Wall clock time and date at job start Mon Mar 30 2020 00:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46952 * 2 1 4 4 C 1.53001 * 109.47015 * 240.00682 * 2 1 3 5 5 N 1.46500 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.34780 * 119.99873 * 179.97438 * 5 4 2 7 7 O 1.21681 * 120.00232 * 0.02562 * 6 5 4 8 8 C 1.46373 * 119.99896 * 179.97438 * 6 5 4 9 9 H 1.08010 * 119.99937 * 0.02562 * 8 6 5 10 10 C 1.40046 * 120.00115 * 180.02562 * 8 6 5 11 11 N 1.30670 * 120.00011 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00116 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47462 * 59.99638 * 12 10 8 14 14 H 1.48494 * 109.47212 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46898 * 299.99702 * 12 10 8 16 16 O 1.42896 * 109.47243 * 120.00677 * 2 1 3 17 17 C 1.35903 * 116.99810 * 275.01403 * 16 2 1 18 18 C 1.38761 * 120.04313 * 5.44178 * 17 16 2 19 19 C 1.38131 * 119.99697 * 179.97438 * 18 17 16 20 20 C 1.38254 * 120.07949 * 359.97438 * 19 18 17 21 21 C 1.38479 * 120.08103 * 0.02562 * 20 19 18 22 22 F 1.35105 * 119.99335 * 179.97438 * 21 20 19 23 23 C 1.38376 * 120.00814 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.46451 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46555 * 299.99138 * 1 2 3 26 26 H 1.08992 * 109.47341 * 59.99427 * 1 2 3 27 27 H 1.09001 * 109.47205 * 300.00044 * 4 2 1 28 28 H 1.09005 * 109.47375 * 59.99720 * 4 2 1 29 29 H 0.97003 * 120.00159 * 359.97438 * 5 4 2 30 30 H 0.96995 * 120.00263 * 180.02562 * 11 10 8 31 31 H 1.08007 * 120.00528 * 0.25540 * 18 17 16 32 32 H 1.08005 * 119.96353 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.96221 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.04321 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5050 -0.7206 -1.2497 6 6 4.1789 -1.3045 -2.2604 7 8 3.5705 -1.8316 -3.1729 8 6 5.6426 -1.3034 -2.2610 9 1 6.1827 -0.8352 -1.4513 10 6 6.3428 -1.9096 -3.3115 11 7 5.6895 -2.4757 -4.2914 12 14 8.2108 -1.9090 -3.3119 13 1 8.7064 -2.6087 -2.0995 14 1 8.7058 -2.6094 -4.5242 15 1 8.7053 -0.5087 -3.3122 16 8 2.0064 -0.6738 1.1667 17 6 2.1123 0.0623 2.3042 18 6 1.6595 1.3738 2.3277 19 6 1.7671 2.1209 3.4845 20 6 2.3251 1.5635 4.6200 21 6 2.7780 0.2550 4.6002 22 9 3.3235 -0.2878 5.7106 23 6 2.6729 -0.4963 3.4429 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6767 -1.7488 -1.2495 28 1 1.6766 -0.2072 -2.1393 29 1 3.9901 -0.3000 -0.5225 30 1 6.1744 -2.8959 -5.0188 31 1 1.2188 1.8090 1.4428 32 1 1.4141 3.1415 3.5023 33 1 2.4080 2.1492 5.5236 34 1 3.0263 -1.5167 3.4267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153904276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:57 Heat of formation + Delta-G solvation = -102.100940 kcal Electronic energy + Delta-G solvation = -19544.144488 eV Core-core repulsion = 16163.719980 eV Total energy + Delta-G solvation = -3380.424508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.02947 -40.35659 -37.85298 -36.92159 -33.86597 -32.44336 -31.48848 -30.51370 -29.80028 -26.97771 -24.99012 -23.34710 -22.92234 -20.88017 -19.69145 -18.67973 -17.35583 -16.55450 -16.32850 -16.29666 -15.80455 -15.37395 -15.06184 -14.87552 -14.15649 -13.92474 -13.84151 -13.47927 -12.98243 -12.90526 -12.43102 -12.28435 -12.13867 -11.78096 -11.49478 -11.40201 -11.21224 -10.95655 -10.83598 -10.58577 -10.42438 -10.22759 -9.02740 -8.83767 -8.37744 -7.63375 -7.53221 -6.18023 -4.63273 0.98500 1.16688 3.02152 3.17152 3.21818 3.23899 3.46049 4.10876 4.21587 4.55714 4.59535 4.63125 4.78770 4.84626 4.90567 5.06503 5.18432 5.24177 5.33450 5.59438 5.66761 5.78248 5.79756 5.93965 6.02651 6.10375 6.16612 6.24432 6.39834 6.61659 7.35785 7.44327 7.91555 8.06342 8.32625 9.03286 9.51735 10.60158 10.78318 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.004419 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.148545 B = 6334.538651 C = 7316.733986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.072 3.928 3 H 0.078 0.922 4 C 0.139 3.861 5 N -0.765 5.765 6 C 0.555 3.445 7 O -0.582 6.582 8 C -0.545 4.545 9 H 0.067 0.933 10 C 0.088 3.912 11 N -0.769 5.769 12 Si 0.908 3.092 13 H -0.268 1.268 14 H -0.280 1.280 15 H -0.268 1.268 16 O -0.294 6.294 17 C 0.170 3.830 18 C -0.224 4.224 19 C -0.051 4.051 20 C -0.200 4.200 21 C 0.138 3.862 22 F -0.137 7.137 23 C -0.193 4.193 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.381 0.619 30 H 0.269 0.731 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.315 9.097 14.888 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.421 5.421 6 C 0.359 3.641 7 O -0.465 6.465 8 C -0.582 4.582 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.732 3.268 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.193 1.193 16 O -0.207 6.207 17 C 0.123 3.877 18 C -0.243 4.243 19 C -0.069 4.069 20 C -0.219 4.219 21 C 0.118 3.882 22 F -0.115 7.115 23 C -0.212 4.212 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.213 0.787 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.715 8.357 14.004 18.491 hybrid contribution 1.153 0.293 0.545 1.308 sum -7.562 8.651 14.549 18.539 Atomic orbital electron populations 1.22322 0.94432 1.03849 1.02883 1.22933 0.94507 0.97131 0.83868 0.90373 1.21008 0.84910 1.00091 0.92666 1.46070 1.03480 1.64707 1.27875 1.18203 0.88362 0.77530 0.79970 1.90595 1.70178 1.48833 1.36895 1.20844 0.89707 1.39134 1.08500 0.91500 1.25696 0.99853 0.93194 0.94414 1.70006 1.36542 1.25931 1.07258 0.86434 0.83104 0.79019 0.78196 1.19263 1.20541 1.19290 1.86260 1.80159 1.38005 1.16283 1.18702 0.92359 0.89844 0.86745 1.21425 1.07885 0.94453 1.00502 1.20757 0.95485 0.99422 0.91271 1.20990 1.05869 0.94364 1.00695 1.17291 0.96398 0.91978 0.82518 1.91509 1.83265 1.86183 1.50568 1.20319 1.07422 1.02540 0.90924 0.90999 0.91850 0.90466 0.92175 0.91156 0.78717 0.92055 0.84518 0.84878 0.84874 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.17 37.16 0.34 -1.56 16 2 C 0.07 0.98 2.31 -26.73 -0.06 0.92 16 3 H 0.08 0.97 6.31 -51.93 -0.33 0.64 16 4 C 0.14 2.57 5.37 -4.04 -0.02 2.55 16 5 N -0.77 -17.24 5.44 -61.72 -0.34 -17.57 16 6 C 0.56 15.94 7.75 -12.99 -0.10 15.84 16 7 O -0.58 -18.91 15.02 5.21 0.08 -18.84 16 8 C -0.54 -15.59 9.54 -35.63 -0.34 -15.93 16 9 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 10 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 11 N -0.77 -23.21 11.83 55.55 0.66 -22.55 16 12 Si 0.91 20.34 29.56 -169.99 -5.02 15.31 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 O -0.29 -4.44 9.54 -19.43 -0.19 -4.63 16 17 C 0.17 2.25 6.60 -39.23 -0.26 2.00 16 18 C -0.22 -2.43 8.24 -39.43 -0.33 -2.75 16 19 C -0.05 -0.48 10.04 -39.61 -0.40 -0.87 16 20 C -0.20 -2.02 10.02 -39.49 -0.40 -2.41 16 21 C 0.14 1.66 7.30 -39.44 -0.29 1.37 16 22 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 23 C -0.19 -2.52 9.97 -39.37 -0.39 -2.91 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.59 6.91 -51.93 -0.36 0.23 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.38 7.80 8.33 -40.82 -0.34 7.46 16 30 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 31 H 0.14 1.28 5.42 -52.48 -0.28 0.99 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -34.45 301.64 -6.38 -40.82 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.82 Total: 5.95 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.34 Total: -1.37 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.32 Total: -40.13 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.11 Total: -23.46 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.45 -6.38 -40.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153904276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.277 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds