Wall clock time and date at job start Mon Mar 30 2020 00:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47315 * 2 1 4 4 C 1.53004 * 109.47260 * 240.00435 * 2 1 3 5 5 N 1.46504 * 109.47143 * 179.97438 * 4 2 1 6 6 C 1.34779 * 119.99635 * 179.72301 * 5 4 2 7 7 O 1.21690 * 120.00120 * 0.27628 * 6 5 4 8 8 C 1.46375 * 119.99702 * 180.27441 * 6 5 4 9 9 H 1.07998 * 119.99887 * 0.02562 * 8 6 5 10 10 C 1.40049 * 119.99673 * 179.97438 * 8 6 5 11 11 N 1.30671 * 120.00324 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99687 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47385 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47169 * 120.00277 * 12 10 8 15 15 H 1.48500 * 109.47099 * 240.00264 * 12 10 8 16 16 O 1.42902 * 109.47546 * 120.00291 * 2 1 3 17 17 C 1.35959 * 116.99508 * 275.17336 * 16 2 1 18 18 C 1.38651 * 120.06820 * 5.40732 * 17 16 2 19 19 C 1.38183 * 119.97202 * 179.72327 * 18 17 16 20 20 C 1.38258 * 120.09182 * 0.55536 * 19 18 17 21 21 C 1.38253 * 120.12945 * 359.72591 * 20 19 18 22 22 C 1.38336 * 120.02712 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.04757 * 180.02562 * 22 21 20 24 24 H 1.08997 * 109.47297 * 59.99827 * 1 2 3 25 25 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47031 * 299.99844 * 1 2 3 27 27 H 1.08997 * 109.47179 * 59.99666 * 4 2 1 28 28 H 1.09002 * 109.46602 * 300.00002 * 4 2 1 29 29 H 0.97000 * 119.99896 * 359.97438 * 5 4 2 30 30 H 0.96996 * 120.00082 * 179.97438 * 11 10 8 31 31 H 1.08009 * 120.01654 * 359.97438 * 18 17 16 32 32 H 1.08005 * 119.95576 * 180.28161 * 19 18 17 33 33 H 1.08000 * 119.93741 * 179.74493 * 20 19 18 34 34 H 1.08000 * 119.99276 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5051 -0.7206 -1.2496 6 6 4.1789 -1.3089 -2.2577 7 8 3.5705 -1.8362 -3.1702 8 6 5.6427 -1.3137 -2.2550 9 1 6.1826 -0.8461 -1.4449 10 6 6.3428 -1.9255 -3.3023 11 7 5.6895 -2.4916 -4.2821 12 14 8.2108 -1.9308 -3.2991 13 1 8.7059 -1.2289 -2.0877 14 1 8.7018 -3.3323 -3.2939 15 1 8.7099 -1.2360 -4.5130 16 8 2.0064 -0.6737 1.1667 17 6 2.1092 0.0620 2.3054 18 6 1.6546 1.3716 2.3298 19 6 1.7548 2.1157 3.4899 20 6 2.3183 1.5599 4.6234 21 6 2.7783 0.2563 4.6020 22 6 2.6749 -0.4953 3.4452 23 9 3.1237 -1.7694 3.4239 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 -0.2073 -2.1392 28 1 1.6767 -1.7488 -1.2493 29 1 3.9900 -0.3000 -0.5224 30 1 6.1745 -2.9150 -5.0076 31 1 1.2185 1.8088 1.4436 32 1 1.3964 3.1344 3.5098 33 1 2.3991 2.1451 5.5276 34 1 3.2185 -0.1756 5.4886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153907325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:02 Heat of formation + Delta-G solvation = -100.088524 kcal Electronic energy + Delta-G solvation = -19814.241053 eV Core-core repulsion = 16433.903810 eV Total energy + Delta-G solvation = -3380.337243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.68914 -40.23785 -37.93697 -36.95014 -33.83301 -32.40652 -31.32609 -30.73446 -29.63935 -26.95739 -24.96393 -23.61381 -22.54200 -20.91271 -19.66524 -18.57878 -17.39950 -16.98482 -16.48402 -15.87634 -15.32091 -15.27602 -15.03141 -14.60901 -14.45569 -13.85622 -13.72649 -13.36404 -12.92086 -12.75772 -12.39098 -12.24381 -12.14138 -11.90832 -11.52172 -11.22722 -11.21197 -10.98050 -10.86187 -10.58521 -10.40985 -10.15809 -9.06056 -8.83168 -8.23303 -7.60369 -7.50121 -6.16117 -4.60745 0.99755 1.16013 3.07474 3.15572 3.23610 3.28570 3.46727 4.12850 4.19616 4.58245 4.61511 4.62003 4.69602 4.84655 5.05596 5.08936 5.11436 5.30391 5.37853 5.60011 5.68216 5.79521 5.86170 5.93310 6.04647 6.06068 6.22285 6.26096 6.41710 6.60814 7.35909 7.46787 7.94329 8.09259 8.35795 9.05707 9.54401 10.62364 10.80687 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.004719 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.120663 B = 5931.797423 C = 6658.673473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.077 0.923 4 C 0.139 3.861 5 N -0.765 5.765 6 C 0.555 3.445 7 O -0.582 6.582 8 C -0.544 4.544 9 H 0.068 0.932 10 C 0.088 3.912 11 N -0.769 5.769 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 O -0.291 6.291 17 C 0.108 3.892 18 C -0.188 4.188 19 C -0.091 4.091 20 C -0.137 4.137 21 C -0.118 4.118 22 C 0.066 3.934 23 F -0.130 7.130 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.381 0.619 30 H 0.267 0.733 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 9.772 16.033 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.421 5.421 6 C 0.359 3.641 7 O -0.465 6.465 8 C -0.581 4.581 9 H 0.086 0.914 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.732 3.268 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.202 1.202 16 O -0.204 6.204 17 C 0.061 3.939 18 C -0.206 4.206 19 C -0.109 4.109 20 C -0.156 4.156 21 C -0.137 4.137 22 C 0.046 3.954 23 F -0.109 7.109 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.213 0.787 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.594 9.009 15.109 19.578 hybrid contribution 1.111 0.165 0.319 1.167 sum -7.483 9.174 15.428 19.447 Atomic orbital electron populations 1.22319 0.94455 1.03862 1.02822 1.22934 0.94497 0.97074 0.83960 0.90467 1.21001 0.84930 1.00102 0.92602 1.46066 1.03478 1.64553 1.27980 1.18223 0.88396 0.77487 0.79971 1.90595 1.70196 1.48853 1.36867 1.20914 0.89707 1.38854 1.08590 0.91419 1.25704 0.99869 0.93201 0.94414 1.70032 1.36326 1.26021 1.07367 0.86321 0.83198 0.78466 0.78807 1.18777 1.20131 1.20165 1.86324 1.80528 1.37598 1.15997 1.19132 0.96453 0.91284 0.87055 1.21270 1.05659 0.93268 1.00448 1.20996 0.97988 0.99772 0.92161 1.20872 1.00978 0.94645 0.99065 1.21015 1.01269 0.94849 0.96562 1.17075 1.03569 0.81167 0.93577 1.91529 1.87015 1.35392 1.96942 0.90448 0.90992 0.91906 0.91138 0.92181 0.78740 0.92192 0.84283 0.85272 0.85123 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.17 37.16 0.34 -1.66 16 2 C 0.07 1.04 2.31 -26.73 -0.06 0.97 16 3 H 0.08 1.00 6.32 -51.93 -0.33 0.67 16 4 C 0.14 2.68 5.37 -4.04 -0.02 2.66 16 5 N -0.76 -17.83 5.44 -61.72 -0.34 -18.17 16 6 C 0.56 16.29 7.75 -12.99 -0.10 16.18 16 7 O -0.58 -19.23 15.02 5.20 0.08 -19.15 16 8 C -0.54 -15.85 9.54 -35.63 -0.34 -16.19 16 9 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 10 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 11 N -0.77 -23.50 11.83 55.55 0.66 -22.84 16 12 Si 0.91 20.62 29.56 -169.99 -5.02 15.60 16 13 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 O -0.29 -4.80 9.41 -19.61 -0.18 -4.98 16 17 C 0.11 1.53 6.60 -39.18 -0.26 1.28 16 18 C -0.19 -2.09 8.24 -39.45 -0.32 -2.42 16 19 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 20 C -0.14 -1.23 10.04 -39.57 -0.40 -1.62 16 21 C -0.12 -1.27 10.02 -39.54 -0.40 -1.67 16 22 C 0.07 0.94 7.31 -39.30 -0.29 0.65 16 23 F -0.13 -2.15 17.11 2.25 0.04 -2.11 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.61 6.90 -51.93 -0.36 0.26 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.38 8.15 8.33 -40.82 -0.34 7.81 16 30 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 31 H 0.14 1.34 5.43 -52.48 -0.28 1.05 16 32 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 301.44 15.07 4.54 4.54 Total: -1.00 -35.90 301.44 -6.39 -42.29 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.82 Total: 5.45 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.34 Total: -0.63 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.32 Total: -41.01 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.11 Total: -24.13 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.90 -6.39 -42.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153907325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.802 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds