Wall clock time and date at job start Mon Mar 30 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46698 * 2 1 4 4 C 1.50704 * 109.46896 * 239.99809 * 2 1 3 5 5 O 1.21276 * 119.99790 * 250.78523 * 4 2 1 6 6 N 1.34772 * 119.99817 * 71.06824 * 4 2 1 7 7 C 1.46504 * 120.00004 * 183.87505 * 6 4 2 8 8 C 1.46505 * 120.00289 * 3.86928 * 6 4 2 9 9 H 1.09000 * 109.46703 * 354.37864 * 8 6 4 10 10 C 1.52999 * 109.46646 * 114.37459 * 8 6 4 11 11 C 1.50691 * 109.47390 * 234.37503 * 8 6 4 12 12 H 1.08008 * 120.00054 * 0.02562 * 11 8 6 13 13 C 1.37876 * 120.00146 * 179.97438 * 11 8 6 14 14 N 1.31515 * 120.00134 * 0.02562 * 13 11 8 15 15 Si 1.86794 * 120.00227 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47396 * 89.99963 * 15 13 11 17 17 H 1.48502 * 109.47347 * 210.00417 * 15 13 11 18 18 H 1.48504 * 109.47248 * 330.00304 * 15 13 11 19 19 C 1.50701 * 109.47178 * 120.00029 * 2 1 3 20 20 C 1.33391 * 125.19964 * 239.72362 * 19 2 1 21 21 C 1.38424 * 114.91610 * 179.86105 * 20 19 2 22 22 C 1.33385 * 114.92188 * 0.42434 * 21 20 19 23 23 S 1.75879 * 125.20418 * 60.02235 * 19 2 1 24 24 H 1.09001 * 109.47047 * 178.00127 * 1 2 3 25 25 H 1.09000 * 109.47129 * 298.00295 * 1 2 3 26 26 H 1.09001 * 109.47282 * 58.00301 * 1 2 3 27 27 H 1.09001 * 109.47144 * 95.10622 * 7 6 4 28 28 H 1.08998 * 109.47104 * 215.10812 * 7 6 4 29 29 H 1.09002 * 109.46771 * 335.10363 * 7 6 4 30 30 H 1.08998 * 109.47711 * 60.00505 * 10 8 6 31 31 H 1.09011 * 109.46877 * 180.02562 * 10 8 6 32 32 H 1.08997 * 109.47472 * 300.00041 * 10 8 6 33 33 H 0.96993 * 120.00443 * 179.97438 * 14 13 11 34 34 H 1.07997 * 122.54253 * 0.02562 * 20 19 2 35 35 H 1.07999 * 122.53928 * 180.20181 * 21 20 19 36 36 H 1.08008 * 125.20548 * 179.75663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.5603 -1.7976 -1.1299 6 7 1.8999 -0.1351 -2.4420 7 6 2.3104 -0.8611 -3.6465 8 6 1.3452 1.2162 -2.5546 9 1 1.0076 1.5531 -1.5745 10 6 2.4231 2.1678 -3.0777 11 6 0.1801 1.2030 -3.5101 12 1 -0.1179 0.2802 -3.9857 13 6 -0.5063 2.3688 -3.7765 14 7 -0.1438 3.4923 -3.1970 15 14 -1.9511 2.3523 -4.9604 16 1 -3.2030 2.0794 -4.2098 17 1 -2.0549 3.6721 -5.6331 18 1 -1.7439 1.2922 -5.9795 19 6 2.0324 -0.7104 1.2305 20 6 2.8068 -0.1661 2.1703 21 6 3.1409 -1.0128 3.2131 22 6 2.6451 -2.2473 3.1157 23 16 1.6933 -2.3861 1.6432 24 1 -0.3633 -1.0271 -0.0358 25 1 -0.3633 0.4825 0.9073 26 1 -0.3634 0.5445 -0.8715 27 1 1.4457 -1.3631 -4.0806 28 1 2.7243 -0.1592 -4.3704 29 1 3.0666 -1.6011 -3.3846 30 1 2.7608 1.8309 -4.0578 31 1 2.0106 3.1734 -3.1610 32 1 3.2659 2.1773 -2.3866 33 1 -0.6264 4.3125 -3.3846 34 1 3.1452 0.8584 2.1226 35 1 3.7592 -0.6988 4.0411 36 1 2.8040 -3.0404 3.8314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158887731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:34 Heat of formation + Delta-G solvation = -17.192027 kcal Electronic energy + Delta-G solvation = -18653.314486 eV Core-core repulsion = 15842.785080 eV Total energy + Delta-G solvation = -2810.529405 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09098 -38.60376 -37.32207 -34.82127 -34.52657 -31.00345 -29.60888 -27.98111 -27.25322 -25.52761 -23.90577 -22.89778 -20.25733 -20.09677 -18.56084 -18.01120 -17.55698 -16.78244 -16.35412 -16.22059 -15.92557 -14.92056 -14.76472 -14.50322 -14.11622 -13.71487 -13.53485 -13.40145 -13.28680 -13.07283 -12.94407 -12.85969 -12.75412 -12.53741 -12.49584 -12.28465 -12.12445 -11.94143 -11.48004 -11.20368 -10.67348 -10.46890 -9.51789 -9.36130 -9.22825 -8.12668 -6.25980 0.15340 0.82556 1.26132 1.44001 1.47829 1.54906 1.71382 1.88962 2.35524 2.50803 3.16696 3.63290 3.73068 4.14052 4.24296 4.30568 4.52869 4.67061 4.69439 4.71600 4.75511 4.84709 4.88406 4.94683 4.97607 5.05856 5.23813 5.29083 5.39081 5.45884 5.58845 5.66297 5.76850 5.95803 6.21861 6.67509 6.84527 7.28919 7.46745 8.90836 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.029254 B = 0.005481 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.914583 B = 5107.292092 C = 5261.274790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 H 0.110 0.890 4 C 0.506 3.494 5 O -0.582 6.582 6 N -0.595 5.595 7 C 0.097 3.903 8 C 0.254 3.746 9 H 0.054 0.946 10 C -0.143 4.143 11 C -0.536 4.536 12 H 0.052 0.948 13 C 0.031 3.969 14 N -0.907 5.907 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.171 4.171 20 C -0.147 4.147 21 C -0.140 4.140 22 C -0.223 4.223 23 S 0.101 5.899 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.025 0.975 33 H 0.266 0.734 34 H 0.150 0.850 35 H 0.166 0.834 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -5.285 9.434 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.056 4.056 3 H 0.128 0.872 4 C 0.294 3.706 5 O -0.464 6.464 6 N -0.325 5.325 7 C -0.046 4.046 8 C 0.153 3.847 9 H 0.072 0.928 10 C -0.202 4.202 11 C -0.575 4.575 12 H 0.071 0.929 13 C -0.170 4.170 14 N -0.545 5.545 15 Si 0.776 3.224 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.289 4.289 20 C -0.178 4.178 21 C -0.170 4.170 22 C -0.359 4.359 23 S 0.366 5.634 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.837 -6.817 8.783 11.474 hybrid contribution 0.018 1.384 -0.368 1.432 sum 2.855 -5.433 8.415 10.415 Atomic orbital electron populations 1.21820 0.91122 1.02323 1.04140 1.19707 0.98245 0.99457 0.88207 0.87184 1.20759 0.78645 0.85724 0.85452 1.90597 1.46213 1.22709 1.86851 1.48236 1.60578 1.18122 1.05546 1.21402 0.99389 0.96583 0.87231 1.19027 0.91175 0.76631 0.97901 0.92835 1.22005 0.96935 1.02686 0.98583 1.21436 1.14212 0.94688 1.27121 0.92936 1.25434 0.99267 0.95049 0.97204 1.69931 1.41190 0.99637 1.43755 0.85686 0.80057 0.77283 0.79374 1.20387 1.20896 1.19907 1.24080 1.06428 0.97828 1.00531 1.20417 1.00006 1.02507 0.94865 1.20344 1.03235 0.92829 1.00588 1.26037 1.05904 1.02338 1.01613 1.84375 1.51207 1.10436 1.17404 0.92970 0.89856 0.90993 0.93576 0.90979 0.91583 0.94754 0.90490 0.95569 0.92481 0.83225 0.81649 0.79435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.74 71.98 0.63 -4.11 16 2 C -0.03 -1.20 2.23 -12.28 -0.03 -1.23 16 3 H 0.11 3.88 7.04 -2.39 -0.02 3.86 16 4 C 0.51 21.04 6.92 87.66 0.61 21.64 16 5 O -0.58 -26.11 14.53 -3.02 -0.04 -26.15 16 6 N -0.60 -25.15 2.75 -826.79 -2.28 -27.43 16 7 C 0.10 3.74 9.62 127.77 1.23 4.97 16 8 C 0.25 11.45 1.77 44.24 0.08 11.53 16 9 H 0.05 2.49 4.45 -2.39 -0.01 2.48 16 10 C -0.14 -6.30 9.03 71.98 0.65 -5.65 16 11 C -0.54 -26.43 8.03 25.60 0.21 -26.22 16 12 H 0.05 2.65 7.20 -2.91 -0.02 2.63 16 13 C 0.03 1.56 5.30 84.65 0.45 2.00 16 14 N -0.91 -46.36 11.32 21.45 0.24 -46.11 16 15 Si 0.95 40.34 29.54 68.60 2.03 42.36 16 16 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 19 C -0.17 -5.61 4.72 24.59 0.12 -5.49 16 20 C -0.15 -4.12 10.01 21.22 0.21 -3.91 16 21 C -0.14 -3.28 10.18 21.22 0.22 -3.07 16 22 C -0.22 -5.34 11.23 66.72 0.75 -4.59 16 23 S 0.10 3.12 21.97 -56.49 -1.24 1.88 16 24 H 0.05 1.79 8.07 -2.39 -0.02 1.78 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.07 2.87 5.93 -2.39 -0.01 2.85 16 27 H 0.05 1.76 7.81 -2.39 -0.02 1.75 16 28 H 0.07 2.64 6.74 -2.39 -0.02 2.63 16 29 H 0.07 2.46 7.23 -2.39 -0.02 2.44 16 30 H 0.03 1.45 6.90 -2.39 -0.02 1.44 16 31 H 0.08 3.69 6.07 -2.38 -0.01 3.68 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 34 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 35 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -56.62 305.44 4.90 -51.73 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.08 Total: 17.86 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.11 Total: -14.12 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -2.03 Total: -73.54 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.04 Total: -26.15 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.24 Total: 1.88 kcal Total: -56.62 4.90 -51.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158887731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.533 kcal (2) G-P(sol) polarization free energy of solvation -56.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds