Wall clock time and date at job start Mon Mar 30 2020 00:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46826 * 2 1 4 4 C 1.50697 * 109.47478 * 120.00118 * 2 1 3 5 5 H 1.07998 * 120.00122 * 120.00063 * 4 2 1 6 6 C 1.37875 * 119.99840 * 300.00195 * 4 2 1 7 7 N 1.31512 * 120.00223 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00035 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46781 * 89.99958 * 8 6 4 10 10 H 1.48499 * 109.47202 * 209.99973 * 8 6 4 11 11 H 1.48494 * 109.47122 * 330.00558 * 8 6 4 12 12 S 1.81404 * 109.47146 * 240.00386 * 2 1 3 13 13 C 1.76198 * 103.00017 * 172.12148 * 12 2 1 14 14 C 1.38733 * 120.10023 * 354.28206 * 13 12 2 15 15 C 1.38254 * 119.99132 * 179.97438 * 14 13 12 16 16 C 1.38264 * 120.19576 * 0.02562 * 15 14 13 17 17 C 1.38284 * 120.20802 * 359.68358 * 16 15 14 18 18 C 1.38650 * 120.00206 * 0.59458 * 17 16 15 19 19 N 1.40002 * 120.09787 * 179.70196 * 18 17 16 20 20 C 1.46492 * 120.00165 * 359.72509 * 19 18 17 21 21 C 1.53003 * 109.47193 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.47219 * 65.00100 * 21 20 19 23 23 H 1.08998 * 109.47378 * 66.03147 * 1 2 3 24 24 H 1.09003 * 109.47260 * 186.03175 * 1 2 3 25 25 H 1.09001 * 109.47430 * 306.02860 * 1 2 3 26 26 H 0.97001 * 119.99928 * 180.02562 * 7 6 4 27 27 H 1.08003 * 120.00569 * 359.97438 * 14 13 12 28 28 H 1.07996 * 119.89614 * 179.97438 * 15 14 13 29 29 H 1.08003 * 119.89265 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99987 * 180.29878 * 17 16 15 31 31 H 0.97004 * 119.99649 * 179.72519 * 19 18 17 32 32 H 1.08997 * 109.47342 * 60.00175 * 20 19 18 33 33 H 1.09001 * 109.47448 * 299.99832 * 20 19 18 34 34 H 1.09003 * 109.46927 * 185.00462 * 21 20 19 35 35 H 1.09002 * 109.47075 * 304.99672 * 21 20 19 36 36 H 0.96700 * 114.00027 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5458 4.4122 10 1 1.3432 -0.9493 5.1120 11 1 2.4861 -2.5662 3.7119 12 16 2.1346 -0.8550 -1.4812 13 6 3.8701 -0.5547 -1.4316 14 6 4.4030 0.2886 -0.4673 15 6 5.7651 0.5222 -0.4301 16 6 6.5998 -0.0818 -1.3521 17 6 6.0781 -0.9285 -2.3130 18 6 4.7127 -1.1643 -2.3617 19 7 4.1817 -2.0162 -3.3376 20 6 5.0683 -2.6553 -4.3130 21 6 4.2411 -3.5275 -5.2595 22 8 3.3671 -2.6992 -6.0289 23 1 -0.3634 0.4175 -0.9390 24 1 -0.3634 -1.0220 0.1080 25 1 -0.3634 0.6045 0.8311 26 1 0.7096 1.1617 3.4844 27 1 3.7538 0.7624 0.2542 28 1 6.1782 1.1792 0.3209 29 1 7.6631 0.1045 -1.3188 30 1 6.7337 -1.4023 -3.0286 31 1 3.2266 -2.1833 -3.3678 32 1 5.7967 -3.2753 -3.7904 33 1 5.5890 -1.8891 -4.8875 34 1 4.9080 -4.0718 -5.9281 35 1 3.6515 -4.2365 -4.6782 36 1 2.8107 -3.1865 -6.6519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154888439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:35 Heat of formation + Delta-G solvation = -32.033998 kcal Electronic energy + Delta-G solvation = -17927.775114 eV Core-core repulsion = 15116.602112 eV Total energy + Delta-G solvation = -2811.173002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.82805 -37.25905 -34.85651 -34.01471 -30.58129 -30.42569 -29.86601 -27.15003 -25.29976 -23.23973 -22.09392 -21.25206 -20.49945 -17.77465 -17.19843 -16.40351 -16.03181 -15.84992 -15.05662 -14.67097 -14.06590 -13.83943 -13.62871 -13.32272 -13.19774 -12.97094 -12.80076 -12.18488 -11.66779 -11.51117 -11.34748 -11.07001 -10.95295 -10.66880 -10.45251 -10.33013 -10.23866 -9.92662 -9.66607 -9.30474 -8.89376 -8.82483 -8.42382 -7.26938 -6.29374 -6.00622 -4.21765 1.98575 2.21895 2.78798 3.26270 3.32811 3.37450 3.66302 3.90256 4.07359 4.37029 4.46614 4.88826 5.03358 5.16124 5.17605 5.44314 5.58224 5.65529 5.74017 5.88144 6.15032 6.28423 6.58356 6.66805 6.75233 6.78183 6.88250 6.98629 7.25314 7.36555 7.41652 7.47794 7.63206 7.80057 7.85061 8.07204 8.14742 8.79507 9.42562 10.91177 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.005909 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.040334 B = 4737.722378 C = 5430.261769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.098 3.902 3 H 0.049 0.951 4 C -0.515 4.515 5 H 0.066 0.934 6 C 0.069 3.931 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.273 1.273 12 S -0.204 6.204 13 C -0.119 4.119 14 C -0.067 4.067 15 C -0.166 4.166 16 C -0.094 4.094 17 C -0.197 4.197 18 C 0.220 3.780 19 N -0.741 5.741 20 C 0.130 3.870 21 C 0.065 3.935 22 O -0.567 6.567 23 H 0.019 0.981 24 H 0.038 0.962 25 H 0.096 0.904 26 H 0.264 0.736 27 H 0.145 0.855 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.406 0.594 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 -5.746 -11.978 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.030 4.030 3 H 0.067 0.933 4 C -0.554 4.554 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.197 1.197 12 S 0.041 5.959 13 C -0.236 4.236 14 C -0.092 4.092 15 C -0.188 4.188 16 C -0.115 4.115 17 C -0.222 4.222 18 C 0.112 3.888 19 N -0.375 5.375 20 C 0.005 3.995 21 C -0.014 4.014 22 O -0.372 6.372 23 H 0.038 0.962 24 H 0.058 0.942 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.162 0.838 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.242 0.758 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.775 -5.863 -12.417 15.312 hybrid contribution 0.528 -0.348 1.515 1.642 sum 7.304 -6.210 -10.901 14.517 Atomic orbital electron populations 1.21622 0.95272 1.01188 1.00229 1.21045 0.95754 0.96666 0.89497 0.93261 1.21264 1.31901 1.12893 0.89316 0.91570 1.24955 0.94716 0.94891 0.98894 1.69873 1.36202 1.22672 1.23895 0.86496 0.78640 0.80271 0.82191 1.20438 1.21119 1.19736 1.84398 0.99157 1.73146 1.39227 1.21081 0.96995 1.04705 1.00832 1.21425 0.95672 0.95643 0.96412 1.20818 0.93498 1.03623 1.00849 1.20734 0.98678 0.96979 0.95119 1.20331 0.92497 1.05930 1.03422 1.17351 0.91729 0.90752 0.88924 1.44575 1.09512 1.51180 1.32192 1.21262 0.92782 0.96023 0.89472 1.22409 0.92816 0.92788 0.93346 1.86586 1.56466 1.37389 1.56749 0.96160 0.94250 0.88522 0.92627 0.83779 0.86883 0.87048 0.86910 0.75755 0.91350 0.91989 0.92408 0.92900 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.88 37.16 0.33 -2.61 16 2 C 0.10 2.43 2.01 -27.89 -0.06 2.38 16 3 H 0.05 1.31 7.00 -51.92 -0.36 0.95 16 4 C -0.51 -13.73 6.90 -34.44 -0.24 -13.96 16 5 H 0.07 1.84 7.71 -52.49 -0.40 1.43 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -24.28 11.39 55.43 0.63 -23.65 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 S -0.20 -4.53 19.77 -107.50 -2.13 -6.66 16 13 C -0.12 -2.56 6.05 -38.92 -0.24 -2.79 16 14 C -0.07 -1.44 8.80 -39.39 -0.35 -1.79 16 15 C -0.17 -3.07 10.04 -39.57 -0.40 -3.46 16 16 C -0.09 -1.53 10.04 -39.55 -0.40 -1.93 16 17 C -0.20 -3.28 9.31 -39.41 -0.37 -3.64 16 18 C 0.22 4.12 6.66 -83.49 -0.56 3.57 16 19 N -0.74 -12.10 5.63 -58.45 -0.33 -12.43 16 20 C 0.13 1.57 5.30 -4.04 -0.02 1.55 16 21 C 0.06 0.62 7.18 37.16 0.27 0.89 16 22 O -0.57 -6.21 13.60 -35.23 -0.48 -6.69 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 2.47 6.26 -51.93 -0.32 2.14 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.14 3.42 5.09 -52.48 -0.27 3.15 16 28 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.11 1.56 6.74 -52.49 -0.35 1.20 16 31 H 0.41 6.99 7.02 -40.82 -0.29 6.70 16 32 H 0.07 0.74 7.94 -51.93 -0.41 0.32 16 33 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.38 2.29 9.12 45.56 0.42 2.71 16 LS Contribution 309.56 15.07 4.67 4.67 Total: -1.00 -29.75 309.56 -8.85 -38.60 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -4.08 Total: 10.19 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.11 Total: -20.06 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.30 Total: -36.08 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.48 Total: -6.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -2.13 Total: -6.66 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.75 -8.85 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154888439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.566 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds