Wall clock time and date at job start Mon Mar 30 2020 00:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46826 * 2 1 4 4 C 1.50697 * 109.47478 * 120.00118 * 2 1 3 5 5 H 1.07998 * 120.00122 * 120.00063 * 4 2 1 6 6 C 1.37875 * 119.99840 * 300.00195 * 4 2 1 7 7 N 1.31512 * 120.00223 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00035 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46781 * 89.99958 * 8 6 4 10 10 H 1.48499 * 109.47202 * 209.99973 * 8 6 4 11 11 H 1.48494 * 109.47122 * 330.00558 * 8 6 4 12 12 S 1.81404 * 109.47146 * 240.00386 * 2 1 3 13 13 C 1.76198 * 103.00017 * 172.12148 * 12 2 1 14 14 C 1.38733 * 120.10023 * 354.28206 * 13 12 2 15 15 C 1.38254 * 119.99132 * 179.97438 * 14 13 12 16 16 C 1.38264 * 120.19576 * 0.02562 * 15 14 13 17 17 C 1.38284 * 120.20802 * 359.68358 * 16 15 14 18 18 C 1.38650 * 120.00206 * 0.59458 * 17 16 15 19 19 N 1.40002 * 120.09787 * 179.70196 * 18 17 16 20 20 C 1.46492 * 120.00165 * 359.72509 * 19 18 17 21 21 C 1.53003 * 109.47193 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.47219 * 65.00100 * 21 20 19 23 23 H 1.08998 * 109.47378 * 66.03147 * 1 2 3 24 24 H 1.09003 * 109.47260 * 186.03175 * 1 2 3 25 25 H 1.09001 * 109.47430 * 306.02860 * 1 2 3 26 26 H 0.97001 * 119.99928 * 180.02562 * 7 6 4 27 27 H 1.08003 * 120.00569 * 359.97438 * 14 13 12 28 28 H 1.07996 * 119.89614 * 179.97438 * 15 14 13 29 29 H 1.08003 * 119.89265 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.99987 * 180.29878 * 17 16 15 31 31 H 0.97004 * 119.99649 * 179.72519 * 19 18 17 32 32 H 1.08997 * 109.47342 * 60.00175 * 20 19 18 33 33 H 1.09001 * 109.47448 * 299.99832 * 20 19 18 34 34 H 1.09003 * 109.46927 * 185.00462 * 21 20 19 35 35 H 1.09002 * 109.47075 * 304.99672 * 21 20 19 36 36 H 0.96700 * 114.00027 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5458 4.4122 10 1 1.3432 -0.9493 5.1120 11 1 2.4861 -2.5662 3.7119 12 16 2.1346 -0.8550 -1.4812 13 6 3.8701 -0.5547 -1.4316 14 6 4.4030 0.2886 -0.4673 15 6 5.7651 0.5222 -0.4301 16 6 6.5998 -0.0818 -1.3521 17 6 6.0781 -0.9285 -2.3130 18 6 4.7127 -1.1643 -2.3617 19 7 4.1817 -2.0162 -3.3376 20 6 5.0683 -2.6553 -4.3130 21 6 4.2411 -3.5275 -5.2595 22 8 3.3671 -2.6992 -6.0289 23 1 -0.3634 0.4175 -0.9390 24 1 -0.3634 -1.0220 0.1080 25 1 -0.3634 0.6045 0.8311 26 1 0.7096 1.1617 3.4844 27 1 3.7538 0.7624 0.2542 28 1 6.1782 1.1792 0.3209 29 1 7.6631 0.1045 -1.3188 30 1 6.7337 -1.4023 -3.0286 31 1 3.2266 -2.1833 -3.3678 32 1 5.7967 -3.2753 -3.7904 33 1 5.5890 -1.8891 -4.8875 34 1 4.9080 -4.0718 -5.9281 35 1 3.6515 -4.2365 -4.6782 36 1 2.8107 -3.1865 -6.6519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154888439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:34 Heat of formation + Delta-G solvation = -51.807478 kcal Electronic energy + Delta-G solvation = -17928.632556 eV Core-core repulsion = 15116.602112 eV Total energy + Delta-G solvation = -2812.030444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17109 -38.15286 -36.27384 -35.77059 -32.41361 -31.86324 -31.19931 -28.33579 -27.33858 -24.40731 -23.72674 -22.74913 -21.90039 -18.73457 -18.50694 -18.35852 -17.45718 -17.23169 -16.68299 -15.94002 -15.50259 -15.13102 -15.00526 -14.90277 -14.69510 -14.41637 -13.97837 -13.49602 -13.41100 -13.34388 -12.88107 -12.74859 -12.39250 -12.33107 -12.18981 -12.13565 -11.56978 -11.28808 -11.02712 -10.90065 -10.82509 -10.50515 -10.29568 -8.72289 -8.21901 -7.71914 -6.33145 0.52925 0.77897 1.11115 1.38573 1.39767 1.49824 1.95192 2.39664 2.61304 3.01439 3.09871 3.39979 4.05784 4.10504 4.27126 4.32449 4.48015 4.58342 4.61582 4.72668 4.75385 4.84004 4.86200 4.89563 4.94303 5.17229 5.34244 5.37478 5.56989 5.60369 5.77036 5.81188 6.04214 6.05575 6.50928 6.68291 6.78484 6.91494 7.32920 8.85492 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.020874 B = 0.005909 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.040334 B = 4737.722378 C = 5430.261769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.095 3.905 3 H 0.021 0.979 4 C -0.520 4.520 5 H 0.050 0.950 6 C 0.028 3.972 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.274 1.274 12 S -0.198 6.198 13 C -0.156 4.156 14 C -0.090 4.090 15 C -0.179 4.179 16 C -0.077 4.077 17 C -0.193 4.193 18 C 0.216 3.784 19 N -0.743 5.743 20 C 0.120 3.880 21 C 0.067 3.933 22 O -0.594 6.594 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.266 0.734 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.398 0.602 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.516 -7.146 -13.176 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.033 4.033 3 H 0.039 0.961 4 C -0.559 4.559 5 H 0.068 0.932 6 C -0.173 4.173 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.198 1.198 12 S 0.046 5.954 13 C -0.273 4.273 14 C -0.114 4.114 15 C -0.201 4.201 16 C -0.098 4.098 17 C -0.217 4.217 18 C 0.107 3.893 19 N -0.374 5.374 20 C -0.004 4.004 21 C -0.011 4.011 22 O -0.403 6.403 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.233 0.767 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.089 -7.282 -13.651 17.944 hybrid contribution -0.079 0.074 1.759 1.762 sum 9.010 -7.207 -11.892 16.569 Atomic orbital electron populations 1.21470 0.94727 1.00682 1.00378 1.20826 0.96269 0.95428 0.90770 0.96074 1.21267 1.31771 1.12391 0.90436 0.93208 1.25619 0.94888 0.95521 1.01316 1.69971 1.36884 1.23570 1.24503 0.85611 0.78314 0.79003 0.79166 1.20022 1.20281 1.19836 1.84061 1.01103 1.73057 1.37214 1.21182 0.96242 1.06960 1.02877 1.21245 0.96871 0.96762 0.96558 1.21036 0.92403 1.04452 1.02187 1.21196 1.00437 0.94909 0.93238 1.20778 0.91828 1.05354 1.03779 1.17607 0.92463 0.90594 0.88668 1.44828 1.09780 1.50611 1.32225 1.21612 0.93008 0.96514 0.89222 1.22458 0.93091 0.92069 0.93483 1.86526 1.57276 1.38944 1.57548 0.94381 0.94475 0.90421 0.92459 0.87353 0.85439 0.82793 0.83283 0.76699 0.89390 0.91775 0.88996 0.92831 0.75251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.57 8.88 71.98 0.64 -4.93 16 2 C 0.10 4.95 2.01 29.85 0.06 5.01 16 3 H 0.02 1.21 7.00 -2.39 -0.02 1.19 16 4 C -0.52 -28.75 6.90 25.60 0.18 -28.57 16 5 H 0.05 2.86 7.71 -2.91 -0.02 2.84 16 6 C 0.03 1.53 5.30 84.65 0.45 1.97 16 7 N -0.91 -51.19 11.39 21.45 0.24 -50.94 16 8 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 S -0.20 -9.06 19.77 -56.49 -1.12 -10.18 16 13 C -0.16 -6.78 6.05 22.70 0.14 -6.64 16 14 C -0.09 -3.99 8.80 22.39 0.20 -3.80 16 15 C -0.18 -6.45 10.04 22.28 0.22 -6.23 16 16 C -0.08 -2.26 10.04 22.29 0.22 -2.04 16 17 C -0.19 -5.77 9.31 22.38 0.21 -5.56 16 18 C 0.22 7.80 6.66 38.24 0.25 8.05 16 19 N -0.74 -23.09 5.63 -338.84 -1.91 -25.00 16 20 C 0.12 2.54 5.30 86.38 0.46 3.00 16 21 C 0.07 1.08 7.18 71.98 0.52 1.60 16 22 O -0.59 -11.79 13.60 -148.98 -2.03 -13.82 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.08 4.11 6.26 -2.39 -0.01 4.10 16 26 H 0.27 14.19 8.31 -92.71 -0.77 13.41 16 27 H 0.11 5.51 5.09 -2.91 -0.01 5.50 16 28 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.15 3.35 6.74 -2.91 -0.02 3.33 16 31 H 0.40 13.44 7.02 -92.71 -0.65 12.79 16 32 H 0.09 1.53 7.94 -2.39 -0.02 1.52 16 33 H 0.06 1.35 7.96 -2.39 -0.02 1.33 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.40 4.02 9.12 -74.06 -0.68 3.35 16 Total: -1.00 -66.08 309.56 0.54 -65.54 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.23 Total: 26.72 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 3.54 Total: -38.12 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.66 Total: -75.94 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -2.03 Total: -13.82 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.12 Total: -10.18 kcal Total: -66.08 0.54 -65.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154888439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.732 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds