Wall clock time and date at job start Mon Mar 30 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47220 * 2 1 4 4 C 1.46504 * 119.99948 * 274.96500 * 3 2 1 5 5 C 1.50705 * 109.47218 * 270.00242 * 4 3 2 6 6 H 1.08000 * 119.99197 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00044 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00207 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99815 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46982 * 90.00053 * 9 7 5 11 11 H 1.48504 * 109.46704 * 209.99402 * 9 7 5 12 12 H 1.48491 * 109.47187 * 329.99457 * 9 7 5 13 13 C 1.34770 * 120.00360 * 94.96495 * 3 2 1 14 14 O 1.21605 * 120.00260 * 185.56496 * 13 3 2 15 15 C 1.47453 * 119.99891 * 5.56326 * 13 3 2 16 16 C 1.39807 * 120.11234 * 55.03315 * 15 13 3 17 17 C 1.37604 * 119.93789 * 180.25520 * 16 15 13 18 18 C 1.39104 * 120.15867 * 359.44654 * 17 16 15 19 19 O 1.35703 * 119.88871 * 180.25663 * 18 17 16 20 20 C 1.38835 * 120.21773 * 0.55462 * 18 17 16 21 21 C 1.38055 * 120.06941 * 359.72447 * 20 18 17 22 22 F 1.35097 * 120.08169 * 179.97438 * 21 20 18 23 23 H 1.09000 * 109.46881 * 60.00704 * 1 2 3 24 24 H 1.09000 * 109.46800 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47374 * 300.00602 * 1 2 3 26 26 H 1.09005 * 109.47461 * 239.99306 * 2 1 3 27 27 H 1.09010 * 109.47082 * 119.99764 * 2 1 3 28 28 H 1.09005 * 109.46698 * 29.99902 * 4 3 2 29 29 H 1.08999 * 109.47248 * 149.99469 * 4 3 2 30 30 H 0.96993 * 120.00449 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.03279 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.92169 * 179.71787 * 17 16 15 33 33 H 0.96699 * 114.00210 * 270.29665 * 19 18 17 34 34 H 1.08010 * 119.96284 * 179.74454 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1590 2.1084 -1.2640 5 6 3.5418 1.8859 -1.8204 6 1 4.2454 1.2652 -1.2857 7 6 3.9087 2.4755 -3.0115 8 7 3.0519 3.2317 -3.6624 9 14 5.6229 2.2002 -3.7008 10 1 5.6162 1.0044 -4.5813 11 1 6.0377 3.3905 -4.4858 12 1 6.5773 1.9869 -2.5834 13 6 2.3382 1.9829 1.1627 14 8 2.6464 3.1592 1.1740 15 6 2.3144 1.2149 2.4212 16 6 3.0570 0.0361 2.5377 17 6 3.0281 -0.6806 3.7120 18 6 2.2707 -0.2290 4.7879 19 8 2.2502 -0.9374 5.9452 20 6 1.5308 0.9407 4.6794 21 6 1.5486 1.6640 3.5036 22 9 0.8283 2.8020 3.3976 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8898 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.4180 1.7455 -1.9763 29 1 2.0044 3.1732 -1.0897 30 1 3.3098 3.6462 -4.5005 31 1 3.6493 -0.3142 1.7052 32 1 3.5982 -1.5936 3.8001 33 1 1.5537 -1.6070 5.9842 34 1 0.9409 1.2854 5.5160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154817611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:44 Heat of formation + Delta-G solvation = -119.229643 kcal Electronic energy + Delta-G solvation = -20331.201214 eV Core-core repulsion = 16950.033949 eV Total energy + Delta-G solvation = -3381.167265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.09479 -41.34338 -40.07496 -37.43999 -37.07541 -34.90322 -32.06535 -31.65528 -31.29615 -28.94880 -25.59541 -24.80249 -23.85307 -23.51230 -20.63493 -19.75276 -18.69774 -18.33951 -17.90680 -17.64373 -17.25062 -16.76221 -16.37419 -16.06195 -15.75939 -15.31649 -14.89634 -14.76953 -14.62710 -14.30512 -13.86690 -13.60521 -13.33214 -13.21383 -12.98734 -12.85999 -12.65065 -12.50547 -12.20128 -11.96326 -11.75236 -11.72446 -10.87293 -10.65556 -10.06501 -9.79059 -9.50029 -8.23865 -6.39574 -0.31826 0.02860 1.36968 1.40684 1.50643 1.63074 2.13672 2.34776 2.44765 2.83892 3.06094 3.31273 3.48956 3.67844 3.99439 4.09567 4.16288 4.36480 4.52568 4.58618 4.72675 4.89067 4.90364 4.91429 5.00323 5.09056 5.15256 5.18025 5.31632 5.53032 5.59014 5.79301 6.02054 6.59869 6.69865 6.81396 7.18465 7.34919 8.83966 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.005279 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.062495 B = 5302.342080 C = 5492.574756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 N -0.590 5.590 4 C 0.260 3.740 5 C -0.545 4.545 6 H 0.059 0.941 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.972 3.028 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.542 3.458 14 O -0.593 6.593 15 C -0.181 4.181 16 C -0.044 4.044 17 C -0.139 4.139 18 C 0.170 3.830 19 O -0.493 6.493 20 C -0.181 4.181 21 C 0.132 3.868 22 F -0.146 7.146 23 H 0.039 0.961 24 H 0.102 0.898 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.027 0.973 29 H -0.006 1.006 30 H 0.268 0.732 31 H 0.152 0.848 32 H 0.178 0.822 33 H 0.423 0.577 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 -15.721 16.241 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.031 4.031 3 N -0.319 5.319 4 C 0.139 3.861 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.331 3.669 14 O -0.475 6.475 15 C -0.185 4.185 16 C -0.063 4.063 17 C -0.158 4.158 18 C 0.124 3.876 19 O -0.308 6.308 20 C -0.200 4.200 21 C 0.112 3.888 22 F -0.125 7.125 23 H 0.059 0.941 24 H 0.120 0.880 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.124 0.876 28 H 0.045 0.955 29 H 0.012 0.988 30 H 0.076 0.924 31 H 0.170 0.830 32 H 0.196 0.804 33 H 0.285 0.715 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.575 -14.652 16.194 22.129 hybrid contribution 0.038 0.790 -1.013 1.285 sum -3.537 -13.862 15.181 20.859 Atomic orbital electron populations 1.22118 0.94991 1.03623 1.01069 1.22009 0.95287 0.81224 1.04554 1.48205 1.62140 1.15415 1.06180 1.18795 0.96393 0.90992 0.79909 1.21690 0.99099 1.31037 1.06490 0.92258 1.25909 1.01994 0.94259 0.97017 1.70066 1.37293 1.32716 1.16818 0.85348 0.78594 0.78181 0.78282 1.18478 1.20865 1.19547 1.18671 0.77274 0.86355 0.84647 1.90745 1.50785 1.18476 1.87455 1.20050 1.04926 0.99827 0.93671 1.21167 0.95312 0.90277 0.99501 1.21694 1.01216 1.02347 0.90499 1.18210 0.93274 0.90447 0.85647 1.84726 1.59147 1.53764 1.33191 1.21450 1.04239 0.97768 0.96535 1.17701 0.93050 0.83538 0.94504 1.91503 1.75663 1.48670 1.96617 0.94148 0.87974 0.93626 0.89907 0.87553 0.95525 0.98796 0.92354 0.83030 0.80445 0.71515 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 10.24 71.98 0.74 -3.65 16 2 C 0.09 2.88 5.95 86.38 0.51 3.39 16 3 N -0.59 -26.44 2.46 -829.98 -2.04 -28.48 16 4 C 0.26 14.53 5.23 85.63 0.45 14.98 16 5 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 6 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.54 25.16 6.83 86.67 0.59 25.76 16 14 O -0.59 -34.29 16.45 -4.05 -0.07 -34.36 16 15 C -0.18 -6.12 4.91 -20.05 -0.10 -6.22 16 16 C -0.04 -1.07 7.46 22.50 0.17 -0.90 16 17 C -0.14 -2.28 9.96 22.33 0.22 -2.06 16 18 C 0.17 2.81 6.71 22.62 0.15 2.96 16 19 O -0.49 -5.50 13.48 -90.24 -1.22 -6.72 16 20 C -0.18 -3.87 9.95 22.37 0.22 -3.65 16 21 C 0.13 4.13 7.27 22.65 0.16 4.29 16 22 F -0.15 -5.46 16.68 44.97 0.75 -4.71 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 2.62 8.11 -2.38 -0.02 2.60 16 27 H 0.11 2.63 4.42 -2.38 -0.01 2.62 16 28 H 0.03 1.50 8.07 -2.38 -0.02 1.48 16 29 H -0.01 -0.40 7.35 -2.39 -0.02 -0.42 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.15 3.47 7.57 -2.91 -0.02 3.44 16 32 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.42 0.06 9.06 -74.06 -0.67 -0.61 16 34 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -82.03 303.80 4.03 -78.00 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 0.46 Total: 1.70 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 3.82 Total: 4.40 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.75 Total: -85.16 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.28 Total: -41.08 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.75 Total: -4.71 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -82.03 4.03 -78.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154817611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.228 kcal (2) G-P(sol) polarization free energy of solvation -82.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds