Wall clock time and date at job start Mon Mar 30 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46698 * 2 1 4 4 C 1.50704 * 109.46896 * 239.99809 * 2 1 3 5 5 O 1.21276 * 119.99790 * 250.78523 * 4 2 1 6 6 N 1.34772 * 119.99817 * 71.06824 * 4 2 1 7 7 C 1.46504 * 120.00004 * 183.87505 * 6 4 2 8 8 C 1.46505 * 120.00289 * 3.86928 * 6 4 2 9 9 H 1.09000 * 109.46703 * 354.37864 * 8 6 4 10 10 C 1.52999 * 109.46646 * 114.37459 * 8 6 4 11 11 C 1.50691 * 109.47390 * 234.37503 * 8 6 4 12 12 H 1.08008 * 120.00054 * 0.02562 * 11 8 6 13 13 C 1.37876 * 120.00146 * 179.97438 * 11 8 6 14 14 N 1.31515 * 120.00134 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00227 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47396 * 89.99963 * 15 13 11 17 17 H 1.48502 * 109.47347 * 210.00417 * 15 13 11 18 18 H 1.48504 * 109.47248 * 330.00304 * 15 13 11 19 19 C 1.50701 * 109.47178 * 120.00029 * 2 1 3 20 20 C 1.33391 * 125.19964 * 239.72362 * 19 2 1 21 21 C 1.38424 * 114.91610 * 179.86105 * 20 19 2 22 22 C 1.33385 * 114.92188 * 0.42434 * 21 20 19 23 23 S 1.75879 * 125.20418 * 60.02235 * 19 2 1 24 24 H 1.09001 * 109.47047 * 178.00127 * 1 2 3 25 25 H 1.09000 * 109.47129 * 298.00295 * 1 2 3 26 26 H 1.09001 * 109.47282 * 58.00301 * 1 2 3 27 27 H 1.09001 * 109.47144 * 95.10622 * 7 6 4 28 28 H 1.08998 * 109.47104 * 215.10812 * 7 6 4 29 29 H 1.09002 * 109.46771 * 335.10363 * 7 6 4 30 30 H 1.08998 * 109.47711 * 60.00505 * 10 8 6 31 31 H 1.09011 * 109.46877 * 180.02562 * 10 8 6 32 32 H 1.08997 * 109.47472 * 300.00041 * 10 8 6 33 33 H 0.96993 * 120.00443 * 179.97438 * 14 13 11 34 34 H 1.07997 * 122.54253 * 0.02562 * 20 19 2 35 35 H 1.07999 * 122.53928 * 180.20181 * 21 20 19 36 36 H 1.08008 * 125.20548 * 179.75663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.5603 -1.7976 -1.1299 6 7 1.8999 -0.1351 -2.4420 7 6 2.3104 -0.8611 -3.6465 8 6 1.3452 1.2162 -2.5546 9 1 1.0076 1.5531 -1.5745 10 6 2.4231 2.1678 -3.0777 11 6 0.1801 1.2030 -3.5101 12 1 -0.1179 0.2802 -3.9857 13 6 -0.5063 2.3688 -3.7765 14 7 -0.1438 3.4923 -3.1970 15 14 -1.9511 2.3523 -4.9604 16 1 -3.2030 2.0794 -4.2098 17 1 -2.0549 3.6721 -5.6331 18 1 -1.7439 1.2922 -5.9795 19 6 2.0324 -0.7104 1.2305 20 6 2.8068 -0.1661 2.1703 21 6 3.1409 -1.0128 3.2131 22 6 2.6451 -2.2473 3.1157 23 16 1.6933 -2.3861 1.6432 24 1 -0.3633 -1.0271 -0.0358 25 1 -0.3633 0.4825 0.9073 26 1 -0.3634 0.5445 -0.8715 27 1 1.4457 -1.3631 -4.0806 28 1 2.7243 -0.1592 -4.3704 29 1 3.0666 -1.6011 -3.3846 30 1 2.7608 1.8309 -4.0578 31 1 2.0106 3.1734 -3.1610 32 1 3.2659 2.1773 -2.3866 33 1 -0.6264 4.3125 -3.3846 34 1 3.1452 0.8584 2.1226 35 1 3.7592 -0.6988 4.0411 36 1 2.8040 -3.0404 3.8314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158887731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:34 Heat of formation + Delta-G solvation = -3.697396 kcal Electronic energy + Delta-G solvation = -18652.729315 eV Core-core repulsion = 15842.785080 eV Total energy + Delta-G solvation = -2809.944234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.49435 -37.41664 -35.58124 -33.44152 -32.67493 -29.20958 -28.39655 -26.40660 -25.36516 -24.23528 -22.51860 -21.22881 -19.09698 -18.55003 -16.87081 -16.45333 -16.00697 -15.25899 -14.92368 -14.65057 -14.28934 -13.45705 -13.19115 -12.79629 -12.72869 -12.41858 -12.32138 -11.92757 -11.67870 -11.63686 -11.37398 -11.24111 -11.07635 -11.03546 -10.85700 -10.69605 -10.30377 -10.29120 -10.17545 -9.40136 -9.01351 -8.58227 -8.33950 -8.03148 -7.64382 -6.22076 -4.30487 1.30148 1.98532 2.39451 2.99952 3.19447 3.27263 3.28996 3.35511 3.97841 4.29261 4.95781 5.09715 5.23733 5.26647 5.54114 5.63770 5.77372 5.81598 6.10033 6.18020 6.24527 6.29390 6.38505 6.44608 6.54181 6.56287 6.71204 6.72160 6.75722 6.93752 7.15111 7.37128 7.62650 7.80697 8.06813 8.42401 8.71489 8.96746 9.38178 10.82690 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.029254 B = 0.005481 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.914583 B = 5107.292092 C = 5261.274790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 H 0.110 0.890 4 C 0.512 3.488 5 O -0.564 6.564 6 N -0.589 5.589 7 C 0.097 3.903 8 C 0.248 3.752 9 H 0.059 0.941 10 C -0.153 4.153 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.887 5.887 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.140 4.140 20 C -0.154 4.154 21 C -0.134 4.134 22 C -0.241 4.241 23 S 0.144 5.856 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.095 0.905 32 H 0.012 0.988 33 H 0.265 0.735 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 -5.142 8.205 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 H 0.128 0.872 4 C 0.298 3.702 5 O -0.444 6.444 6 N -0.319 5.319 7 C -0.046 4.046 8 C 0.148 3.852 9 H 0.077 0.923 10 C -0.211 4.211 11 C -0.566 4.566 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.258 4.258 20 C -0.184 4.184 21 C -0.165 4.165 22 C -0.377 4.377 23 S 0.409 5.591 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.113 0.887 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.404 -6.671 7.556 10.362 hybrid contribution 0.099 1.375 -0.049 1.380 sum 2.503 -5.296 7.507 9.522 Atomic orbital electron populations 1.21939 0.91321 1.02716 1.04440 1.19812 0.98149 0.99669 0.88653 0.87196 1.20263 0.79177 0.85851 0.84894 1.90619 1.45417 1.21899 1.86501 1.48185 1.60515 1.18415 1.04757 1.21357 0.99323 0.96439 0.87522 1.19198 0.91545 0.75873 0.98628 0.92332 1.22147 0.96776 1.03982 0.98221 1.21293 1.13411 0.95067 1.26860 0.91931 1.24875 0.97413 0.95243 0.95989 1.69849 1.40414 0.99346 1.42925 0.86500 0.82469 0.77478 0.81057 1.20515 1.21103 1.19851 1.24161 1.04171 0.97332 1.00129 1.20052 1.01546 1.01599 0.95187 1.20005 1.03076 0.93237 1.00211 1.25667 1.07738 1.01410 1.02869 1.84271 1.49632 1.10196 1.15032 0.92748 0.91834 0.88442 0.93430 0.91624 0.92050 0.94803 0.88651 0.96914 0.92520 0.84627 0.84963 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.74 37.16 0.32 -2.22 16 2 C -0.04 -0.72 2.23 -92.92 -0.21 -0.93 16 3 H 0.11 1.95 7.04 -51.93 -0.37 1.59 16 4 C 0.51 10.63 6.92 -10.99 -0.08 10.56 16 5 O -0.56 -12.65 14.53 5.56 0.08 -12.57 16 6 N -0.59 -12.45 2.75 -175.26 -0.48 -12.93 16 7 C 0.10 1.88 9.62 59.85 0.58 2.45 16 8 C 0.25 5.59 1.77 -69.08 -0.12 5.47 16 9 H 0.06 1.35 4.45 -51.93 -0.23 1.12 16 10 C -0.15 -3.38 9.03 37.16 0.34 -3.04 16 11 C -0.53 -12.98 8.03 -34.44 -0.28 -13.26 16 12 H 0.06 1.57 7.20 -52.48 -0.38 1.19 16 13 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 14 N -0.89 -22.73 11.32 55.43 0.63 -22.10 16 15 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C -0.14 -2.37 4.72 -36.00 -0.17 -2.54 16 20 C -0.15 -2.33 10.01 -41.21 -0.41 -2.74 16 21 C -0.13 -1.80 10.18 -41.21 -0.42 -2.22 16 22 C -0.24 -3.24 11.23 29.04 0.33 -2.91 16 23 S 0.14 2.28 21.97 -107.50 -2.36 -0.08 16 24 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.10 1.91 5.93 -51.93 -0.31 1.61 16 27 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 28 H 0.07 1.22 6.74 -51.93 -0.35 0.87 16 29 H 0.06 1.15 7.23 -51.93 -0.38 0.78 16 30 H 0.03 0.72 6.90 -51.93 -0.36 0.37 16 31 H 0.10 2.29 6.07 -51.92 -0.32 1.98 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -27.18 305.44 -7.53 -34.71 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.75 Total: 3.41 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.22 Total: -9.79 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.14 Total: -35.03 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.36 Total: -0.08 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.18 -7.53 -34.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158887731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.010 kcal (2) G-P(sol) polarization free energy of solvation -27.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds