Wall clock time and date at job start Mon Mar 30 2020 00:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47467 * 2 1 4 4 C 1.50697 * 109.47461 * 239.99407 * 2 1 3 5 5 H 1.07994 * 120.00154 * 240.00188 * 4 2 1 6 6 C 1.37875 * 119.99536 * 60.00169 * 4 2 1 7 7 N 1.31517 * 120.00335 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46904 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46917 * 120.00197 * 8 6 4 11 11 H 1.48492 * 109.47359 * 240.00205 * 8 6 4 12 12 N 1.46505 * 109.46950 * 119.99446 * 2 1 3 13 13 C 1.46502 * 119.99932 * 60.00371 * 12 2 1 14 14 C 1.34773 * 120.00098 * 240.00048 * 12 2 1 15 15 O 1.21276 * 120.00070 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99836 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.47619 * 60.00005 * 16 14 12 18 18 C 1.53004 * 109.47412 * 299.99852 * 16 14 12 19 19 C 1.50703 * 109.47140 * 180.02562 * 16 14 12 20 20 C 1.33394 * 125.20083 * 240.00306 * 19 16 14 21 21 C 1.38427 * 114.91995 * 180.02562 * 20 19 16 22 22 C 1.33386 * 114.91794 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20446 * 60.01893 * 19 16 14 24 24 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47410 * 299.99969 * 1 2 3 26 26 H 1.09006 * 109.47147 * 60.00537 * 1 2 3 27 27 H 0.97000 * 119.99828 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47368 * 269.99930 * 13 12 2 29 29 H 1.09006 * 109.47431 * 29.99459 * 13 12 2 30 30 H 1.08995 * 109.47005 * 149.99759 * 13 12 2 31 31 H 1.08997 * 109.46854 * 300.00622 * 18 16 14 32 32 H 1.08998 * 109.46629 * 60.00012 * 18 16 14 33 33 H 1.08992 * 109.47371 * 180.02562 * 18 16 14 34 34 H 1.08000 * 122.53490 * 359.74253 * 20 19 16 35 35 H 1.07999 * 122.53667 * 179.97438 * 21 20 19 36 36 H 1.08002 * 125.19644 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1475 -2.2865 -3.6035 10 1 1.1679 -1.5868 -4.8164 11 1 3.1474 -0.1861 -4.8159 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0857 1.1257 1.8917 16 6 3.2958 -0.7460 3.3136 17 1 3.9015 -1.6022 3.0168 18 6 2.1061 -1.2273 4.1467 19 6 4.1324 0.2015 4.1343 20 6 5.4161 0.0194 4.4479 21 6 5.9779 1.0263 5.2140 22 6 5.1505 2.0262 5.5219 23 16 3.5655 1.7162 4.8254 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 0.7088 1.1610 -3.4844 28 1 0.7375 -2.1443 1.9995 29 1 1.5294 -2.5969 0.4710 30 1 2.4628 -2.5817 1.9866 31 1 1.5004 -0.3712 4.4435 32 1 1.5006 -1.9125 3.5533 33 1 2.4697 -1.7408 5.0366 34 1 5.9735 -0.8501 4.1321 35 1 7.0080 1.0038 5.5377 36 1 5.4138 2.8935 6.1092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158888079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:44 Heat of formation + Delta-G solvation = 1.499358 kcal Electronic energy + Delta-G solvation = -18462.919505 eV Core-core repulsion = 15653.200619 eV Total energy + Delta-G solvation = -2809.718886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50699 -37.48977 -35.33286 -33.95872 -32.50847 -29.44011 -28.18859 -26.31767 -25.22314 -24.47291 -23.07028 -20.89003 -19.19306 -18.51454 -16.80950 -16.43060 -16.17868 -15.29233 -15.22336 -14.57432 -14.25457 -13.70954 -13.11163 -12.88986 -12.57497 -12.52744 -12.40298 -12.07660 -12.00407 -11.61618 -11.59917 -11.30668 -11.12018 -10.96804 -10.81688 -10.65011 -10.39120 -10.23920 -10.17474 -9.18988 -8.95769 -8.45580 -8.39163 -8.11658 -7.58153 -6.07598 -4.15582 1.21786 1.90119 2.29953 2.92082 3.25467 3.33067 3.35336 3.39391 3.97296 4.39734 4.73438 5.05144 5.19408 5.22873 5.23994 5.37615 5.60263 5.69665 5.77249 5.79174 5.85464 6.01220 6.12754 6.27574 6.39396 6.47690 6.65983 6.75762 6.83480 7.06664 7.42235 7.53950 7.71627 8.01820 8.19913 8.52420 8.83100 9.05153 9.51005 10.97732 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.005064 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.935305 B = 5528.296725 C = 5663.493425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.590 5.590 13 C 0.080 3.920 14 C 0.505 3.495 15 O -0.539 6.539 16 C -0.045 4.045 17 H 0.107 0.893 18 C -0.153 4.153 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.135 4.135 22 C -0.234 4.234 23 S 0.141 5.859 24 H 0.029 0.971 25 H 0.010 0.990 26 H 0.093 0.907 27 H 0.263 0.737 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -4.443 14.944 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.063 4.063 14 C 0.290 3.710 15 O -0.417 6.417 16 C -0.069 4.069 17 H 0.125 0.875 18 C -0.211 4.211 19 C -0.260 4.260 20 C -0.180 4.180 21 C -0.166 4.166 22 C -0.370 4.370 23 S 0.406 5.594 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.503 -2.912 14.677 15.171 hybrid contribution 1.771 -1.268 -0.966 2.383 sum 4.274 -4.180 13.711 14.958 Atomic orbital electron populations 1.22074 0.98177 0.99360 1.00776 1.18947 0.90859 0.94555 0.79877 0.91898 1.21351 1.31731 1.12992 0.90304 0.92214 1.24896 0.94944 0.94981 0.98973 1.69892 1.36388 1.22628 1.23639 0.86444 0.78592 0.79583 0.82794 1.19826 1.20936 1.20918 1.48174 1.48934 1.11529 1.23473 1.21765 0.98720 0.83520 1.02332 1.20175 0.79461 0.87283 0.84056 1.90683 1.57881 1.16811 1.76306 1.19881 0.96885 0.96793 0.93315 0.87492 1.22087 0.96779 1.02264 0.99950 1.24011 0.98011 0.99369 1.04571 1.20017 0.93893 1.01481 1.02628 1.20011 1.00743 0.94463 1.01394 1.25649 0.98162 1.04349 1.08861 1.84293 1.11487 1.17322 1.46292 0.95182 0.97048 0.88866 0.92741 0.93504 0.90121 0.92638 0.92163 0.90044 0.91610 0.84731 0.84855 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.15 0.33 -3.14 16 2 C 0.26 6.58 2.64 -69.08 -0.18 6.40 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.15 7.99 -34.44 -0.28 -14.42 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.55 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.59 -12.46 2.75 -175.26 -0.48 -12.94 16 13 C 0.08 1.31 7.80 59.85 0.47 1.77 16 14 C 0.51 10.48 7.05 -10.99 -0.08 10.40 16 15 O -0.54 -13.37 14.58 5.56 0.08 -13.29 16 16 C -0.05 -0.70 2.30 -92.92 -0.21 -0.92 16 17 H 0.11 1.46 7.35 -51.93 -0.38 1.07 16 18 C -0.15 -1.92 8.75 37.16 0.33 -1.60 16 19 C -0.14 -2.21 4.60 -36.00 -0.17 -2.38 16 20 C -0.15 -2.10 10.02 -41.20 -0.41 -2.52 16 21 C -0.13 -1.73 10.18 -41.21 -0.42 -2.15 16 22 C -0.23 -3.05 11.23 29.04 0.33 -2.73 16 23 S 0.14 2.16 22.18 -107.50 -2.38 -0.22 16 24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 29 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 30 H 0.05 0.73 6.01 -51.93 -0.31 0.42 16 31 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16 32 H 0.08 0.95 4.53 -51.93 -0.24 0.71 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -31.39 305.08 -7.75 -39.13 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.77 Total: 0.87 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -0.39 Total: -9.61 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.14 Total: -37.49 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.38 Total: -0.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.39 -7.75 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158888079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.634 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds