Wall clock time and date at job start Mon Mar 30 2020 00:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47052 * 2 1 4 4 C 1.50703 * 109.46958 * 239.99837 * 2 1 3 5 5 H 1.07995 * 119.99674 * 240.00146 * 4 2 1 6 6 C 1.37875 * 119.99944 * 60.00590 * 4 2 1 7 7 N 1.31513 * 120.00079 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99752 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47467 * 59.99985 * 8 6 4 10 10 H 1.48501 * 109.46996 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47091 * 299.99367 * 8 6 4 12 12 S 1.81398 * 109.46894 * 119.99827 * 2 1 3 13 13 C 1.76196 * 103.00079 * 289.52331 * 12 2 1 14 14 C 1.38729 * 120.10405 * 354.36010 * 13 12 2 15 15 C 1.38242 * 119.99416 * 180.32425 * 14 13 12 16 16 C 1.38270 * 120.19694 * 359.67540 * 15 14 13 17 17 C 1.38283 * 120.20436 * 359.97438 * 16 15 14 18 18 C 1.38645 * 120.00346 * 0.05011 * 17 16 15 19 19 N 1.40009 * 120.09567 * 179.97438 * 18 17 16 20 20 C 1.46499 * 120.00183 * 359.97438 * 19 18 17 21 21 C 1.52996 * 109.47207 * 179.97438 * 20 19 18 22 22 O 1.42909 * 109.46986 * 64.99858 * 21 20 19 23 23 H 1.08997 * 109.47050 * 293.73678 * 1 2 3 24 24 H 1.09000 * 109.46549 * 53.72955 * 1 2 3 25 25 H 1.08993 * 109.46981 * 173.73125 * 1 2 3 26 26 H 0.96997 * 120.00186 * 180.02562 * 7 6 4 27 27 H 1.08003 * 120.00130 * 0.02562 * 14 13 12 28 28 H 1.07998 * 119.90368 * 179.69685 * 15 14 13 29 29 H 1.08003 * 119.89594 * 180.02562 * 16 15 14 30 30 H 1.08005 * 120.00047 * 180.02562 * 17 16 15 31 31 H 0.96998 * 119.99500 * 179.97438 * 19 18 17 32 32 H 1.09003 * 109.47308 * 60.00121 * 20 19 18 33 33 H 1.09001 * 109.46881 * 299.99900 * 20 19 18 34 34 H 1.09001 * 109.47474 * 184.99690 * 21 20 19 35 35 H 1.09000 * 109.47137 * 305.00445 * 21 20 19 36 36 H 0.96697 * 113.99926 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0077 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 16 2.1346 -0.8551 1.4812 13 6 1.7258 0.2638 2.7794 14 6 1.1967 1.5112 2.4821 15 6 0.8830 2.3899 3.5022 16 6 1.0887 2.0270 4.8204 17 6 1.6090 0.7829 5.1265 18 6 1.9270 -0.1047 4.1100 19 7 2.4544 -1.3647 4.4176 20 6 2.6714 -1.7466 5.8152 21 6 3.2504 -3.1616 5.8732 22 8 4.5473 -3.1706 5.2730 23 1 -0.3633 0.4137 0.9407 24 1 -0.3632 0.6080 -0.8286 25 1 -0.3633 -1.0215 -0.1122 26 1 0.7083 1.1609 -3.4844 27 1 1.0343 1.7977 1.4535 28 1 0.4757 3.3625 3.2688 29 1 0.8415 2.7172 5.6136 30 1 1.7680 0.5027 6.1574 31 1 2.6760 -1.9847 3.7053 32 1 1.7223 -1.7206 6.3506 33 1 3.3691 -1.0489 6.2783 34 1 3.3290 -3.4798 6.9128 35 1 2.5952 -3.8447 5.3326 36 1 4.9755 -4.0376 5.2749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154888539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:38 Heat of formation + Delta-G solvation = -31.635553 kcal Electronic energy + Delta-G solvation = -17757.582912 eV Core-core repulsion = 14946.427189 eV Total energy + Delta-G solvation = -2811.155724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.95892 -37.30450 -34.95045 -34.02900 -30.98136 -30.47539 -29.71257 -27.23790 -25.29466 -23.31359 -22.08684 -21.29474 -20.75410 -17.84663 -17.56317 -16.32302 -16.09170 -15.84514 -15.05769 -14.75682 -14.15155 -13.94647 -13.72218 -13.39112 -13.29228 -13.04873 -12.49364 -12.35528 -11.82491 -11.60670 -11.37702 -11.08194 -10.96558 -10.91049 -10.53897 -10.36824 -10.26520 -9.90113 -9.78444 -9.35653 -8.95415 -8.81796 -8.44799 -7.38672 -6.23234 -6.16689 -4.25099 1.82122 2.06144 2.66820 3.26976 3.30583 3.34703 3.61594 3.87514 4.05178 4.30067 4.33964 4.85312 5.00090 5.13030 5.15404 5.31560 5.46583 5.54996 5.68977 5.74612 5.96005 6.13680 6.38422 6.60912 6.66026 6.80572 6.82201 6.86158 7.05953 7.25770 7.40435 7.41991 7.65401 7.68934 7.82254 8.05810 8.06813 8.73324 9.38365 10.89570 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.005500 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.998126 B = 5089.786664 C = 6296.050624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.101 3.899 3 H 0.050 0.950 4 C -0.510 4.510 5 H 0.065 0.935 6 C 0.071 3.929 7 N -0.887 5.887 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 S -0.182 6.182 13 C -0.132 4.132 14 C -0.088 4.088 15 C -0.162 4.162 16 C -0.094 4.094 17 C -0.192 4.192 18 C 0.223 3.777 19 N -0.740 5.740 20 C 0.129 3.871 21 C 0.064 3.936 22 O -0.566 6.566 23 H 0.019 0.981 24 H 0.089 0.911 25 H 0.040 0.960 26 H 0.266 0.734 27 H 0.133 0.867 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.407 0.593 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -3.702 15.830 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.068 0.932 4 C -0.549 4.549 5 H 0.084 0.916 6 C -0.133 4.133 7 N -0.524 5.524 8 Si 0.733 3.267 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.200 1.200 12 S 0.064 5.936 13 C -0.249 4.249 14 C -0.113 4.113 15 C -0.184 4.184 16 C -0.116 4.116 17 C -0.217 4.217 18 C 0.115 3.885 19 N -0.373 5.373 20 C 0.004 3.996 21 C -0.014 4.014 22 O -0.372 6.372 23 H 0.038 0.962 24 H 0.107 0.893 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.244 0.756 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 1.537 -4.133 15.760 16.365 hybrid contribution -0.179 0.015 -0.990 1.006 sum 1.357 -4.118 14.770 15.394 Atomic orbital electron populations 1.22078 0.96381 1.01326 0.99970 1.21032 0.95484 0.97275 0.88878 0.93229 1.20604 1.32492 1.13139 0.88710 0.91642 1.24883 0.94694 0.94956 0.98804 1.69871 1.35905 1.22546 1.24126 0.86424 0.79318 0.79645 0.81325 1.20019 1.21055 1.19966 1.84926 1.76320 1.30780 1.01619 1.21432 1.08786 0.99443 0.95258 1.21238 0.97655 0.92194 1.00218 1.20784 1.05209 0.99772 0.92594 1.20738 0.99147 0.95585 0.96132 1.20392 1.08941 0.95247 0.97118 1.17330 0.93980 0.85829 0.91405 1.44621 1.71062 1.15155 1.06449 1.21284 0.99191 0.94566 0.84562 1.22405 0.84847 0.97009 0.97128 1.86593 1.31280 1.36249 1.83047 0.96163 0.89265 0.94129 0.92456 0.84978 0.86755 0.86839 0.86711 0.75577 0.91293 0.91905 0.92364 0.92876 0.77391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.38 37.16 0.31 -3.04 16 2 C 0.10 2.56 1.97 -27.88 -0.06 2.50 16 3 H 0.05 1.35 6.83 -51.92 -0.35 0.99 16 4 C -0.51 -14.00 8.58 -34.44 -0.30 -14.29 16 5 H 0.07 1.81 7.71 -52.49 -0.40 1.40 16 6 C 0.07 1.92 5.30 -17.82 -0.09 1.82 16 7 N -0.89 -24.58 11.39 55.43 0.63 -23.95 16 8 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 S -0.18 -4.10 19.75 -107.50 -2.12 -6.22 16 13 C -0.13 -2.70 5.99 -38.92 -0.23 -2.94 16 14 C -0.09 -1.74 8.06 -39.40 -0.32 -2.06 16 15 C -0.16 -2.71 10.04 -39.57 -0.40 -3.11 16 16 C -0.09 -1.42 10.04 -39.55 -0.40 -1.81 16 17 C -0.19 -2.98 9.31 -39.41 -0.37 -3.35 16 18 C 0.22 3.97 6.66 -83.49 -0.56 3.42 16 19 N -0.74 -11.69 5.63 -58.45 -0.33 -12.02 16 20 C 0.13 1.50 5.30 -4.04 -0.02 1.47 16 21 C 0.06 0.60 7.18 37.16 0.27 0.87 16 22 O -0.57 -6.24 13.61 -35.23 -0.48 -6.72 16 23 H 0.02 0.44 6.16 -51.93 -0.32 0.12 16 24 H 0.09 2.31 6.26 -51.93 -0.33 1.99 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.13 2.80 4.99 -52.48 -0.26 2.54 16 28 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.11 1.47 6.74 -52.48 -0.35 1.11 16 31 H 0.41 6.91 7.02 -40.82 -0.29 6.62 16 32 H 0.07 0.69 7.95 -51.93 -0.41 0.27 16 33 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.38 2.35 9.12 45.56 0.42 2.76 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -30.37 307.63 -8.81 -39.18 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.97 Total: 9.60 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.16 Total: -20.51 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.30 Total: -35.96 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.48 Total: -6.72 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.12 Total: -6.22 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.37 -8.81 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154888539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.543 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds