Wall clock time and date at job start Mon Mar 30 2020 00:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46952 * 2 1 4 4 C 1.53001 * 109.47015 * 240.00682 * 2 1 3 5 5 N 1.46500 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.34780 * 119.99873 * 179.97438 * 5 4 2 7 7 O 1.21681 * 120.00232 * 0.02562 * 6 5 4 8 8 C 1.46373 * 119.99896 * 179.97438 * 6 5 4 9 9 H 1.08010 * 119.99937 * 0.02562 * 8 6 5 10 10 C 1.40046 * 120.00115 * 180.02562 * 8 6 5 11 11 N 1.30670 * 120.00011 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00116 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47462 * 59.99638 * 12 10 8 14 14 H 1.48494 * 109.47212 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46898 * 299.99702 * 12 10 8 16 16 O 1.42896 * 109.47243 * 120.00677 * 2 1 3 17 17 C 1.35903 * 116.99810 * 275.01403 * 16 2 1 18 18 C 1.38761 * 120.04313 * 5.44178 * 17 16 2 19 19 C 1.38131 * 119.99697 * 179.97438 * 18 17 16 20 20 C 1.38254 * 120.07949 * 359.97438 * 19 18 17 21 21 C 1.38479 * 120.08103 * 0.02562 * 20 19 18 22 22 F 1.35105 * 119.99335 * 179.97438 * 21 20 19 23 23 C 1.38376 * 120.00814 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.46451 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46555 * 299.99138 * 1 2 3 26 26 H 1.08992 * 109.47341 * 59.99427 * 1 2 3 27 27 H 1.09001 * 109.47205 * 300.00044 * 4 2 1 28 28 H 1.09005 * 109.47375 * 59.99720 * 4 2 1 29 29 H 0.97003 * 120.00159 * 359.97438 * 5 4 2 30 30 H 0.96995 * 120.00263 * 180.02562 * 11 10 8 31 31 H 1.08007 * 120.00528 * 0.25540 * 18 17 16 32 32 H 1.08005 * 119.96353 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.96221 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.04321 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5050 -0.7206 -1.2497 6 6 4.1789 -1.3045 -2.2604 7 8 3.5705 -1.8316 -3.1729 8 6 5.6426 -1.3034 -2.2610 9 1 6.1827 -0.8352 -1.4513 10 6 6.3428 -1.9096 -3.3115 11 7 5.6895 -2.4757 -4.2914 12 14 8.2108 -1.9090 -3.3119 13 1 8.7064 -2.6087 -2.0995 14 1 8.7058 -2.6094 -4.5242 15 1 8.7053 -0.5087 -3.3122 16 8 2.0064 -0.6738 1.1667 17 6 2.1123 0.0623 2.3042 18 6 1.6595 1.3738 2.3277 19 6 1.7671 2.1209 3.4845 20 6 2.3251 1.5635 4.6200 21 6 2.7780 0.2550 4.6002 22 9 3.3235 -0.2878 5.7106 23 6 2.6729 -0.4963 3.4429 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6767 -1.7488 -1.2495 28 1 1.6766 -0.2072 -2.1393 29 1 3.9901 -0.3000 -0.5225 30 1 6.1744 -2.8959 -5.0188 31 1 1.2188 1.8090 1.4428 32 1 1.4141 3.1415 3.5023 33 1 2.4080 2.1492 5.5236 34 1 3.0263 -1.5167 3.4267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153904276.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:56 Heat of formation + Delta-G solvation = -126.224860 kcal Electronic energy + Delta-G solvation = -19545.190580 eV Core-core repulsion = 16163.719980 eV Total energy + Delta-G solvation = -3381.470600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.96419 -41.36860 -39.44438 -38.38197 -35.51170 -34.53093 -32.92304 -31.49138 -30.68278 -28.89658 -26.59411 -24.33311 -23.83883 -22.03805 -21.71456 -19.67456 -19.24587 -17.67923 -17.40517 -17.27942 -17.23133 -16.75561 -16.43753 -16.11919 -15.74376 -15.44823 -15.04897 -14.69305 -14.44927 -14.02603 -13.74967 -13.42467 -13.35562 -13.17981 -13.02204 -12.71079 -12.65050 -12.55248 -12.33897 -12.07576 -11.86876 -11.69249 -10.93038 -9.91792 -9.90070 -9.52105 -9.28911 -8.30541 -6.87287 0.11658 0.30212 1.39389 1.42831 1.54568 1.99476 2.24138 2.45833 2.60299 3.04198 3.34279 3.60405 3.63056 3.85417 3.89649 4.04214 4.06156 4.13135 4.27032 4.42930 4.62894 4.73025 4.82617 4.85993 5.01608 5.10106 5.19207 5.27169 5.30236 5.35392 5.74904 5.84874 6.17321 6.23244 6.38248 6.85271 7.49208 8.46272 8.65368 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.004419 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.148545 B = 6334.538651 C = 7316.733986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.083 3.917 3 H 0.098 0.902 4 C 0.136 3.864 5 N -0.753 5.753 6 C 0.538 3.462 7 O -0.631 6.631 8 C -0.575 4.575 9 H 0.084 0.916 10 C 0.030 3.970 11 N -0.821 5.821 12 Si 0.997 3.003 13 H -0.257 1.257 14 H -0.272 1.272 15 H -0.253 1.253 16 O -0.322 6.322 17 C 0.148 3.852 18 C -0.220 4.220 19 C -0.041 4.041 20 C -0.192 4.192 21 C 0.122 3.878 22 F -0.144 7.144 23 C -0.214 4.214 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.393 0.607 30 H 0.275 0.725 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 11.578 16.359 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.027 3.973 3 H 0.116 0.884 4 C 0.011 3.989 5 N -0.408 5.408 6 C 0.342 3.658 7 O -0.519 6.519 8 C -0.612 4.612 9 H 0.102 0.898 10 C -0.185 4.185 11 N -0.450 5.450 12 Si 0.816 3.184 13 H -0.182 1.182 14 H -0.197 1.197 15 H -0.176 1.176 16 O -0.236 6.236 17 C 0.102 3.898 18 C -0.239 4.239 19 C -0.059 4.059 20 C -0.211 4.211 21 C 0.103 3.897 22 F -0.123 7.123 23 C -0.234 4.234 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.226 0.774 30 H 0.085 0.915 31 H 0.173 0.827 32 H 0.190 0.810 33 H 0.177 0.823 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.318 10.872 15.537 20.707 hybrid contribution 0.952 -0.447 0.171 1.066 sum -7.366 10.425 15.708 20.240 Atomic orbital electron populations 1.22297 0.91822 1.03889 1.04777 1.22804 0.96249 0.96736 0.81501 0.88379 1.21153 0.82358 0.99585 0.95803 1.45737 1.05365 1.63155 1.26529 1.18578 0.89178 0.77545 0.80509 1.90546 1.71186 1.51082 1.39083 1.21396 0.90290 1.39877 1.09634 0.89767 1.26953 1.06350 0.91869 0.93336 1.70169 1.39550 1.26951 1.08350 0.85083 0.74712 0.79866 0.78706 1.18152 1.19665 1.17648 1.86196 1.81029 1.39247 1.17128 1.18855 0.93914 0.91000 0.85988 1.21691 1.07032 0.93280 1.01891 1.21214 0.93887 1.00814 0.89990 1.21365 1.04269 0.93343 1.02082 1.17501 0.97273 0.92952 0.82010 1.91487 1.83525 1.86487 1.50782 1.20369 1.08585 1.02460 0.91938 0.91995 0.89627 0.88763 0.94564 0.91216 0.77431 0.91479 0.82665 0.80966 0.82312 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.17 71.98 0.66 -2.67 16 2 C 0.08 2.19 2.31 30.60 0.07 2.26 16 3 H 0.10 2.19 6.31 -2.39 -0.02 2.17 16 4 C 0.14 5.14 5.37 86.38 0.46 5.61 16 5 N -0.75 -34.69 5.44 -467.40 -2.54 -37.23 16 6 C 0.54 31.87 7.75 86.36 0.67 32.54 16 7 O -0.63 -42.87 15.02 -4.29 -0.06 -42.93 16 8 C -0.58 -33.38 9.54 24.83 0.24 -33.14 16 9 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 10 C 0.03 1.71 5.50 85.30 0.47 2.18 16 11 N -0.82 -50.84 11.83 21.83 0.26 -50.58 16 12 Si 1.00 41.54 29.56 68.60 2.03 43.57 16 13 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 14 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 16 O -0.32 -9.70 9.54 -92.45 -0.88 -10.58 16 17 C 0.15 3.79 6.60 22.50 0.15 3.94 16 18 C -0.22 -4.10 8.24 22.37 0.18 -3.92 16 19 C -0.04 -0.60 10.04 22.25 0.22 -0.37 16 20 C -0.19 -3.27 10.02 22.33 0.22 -3.04 16 21 C 0.12 2.82 7.30 22.36 0.16 2.98 16 22 F -0.14 -3.55 17.27 44.97 0.78 -2.77 16 23 C -0.21 -5.65 9.97 22.41 0.22 -5.43 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.32 6.91 -2.39 -0.02 1.31 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 2.64 8.14 -2.38 -0.02 2.63 16 29 H 0.39 16.18 8.33 -92.71 -0.77 15.41 16 30 H 0.28 15.42 8.29 -92.71 -0.77 14.66 16 31 H 0.16 2.26 5.42 -2.91 -0.02 2.24 16 32 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -78.29 301.64 3.67 -74.62 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.36 Total: 24.97 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 3.74 Total: 0.94 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -2.29 Total: -87.81 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.95 Total: -53.51 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -78.29 3.67 -74.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153904276.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.607 kcal (2) G-P(sol) polarization free energy of solvation -78.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds