.706 3.294 6 N -0.847 5.847 7 O -0.637 6.637 8 C 0.498 3.502 9 O -0.568 6.568 10 N -0.607 5.607 11 C -0.046 4.046 12 C -0.057 4.057 13 N -0.311 5.311 14 N -0.169 5.169 15 C -0.355 4.355 16 H 0.141 0.859 17 C -0.006 4.006 18 N -0.825 5.825 19 Si 1.018 2.982 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.254 1.254 23 C -0.078 4.078 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.411 0.589 28 H 0.413 0.587 29 H 0.423 0.577 30 H 0.421 0.579 31 H 0.170 0.830 32 H 0.276 0.724 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 5.810 -12.297 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.134 0.866 4 N -0.382 5.382 5 C 0.404 3.596 6 N -0.416 5.416 7 O -0.519 6.519 8 C 0.285 3.715 9 O -0.447 6.447 10 N -0.252 5.252 11 C -0.152 4.152 12 C -0.232 4.232 13 N -0.143 5.143 14 N 0.062 4.938 15 C -0.486 4.486 16 H 0.158 0.842 17 C -0.217 4.217 18 N -0.453 5.453 19 Si 0.837 3.163 20 H -0.177 1.177 21 H -0.204 1.204 22 H -0.178 1.178 23 C -0.229 4.229 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.248 0.752 28 H 0.243 0.757 29 H 0.257 0.743 30 H 0.259 0.741 31 H 0.187 0.813 32 H 0.086 0.914 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.610 5.072 -11.461 13.732 hybrid contribution -0.057 -0.084 -0.198 0.223 sum -5.668 4.988 -11.660 13.891 Atomic orbital electron populations 1.22137 0.91071 1.03418 1.04498 1.20473 0.96573 0.96954 0.81151 0.86628 1.44761 1.71079 1.14652 1.07732 1.16015 0.77915 0.84405 0.81267 1.42755 1.71902 1.15760 1.11138 1.90931 1.59535 1.16001 1.85460 1.20988 0.80672 0.84906 0.84937 1.90578 1.39567 1.28103 1.86468 1.42302 1.50417 1.30039 1.02428 1.17316 1.11152 1.00544 0.86226 1.24189 1.04079 0.99253 0.95710 1.78151 1.20958 1.15328 0.99869 1.44826 1.27716 1.15491 1.05729 1.20579 1.35157 1.15837 0.77055 0.84177 1.26857 0.94045 0.93902 1.06945 1.70389 1.24498 1.11496 1.38888 0.84665 0.79568 0.78826 0.73230 1.17721 1.20380 1.17820 1.22025 1.09889 1.01882 0.89060 0.90719 0.91872 0.88883 0.75202 0.75674 0.74349 0.74095 0.81301 0.91435 0.79428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.38 71.98 0.68 -2.18 16 2 C 0.16 3.75 2.98 44.25 0.13 3.88 16 3 H 0.12 2.74 7.58 -2.39 -0.02 2.73 16 4 N -0.72 -16.42 4.96 -461.42 -2.29 -18.70 16 5 C 0.71 16.34 8.80 179.06 1.58 17.91 16 6 N -0.85 -11.69 8.88 -184.75 -1.64 -13.33 16 7 O -0.64 -19.59 16.84 -4.01 -0.07 -19.65 16 8 C 0.50 15.76 7.19 87.66 0.63 16.39 16 9 O -0.57 -22.37 12.99 -3.12 -0.04 -22.41 16 10 N -0.61 -19.39 5.36 -303.92 -1.63 -21.02 16 11 C -0.05 -2.04 6.90 37.73 0.26 -1.78 16 12 C -0.06 -3.01 10.85 85.42 0.93 -2.09 16 13 N -0.31 -18.47 10.40 -56.47 -0.59 -19.06 16 14 N -0.17 -9.22 3.74 -190.01 -0.71 -9.93 16 15 C -0.36 -18.58 10.25 84.01 0.86 -17.72 16 16 H 0.14 6.31 7.83 -2.91 -0.02 6.29 16 17 C -0.01 -0.30 5.50 84.95 0.47 0.16 16 18 N -0.82 -47.25 11.81 21.66 0.26 -47.00 16 19 Si 1.02 38.17 29.55 68.60 2.03 40.20 16 20 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 21 H -0.28 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 23 C -0.08 -3.50 11.49 83.38 0.96 -2.55 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.09 1.36 7.56 -2.39 -0.02 1.34 16 27 H 0.41 8.83 7.80 -92.71 -0.72 8.10 16 28 H 0.41 3.52 8.84 -92.70 -0.82 2.70 16 29 H 0.42 4.61 8.93 -92.71 -0.83 3.78 16 30 H 0.42 9.63 8.24 -92.71 -0.76 8.87 16 31 H 0.17 8.92 5.92 -2.91 -0.02 8.91 16 32 H 0.28 14.58 8.31 -92.70 -0.77 13.81 16 33 H 0.19 6.55 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -79.14 294.56 -0.11 -79.25 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -1.92 Total: 39.60 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 6.49 Total: 12.05 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -6.60 Total: -129.04 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.11 Total: -42.06 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -79.14 -0.11 -79.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139703388.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.907 kcal (2) G-P(sol) polarization free energy of solvation -79.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds