Wall clock time and date at job start Mon Mar 30 2020 00:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47075 * 2 1 4 4 C 1.53003 * 109.47046 * 119.99539 * 2 1 3 5 5 N 1.46506 * 109.47099 * 185.00215 * 4 2 1 6 6 C 1.34768 * 120.00173 * 180.02562 * 5 4 2 7 7 O 1.21697 * 119.99973 * 359.97438 * 6 5 4 8 8 C 1.46379 * 120.00351 * 179.97438 * 6 5 4 9 9 H 1.07997 * 119.99242 * 359.97438 * 8 6 5 10 10 C 1.40047 * 120.00051 * 179.97438 * 8 6 5 11 11 N 1.30670 * 120.00077 * 0.02562 * 10 8 6 12 12 Si 1.86795 * 119.99757 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47278 * 90.00109 * 12 10 8 14 14 H 1.48500 * 109.47461 * 210.00055 * 12 10 8 15 15 H 1.48499 * 109.47258 * 330.00243 * 12 10 8 16 16 O 1.42898 * 109.47531 * 239.99976 * 2 1 3 17 17 C 1.35957 * 117.00074 * 84.97553 * 16 2 1 18 18 C 1.38653 * 120.06091 * 354.52245 * 17 16 2 19 19 C 1.38189 * 119.96801 * 179.71772 * 18 17 16 20 20 C 1.38256 * 120.09290 * 0.55049 * 19 18 17 21 21 C 1.38258 * 120.12511 * 359.72825 * 20 19 18 22 22 C 1.38328 * 120.03189 * 359.97438 * 21 20 19 23 23 F 1.35103 * 120.04987 * 180.02562 * 22 21 20 24 24 H 1.08999 * 109.47094 * 60.00246 * 1 2 3 25 25 H 1.09001 * 109.46663 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47294 * 299.99844 * 1 2 3 27 27 H 1.08997 * 109.47246 * 305.00360 * 4 2 1 28 28 H 1.08997 * 109.46994 * 65.00745 * 4 2 1 29 29 H 0.97001 * 119.99687 * 359.97438 * 5 4 2 30 30 H 0.97003 * 119.99840 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.02157 * 359.96723 * 18 17 16 32 32 H 1.07996 * 119.95299 * 180.26954 * 19 18 17 33 33 H 1.08003 * 119.93912 * 179.74448 * 20 19 18 34 34 H 1.08002 * 119.98242 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.6177 1.3111 6 6 4.1731 -1.1832 2.3326 7 8 3.5680 -1.7794 3.2040 8 6 5.6320 -1.0804 2.3940 9 1 6.1690 -0.5517 1.6204 10 6 6.3313 -1.6676 3.4559 11 7 5.6815 -2.3077 4.3916 12 14 8.1930 -1.5369 3.5338 13 1 8.5724 -0.3143 4.2865 14 1 8.7449 -2.7322 4.2208 15 1 8.7420 -1.4603 2.1561 16 8 2.0064 -0.6736 -1.1667 17 6 2.1122 0.0628 -2.3047 18 6 1.6590 1.3729 -2.3288 19 6 1.7728 2.1215 -3.4848 20 6 2.3276 1.5624 -4.6210 21 6 2.7754 0.2545 -4.6030 22 6 2.6697 -0.4977 -3.4469 23 9 3.1077 -1.7756 -3.4287 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6053 -0.2616 2.1370 28 1 1.7517 -1.7714 1.2057 29 1 3.9824 -0.1429 0.6163 30 1 6.1658 -2.7141 5.1272 31 1 1.2210 1.8095 -1.4434 32 1 1.4237 3.1434 -3.5020 33 1 2.4115 2.1484 -5.5243 34 1 3.2081 -0.1802 -5.4920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153907227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:59 Heat of formation + Delta-G solvation = -126.141028 kcal Electronic energy + Delta-G solvation = -19792.634769 eV Core-core repulsion = 16411.167804 eV Total energy + Delta-G solvation = -3381.466965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.80582 -41.28002 -39.46721 -38.50893 -35.55670 -34.54872 -32.83152 -31.61759 -30.53557 -28.92980 -26.62214 -24.60115 -23.44864 -22.11348 -21.75776 -19.59857 -19.29427 -18.08431 -17.62656 -17.41427 -16.96349 -16.54769 -16.21371 -15.97898 -15.57567 -15.39312 -15.20291 -14.94164 -14.30032 -14.00529 -13.64887 -13.40549 -13.35675 -13.17268 -13.00944 -12.75587 -12.71604 -12.66121 -12.15555 -12.07351 -11.96115 -11.75012 -10.95338 -9.93344 -9.89910 -9.55729 -9.18584 -8.32236 -6.89303 0.15907 0.30426 1.38141 1.40252 1.55611 2.02500 2.23106 2.43910 2.64557 3.00391 3.28731 3.57954 3.59482 3.79262 3.92683 4.00733 4.06424 4.28247 4.35948 4.45904 4.60231 4.69229 4.79566 4.83485 5.02808 5.13966 5.17795 5.28654 5.29493 5.45566 5.76501 5.82464 6.13720 6.21035 6.35397 6.83373 7.45845 8.43838 8.63641 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.004649 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.718835 B = 6020.988837 C = 6693.005928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.083 3.917 3 H 0.098 0.902 4 C 0.136 3.864 5 N -0.754 5.754 6 C 0.537 3.463 7 O -0.631 6.631 8 C -0.575 4.575 9 H 0.084 0.916 10 C 0.029 3.971 11 N -0.821 5.821 12 Si 1.000 3.000 13 H -0.257 1.257 14 H -0.271 1.271 15 H -0.253 1.253 16 O -0.326 6.326 17 C 0.079 3.921 18 C -0.189 4.189 19 C -0.081 4.081 20 C -0.126 4.126 21 C -0.117 4.117 22 C 0.023 3.977 23 F -0.157 7.157 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.391 0.609 30 H 0.276 0.724 31 H 0.155 0.845 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 12.343 -18.166 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.027 3.973 3 H 0.115 0.885 4 C 0.012 3.988 5 N -0.409 5.409 6 C 0.341 3.659 7 O -0.519 6.519 8 C -0.612 4.612 9 H 0.102 0.898 10 C -0.186 4.186 11 N -0.450 5.450 12 Si 0.818 3.182 13 H -0.181 1.181 14 H -0.196 1.196 15 H -0.176 1.176 16 O -0.241 6.241 17 C 0.032 3.968 18 C -0.207 4.207 19 C -0.099 4.099 20 C -0.144 4.144 21 C -0.135 4.135 22 C 0.004 3.996 23 F -0.136 7.136 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.224 0.776 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.185 0.815 33 H 0.186 0.814 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.000 11.552 -17.336 22.316 hybrid contribution 0.856 -0.544 0.234 1.041 sum -7.145 11.008 -17.102 21.557 Atomic orbital electron populations 1.22285 0.91755 1.03818 1.04799 1.22799 0.96294 0.96668 0.81553 0.88454 1.21132 0.82583 0.99382 0.95753 1.45768 1.05891 1.61097 1.28097 1.18613 0.89148 0.78009 0.80104 1.90546 1.71174 1.48250 1.41918 1.21418 0.90606 1.38161 1.10972 0.89801 1.26986 1.06421 0.91821 0.93387 1.70182 1.39547 1.26027 1.09259 0.85000 0.74520 0.78861 0.79783 1.18128 1.19582 1.17595 1.86244 1.81577 1.39131 1.17154 1.19427 0.98413 0.92657 0.86254 1.21527 1.05133 0.91970 1.02105 1.21494 0.96243 1.01056 0.91107 1.21375 0.98938 0.93696 1.00382 1.21344 1.00780 0.95489 0.95925 1.17663 1.06042 0.80686 0.95241 1.91447 1.88042 1.36925 1.97181 0.89640 0.92130 0.88610 0.90968 0.94882 0.77563 0.91441 0.82771 0.81543 0.81360 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 9.17 71.98 0.66 -2.97 16 2 C 0.08 2.38 2.26 30.59 0.07 2.45 16 3 H 0.10 2.38 6.31 -2.39 -0.02 2.37 16 4 C 0.14 5.47 5.34 86.38 0.46 5.93 16 5 N -0.75 -36.23 5.50 -467.40 -2.57 -38.80 16 6 C 0.54 32.67 7.75 86.36 0.67 33.34 16 7 O -0.63 -43.77 15.02 -4.34 -0.07 -43.84 16 8 C -0.58 -34.07 9.54 24.83 0.24 -33.83 16 9 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 10 C 0.03 1.67 5.50 85.30 0.47 2.14 16 11 N -0.82 -51.53 11.83 21.84 0.26 -51.27 16 12 Si 1.00 42.16 29.56 68.60 2.03 44.19 16 13 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 14 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 15 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 16 O -0.33 -11.02 9.61 -93.07 -0.89 -11.92 16 17 C 0.08 2.21 6.61 22.53 0.15 2.35 16 18 C -0.19 -3.72 8.24 22.36 0.18 -3.53 16 19 C -0.08 -1.13 10.04 22.26 0.22 -0.90 16 20 C -0.13 -1.73 10.04 22.28 0.22 -1.51 16 21 C -0.12 -2.29 10.02 22.30 0.22 -2.06 16 22 C 0.02 0.66 7.31 22.45 0.16 0.83 16 23 F -0.16 -5.46 17.11 44.97 0.77 -4.69 16 24 H 0.08 1.47 6.91 -2.39 -0.02 1.45 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.39 16.94 8.45 -92.71 -0.78 16.15 16 30 H 0.28 15.59 8.29 -92.71 -0.77 14.82 16 31 H 0.15 2.46 5.43 -2.91 -0.02 2.44 16 32 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 33 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -83.16 301.76 3.61 -79.55 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.35 Total: 24.54 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 3.73 Total: 2.24 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -2.31 Total: -90.07 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.96 Total: -55.75 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.77 Total: -4.69 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -83.16 3.61 -79.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153907227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.590 kcal (2) G-P(sol) polarization free energy of solvation -83.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds