Wall clock time and date at job start Mon Mar 30 2020 00:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47052 * 2 1 4 4 C 1.50703 * 109.46958 * 239.99837 * 2 1 3 5 5 H 1.07995 * 119.99674 * 240.00146 * 4 2 1 6 6 C 1.37875 * 119.99944 * 60.00590 * 4 2 1 7 7 N 1.31513 * 120.00079 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99752 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47467 * 59.99985 * 8 6 4 10 10 H 1.48501 * 109.46996 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47091 * 299.99367 * 8 6 4 12 12 S 1.81398 * 109.46894 * 119.99827 * 2 1 3 13 13 C 1.76196 * 103.00079 * 289.52331 * 12 2 1 14 14 C 1.38729 * 120.10405 * 354.36010 * 13 12 2 15 15 C 1.38242 * 119.99416 * 180.32425 * 14 13 12 16 16 C 1.38270 * 120.19694 * 359.67540 * 15 14 13 17 17 C 1.38283 * 120.20436 * 359.97438 * 16 15 14 18 18 C 1.38645 * 120.00346 * 0.05011 * 17 16 15 19 19 N 1.40009 * 120.09567 * 179.97438 * 18 17 16 20 20 C 1.46499 * 120.00183 * 359.97438 * 19 18 17 21 21 C 1.52996 * 109.47207 * 179.97438 * 20 19 18 22 22 O 1.42909 * 109.46986 * 64.99858 * 21 20 19 23 23 H 1.08997 * 109.47050 * 293.73678 * 1 2 3 24 24 H 1.09000 * 109.46549 * 53.72955 * 1 2 3 25 25 H 1.08993 * 109.46981 * 173.73125 * 1 2 3 26 26 H 0.96997 * 120.00186 * 180.02562 * 7 6 4 27 27 H 1.08003 * 120.00130 * 0.02562 * 14 13 12 28 28 H 1.07998 * 119.90368 * 179.69685 * 15 14 13 29 29 H 1.08003 * 119.89594 * 180.02562 * 16 15 14 30 30 H 1.08005 * 120.00047 * 180.02562 * 17 16 15 31 31 H 0.96998 * 119.99500 * 179.97438 * 19 18 17 32 32 H 1.09003 * 109.47308 * 60.00121 * 20 19 18 33 33 H 1.09001 * 109.46881 * 299.99900 * 20 19 18 34 34 H 1.09001 * 109.47474 * 184.99690 * 21 20 19 35 35 H 1.09000 * 109.47137 * 305.00445 * 21 20 19 36 36 H 0.96697 * 113.99926 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0077 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 16 2.1346 -0.8551 1.4812 13 6 1.7258 0.2638 2.7794 14 6 1.1967 1.5112 2.4821 15 6 0.8830 2.3899 3.5022 16 6 1.0887 2.0270 4.8204 17 6 1.6090 0.7829 5.1265 18 6 1.9270 -0.1047 4.1100 19 7 2.4544 -1.3647 4.4176 20 6 2.6714 -1.7466 5.8152 21 6 3.2504 -3.1616 5.8732 22 8 4.5473 -3.1706 5.2730 23 1 -0.3633 0.4137 0.9407 24 1 -0.3632 0.6080 -0.8286 25 1 -0.3633 -1.0215 -0.1122 26 1 0.7083 1.1609 -3.4844 27 1 1.0343 1.7977 1.4535 28 1 0.4757 3.3625 3.2688 29 1 0.8415 2.7172 5.6136 30 1 1.7680 0.5027 6.1574 31 1 2.6760 -1.9847 3.7053 32 1 1.7223 -1.7206 6.3506 33 1 3.3691 -1.0489 6.2783 34 1 3.3290 -3.4798 6.9128 35 1 2.5952 -3.8447 5.3326 36 1 4.9755 -4.0376 5.2749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154888539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:37 Heat of formation + Delta-G solvation = -52.174755 kcal Electronic energy + Delta-G solvation = -17758.473559 eV Core-core repulsion = 14946.427189 eV Total energy + Delta-G solvation = -2812.046370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22932 -38.17602 -36.31795 -35.80304 -32.75003 -31.75136 -31.14518 -28.35507 -27.37570 -24.41543 -23.59812 -22.94712 -22.02169 -19.19955 -18.51286 -18.05843 -17.50536 -17.25708 -16.65197 -15.99981 -15.52102 -15.27613 -15.02538 -14.87519 -14.55188 -14.36495 -13.96640 -13.77965 -13.49584 -13.15607 -12.92407 -12.85430 -12.49568 -12.37960 -12.20099 -12.14340 -11.57589 -11.34265 -11.05053 -10.92606 -10.77388 -10.50414 -10.36508 -8.76438 -8.24338 -7.80361 -6.40773 0.45543 0.72910 1.00541 1.41041 1.42775 1.51491 1.97020 2.37855 2.59087 2.95672 3.05155 3.39289 3.99963 4.07075 4.23383 4.30064 4.46284 4.56534 4.59015 4.62750 4.72359 4.82547 4.83391 4.85195 4.91424 5.05780 5.30833 5.33175 5.51208 5.57125 5.71741 5.74913 5.99359 6.01168 6.47862 6.61082 6.74704 6.90185 7.26212 8.81785 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.005500 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.998126 B = 5089.786664 C = 6296.050624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.101 3.899 3 H 0.020 0.980 4 C -0.535 4.535 5 H 0.057 0.943 6 C 0.026 3.974 7 N -0.910 5.910 8 Si 0.970 3.030 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.271 1.271 12 S -0.193 6.193 13 C -0.167 4.167 14 C -0.107 4.107 15 C -0.170 4.170 16 C -0.077 4.077 17 C -0.189 4.189 18 C 0.217 3.783 19 N -0.744 5.744 20 C 0.120 3.880 21 C 0.065 3.935 22 O -0.596 6.596 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.269 0.731 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.398 0.602 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 -3.978 18.256 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.027 4.027 3 H 0.038 0.962 4 C -0.574 4.574 5 H 0.075 0.925 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.794 3.206 9 H -0.194 1.194 10 H -0.201 1.201 11 H -0.196 1.196 12 S 0.051 5.949 13 C -0.284 4.284 14 C -0.132 4.132 15 C -0.192 4.192 16 C -0.097 4.097 17 C -0.213 4.213 18 C 0.108 3.892 19 N -0.375 5.375 20 C -0.004 4.004 21 C -0.012 4.012 22 O -0.404 6.404 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.153 0.847 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.233 0.767 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.581 -4.418 18.232 18.826 hybrid contribution -0.177 0.146 -1.552 1.569 sum 1.404 -4.272 16.680 17.275 Atomic orbital electron populations 1.21850 0.95886 1.00340 0.99782 1.20757 0.95828 0.95832 0.90283 0.96217 1.20870 1.33037 1.13316 0.90161 0.92488 1.25705 0.94662 0.95580 1.01594 1.69985 1.36416 1.23477 1.24901 0.85433 0.78772 0.78685 0.77747 1.19398 1.20094 1.19619 1.84637 1.77247 1.31557 1.01444 1.21431 1.11995 0.99531 0.95416 1.21164 0.99071 0.93051 0.99887 1.21054 1.05189 1.00101 0.92836 1.21238 0.96431 0.95839 0.96240 1.20833 1.07578 0.94777 0.98111 1.17603 0.93707 0.87099 0.90795 1.44885 1.70285 1.14222 1.08088 1.21631 1.00536 0.95959 0.82235 1.22484 0.84128 0.95621 0.99008 1.86534 1.32150 1.38192 1.83553 0.94829 0.91270 0.94810 0.92209 0.87764 0.84715 0.82523 0.83213 0.76737 0.89038 0.91791 0.88933 0.92810 0.75269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.38 71.98 0.60 -5.45 16 2 C 0.10 5.40 1.97 29.85 0.06 5.46 16 3 H 0.02 1.16 6.83 -2.39 -0.02 1.14 16 4 C -0.53 -30.49 8.58 25.60 0.22 -30.27 16 5 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 6 C 0.03 1.46 5.30 84.65 0.45 1.91 16 7 N -0.91 -51.89 11.39 21.45 0.24 -51.64 16 8 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 S -0.19 -9.04 19.75 -56.49 -1.12 -10.16 16 13 C -0.17 -6.92 5.99 22.70 0.14 -6.78 16 14 C -0.11 -4.33 8.06 22.39 0.18 -4.15 16 15 C -0.17 -5.42 10.04 22.28 0.22 -5.20 16 16 C -0.08 -2.01 10.04 22.29 0.22 -1.78 16 17 C -0.19 -5.19 9.31 22.38 0.21 -4.99 16 18 C 0.22 7.47 6.66 38.24 0.25 7.73 16 19 N -0.74 -22.56 5.63 -338.83 -1.91 -24.47 16 20 C 0.12 2.44 5.30 86.38 0.46 2.90 16 21 C 0.07 1.05 7.18 71.98 0.52 1.57 16 22 O -0.60 -12.16 13.61 -148.98 -2.03 -14.19 16 23 H 0.03 1.56 6.16 -2.39 -0.01 1.54 16 24 H 0.07 3.76 6.26 -2.39 -0.01 3.75 16 25 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.10 4.71 4.99 -2.91 -0.01 4.70 16 28 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.15 3.06 6.74 -2.91 -0.02 3.04 16 31 H 0.40 13.44 7.02 -92.71 -0.65 12.79 16 32 H 0.09 1.46 7.95 -2.39 -0.02 1.44 16 33 H 0.06 1.31 7.95 -2.39 -0.02 1.29 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.40 4.32 9.12 -74.06 -0.68 3.65 16 Total: -1.00 -67.95 307.63 0.53 -67.42 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.22 Total: 26.41 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 3.53 Total: -39.06 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -1.66 Total: -76.11 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -2.03 Total: -14.19 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.12 Total: -10.16 kcal Total: -67.95 0.53 -67.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154888539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.244 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds