Wall clock time and date at job start Mon Mar 30 2020 00:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47315 * 2 1 4 4 C 1.53004 * 109.47260 * 240.00435 * 2 1 3 5 5 N 1.46504 * 109.47143 * 179.97438 * 4 2 1 6 6 C 1.34779 * 119.99635 * 179.72301 * 5 4 2 7 7 O 1.21690 * 120.00120 * 0.27628 * 6 5 4 8 8 C 1.46375 * 119.99702 * 180.27441 * 6 5 4 9 9 H 1.07998 * 119.99887 * 0.02562 * 8 6 5 10 10 C 1.40049 * 119.99673 * 179.97438 * 8 6 5 11 11 N 1.30671 * 120.00324 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99687 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47385 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47169 * 120.00277 * 12 10 8 15 15 H 1.48500 * 109.47099 * 240.00264 * 12 10 8 16 16 O 1.42902 * 109.47546 * 120.00291 * 2 1 3 17 17 C 1.35959 * 116.99508 * 275.17336 * 16 2 1 18 18 C 1.38651 * 120.06820 * 5.40732 * 17 16 2 19 19 C 1.38183 * 119.97202 * 179.72327 * 18 17 16 20 20 C 1.38258 * 120.09182 * 0.55536 * 19 18 17 21 21 C 1.38253 * 120.12945 * 359.72591 * 20 19 18 22 22 C 1.38336 * 120.02712 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.04757 * 180.02562 * 22 21 20 24 24 H 1.08997 * 109.47297 * 59.99827 * 1 2 3 25 25 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47031 * 299.99844 * 1 2 3 27 27 H 1.08997 * 109.47179 * 59.99666 * 4 2 1 28 28 H 1.09002 * 109.46602 * 300.00002 * 4 2 1 29 29 H 0.97000 * 119.99896 * 359.97438 * 5 4 2 30 30 H 0.96996 * 120.00082 * 179.97438 * 11 10 8 31 31 H 1.08009 * 120.01654 * 359.97438 * 18 17 16 32 32 H 1.08005 * 119.95576 * 180.28161 * 19 18 17 33 33 H 1.08000 * 119.93741 * 179.74493 * 20 19 18 34 34 H 1.08000 * 119.99276 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5051 -0.7206 -1.2496 6 6 4.1789 -1.3089 -2.2577 7 8 3.5705 -1.8362 -3.1702 8 6 5.6427 -1.3137 -2.2550 9 1 6.1826 -0.8461 -1.4449 10 6 6.3428 -1.9255 -3.3023 11 7 5.6895 -2.4916 -4.2821 12 14 8.2108 -1.9308 -3.2991 13 1 8.7059 -1.2289 -2.0877 14 1 8.7018 -3.3323 -3.2939 15 1 8.7099 -1.2360 -4.5130 16 8 2.0064 -0.6737 1.1667 17 6 2.1092 0.0620 2.3054 18 6 1.6546 1.3716 2.3298 19 6 1.7548 2.1157 3.4899 20 6 2.3183 1.5599 4.6234 21 6 2.7783 0.2563 4.6020 22 6 2.6749 -0.4953 3.4452 23 9 3.1237 -1.7694 3.4239 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 -0.2073 -2.1392 28 1 1.6767 -1.7488 -1.2493 29 1 3.9900 -0.3000 -0.5224 30 1 6.1745 -2.9150 -5.0076 31 1 1.2185 1.8088 1.4436 32 1 1.3964 3.1344 3.5098 33 1 2.3991 2.1451 5.5276 34 1 3.2185 -0.1756 5.4886 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153907325.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:02 Heat of formation + Delta-G solvation = -125.991497 kcal Electronic energy + Delta-G solvation = -19815.364290 eV Core-core repulsion = 16433.903810 eV Total energy + Delta-G solvation = -3381.460481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.80188 -41.28003 -39.46540 -38.50556 -35.54509 -34.54827 -32.83788 -31.61386 -30.53404 -28.93064 -26.62077 -24.59706 -23.44568 -22.11520 -21.74321 -19.59259 -19.29926 -18.08188 -17.62969 -17.41828 -16.95840 -16.54622 -16.21859 -15.97578 -15.56513 -15.38436 -15.20114 -14.94686 -14.30054 -14.00903 -13.65523 -13.40497 -13.33897 -13.17228 -13.00786 -12.77317 -12.72733 -12.66397 -12.14812 -12.04790 -11.94634 -11.74600 -10.97016 -9.93103 -9.89708 -9.55170 -9.18360 -8.32549 -6.89363 0.16125 0.30574 1.37926 1.38668 1.56664 2.02304 2.23034 2.43696 2.64756 3.01195 3.29078 3.57720 3.59787 3.79481 3.92581 4.00944 4.06452 4.28733 4.36154 4.46439 4.59868 4.69473 4.79626 4.83563 5.02970 5.14193 5.17969 5.28768 5.29652 5.45699 5.76565 5.82611 6.13887 6.21251 6.35795 6.83353 7.45838 8.43760 8.63558 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.004719 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.120663 B = 5931.797423 C = 6658.673473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.082 3.918 3 H 0.098 0.902 4 C 0.136 3.864 5 N -0.754 5.754 6 C 0.537 3.463 7 O -0.631 6.631 8 C -0.575 4.575 9 H 0.083 0.917 10 C 0.029 3.971 11 N -0.821 5.821 12 Si 0.999 3.001 13 H -0.250 1.250 14 H -0.268 1.268 15 H -0.263 1.263 16 O -0.326 6.326 17 C 0.078 3.922 18 C -0.189 4.189 19 C -0.081 4.081 20 C -0.126 4.126 21 C -0.117 4.117 22 C 0.024 3.976 23 F -0.157 7.157 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.391 0.609 30 H 0.276 0.724 31 H 0.155 0.845 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 12.487 18.079 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.027 3.973 3 H 0.116 0.884 4 C 0.011 3.989 5 N -0.408 5.408 6 C 0.341 3.659 7 O -0.519 6.519 8 C -0.611 4.611 9 H 0.101 0.899 10 C -0.186 4.186 11 N -0.450 5.450 12 Si 0.818 3.182 13 H -0.173 1.173 14 H -0.193 1.193 15 H -0.188 1.188 16 O -0.241 6.241 17 C 0.032 3.968 18 C -0.207 4.207 19 C -0.099 4.099 20 C -0.144 4.144 21 C -0.136 4.136 22 C 0.004 3.996 23 F -0.136 7.136 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.224 0.776 30 H 0.086 0.914 31 H 0.172 0.828 32 H 0.185 0.815 33 H 0.186 0.814 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.029 11.761 17.215 22.341 hybrid contribution 0.852 -0.605 -0.205 1.064 sum -7.177 11.156 17.010 21.571 Atomic orbital electron populations 1.22287 0.91780 1.03787 1.04810 1.22806 0.96299 0.96666 0.81559 0.88448 1.21149 0.82403 0.99471 0.95843 1.45753 1.05365 1.63039 1.26649 1.18613 0.89245 0.77523 0.80490 1.90543 1.71195 1.51104 1.39018 1.21442 0.90210 1.39710 1.09750 0.89888 1.26983 1.06511 0.91833 0.93280 1.70184 1.39471 1.26889 1.08457 0.84954 0.74565 0.78977 0.79666 1.17267 1.19289 1.18797 1.86245 1.81567 1.39153 1.17088 1.19427 0.98414 0.92651 0.86265 1.21526 1.05171 0.91988 1.02039 1.21493 0.96288 1.01054 0.91079 1.21373 0.98826 0.93761 1.00431 1.21344 1.00812 0.95500 0.95900 1.17667 1.05742 0.80887 0.95310 1.91448 1.87678 1.37278 1.97177 0.88580 0.92189 0.89637 0.91016 0.94821 0.77587 0.91436 0.82759 0.81542 0.81372 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 9.17 71.98 0.66 -2.96 16 2 C 0.08 2.37 2.31 30.60 0.07 2.44 16 3 H 0.10 2.37 6.32 -2.39 -0.02 2.36 16 4 C 0.14 5.46 5.37 86.38 0.46 5.92 16 5 N -0.75 -36.40 5.44 -467.39 -2.54 -38.95 16 6 C 0.54 32.77 7.75 86.36 0.67 33.43 16 7 O -0.63 -43.77 15.02 -4.32 -0.06 -43.84 16 8 C -0.57 -34.18 9.54 24.83 0.24 -33.94 16 9 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 10 C 0.03 1.67 5.50 85.30 0.47 2.14 16 11 N -0.82 -51.55 11.83 21.84 0.26 -51.29 16 12 Si 1.00 42.32 29.56 68.60 2.03 44.35 16 13 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 14 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 15 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 16 O -0.33 -11.00 9.41 -93.09 -0.88 -11.88 16 17 C 0.08 2.20 6.60 22.53 0.15 2.35 16 18 C -0.19 -3.71 8.24 22.36 0.18 -3.52 16 19 C -0.08 -1.13 10.04 22.26 0.22 -0.90 16 20 C -0.13 -1.73 10.04 22.28 0.22 -1.51 16 21 C -0.12 -2.29 10.02 22.30 0.22 -2.07 16 22 C 0.02 0.67 7.31 22.45 0.16 0.84 16 23 F -0.16 -5.47 17.11 44.97 0.77 -4.70 16 24 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 1.46 6.90 -2.39 -0.02 1.45 16 27 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.39 17.15 8.33 -92.71 -0.77 16.38 16 30 H 0.28 15.56 8.29 -92.71 -0.77 14.79 16 31 H 0.15 2.45 5.43 -2.91 -0.02 2.43 16 32 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -83.22 301.44 3.67 -79.55 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.36 Total: 24.54 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 3.74 Total: 2.22 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -2.29 Total: -90.24 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -0.94 Total: -55.71 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.77 Total: -4.70 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -83.22 3.67 -79.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153907325.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.443 kcal (2) G-P(sol) polarization free energy of solvation -83.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds