Wall clock time and date at job start Mon Mar 30 2020 00:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47467 * 2 1 4 4 C 1.50697 * 109.47461 * 239.99407 * 2 1 3 5 5 H 1.07994 * 120.00154 * 240.00188 * 4 2 1 6 6 C 1.37875 * 119.99536 * 60.00169 * 4 2 1 7 7 N 1.31517 * 120.00335 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46904 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46917 * 120.00197 * 8 6 4 11 11 H 1.48492 * 109.47359 * 240.00205 * 8 6 4 12 12 N 1.46505 * 109.46950 * 119.99446 * 2 1 3 13 13 C 1.46502 * 119.99932 * 60.00371 * 12 2 1 14 14 C 1.34773 * 120.00098 * 240.00048 * 12 2 1 15 15 O 1.21276 * 120.00070 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99836 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.47619 * 60.00005 * 16 14 12 18 18 C 1.53004 * 109.47412 * 299.99852 * 16 14 12 19 19 C 1.50703 * 109.47140 * 180.02562 * 16 14 12 20 20 C 1.33394 * 125.20083 * 240.00306 * 19 16 14 21 21 C 1.38427 * 114.91995 * 180.02562 * 20 19 16 22 22 C 1.33386 * 114.91794 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20446 * 60.01893 * 19 16 14 24 24 H 1.09000 * 109.47467 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47410 * 299.99969 * 1 2 3 26 26 H 1.09006 * 109.47147 * 60.00537 * 1 2 3 27 27 H 0.97000 * 119.99828 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47368 * 269.99930 * 13 12 2 29 29 H 1.09006 * 109.47431 * 29.99459 * 13 12 2 30 30 H 1.08995 * 109.47005 * 149.99759 * 13 12 2 31 31 H 1.08997 * 109.46854 * 300.00622 * 18 16 14 32 32 H 1.08998 * 109.46629 * 60.00012 * 18 16 14 33 33 H 1.08992 * 109.47371 * 180.02562 * 18 16 14 34 34 H 1.08000 * 122.53490 * 359.74253 * 20 19 16 35 35 H 1.07999 * 122.53667 * 179.97438 * 21 20 19 36 36 H 1.08002 * 125.19644 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1475 -2.2865 -3.6035 10 1 1.1679 -1.5868 -4.8164 11 1 3.1474 -0.1861 -4.8159 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0355 2.0834 15 8 3.0857 1.1257 1.8917 16 6 3.2958 -0.7460 3.3136 17 1 3.9015 -1.6022 3.0168 18 6 2.1061 -1.2273 4.1467 19 6 4.1324 0.2015 4.1343 20 6 5.4161 0.0194 4.4479 21 6 5.9779 1.0263 5.2140 22 6 5.1505 2.0262 5.5219 23 16 3.5655 1.7162 4.8254 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 0.7088 1.1610 -3.4844 28 1 0.7375 -2.1443 1.9995 29 1 1.5294 -2.5969 0.4710 30 1 2.4628 -2.5817 1.9866 31 1 1.5004 -0.3712 4.4435 32 1 1.5006 -1.9125 3.5533 33 1 2.4697 -1.7408 5.0366 34 1 5.9735 -0.8501 4.1321 35 1 7.0080 1.0038 5.5377 36 1 5.4138 2.8935 6.1092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158888079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:43 Heat of formation + Delta-G solvation = -17.264652 kcal Electronic energy + Delta-G solvation = -18463.733174 eV Core-core repulsion = 15653.200619 eV Total energy + Delta-G solvation = -2810.532555 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04210 -38.62022 -37.10654 -35.41127 -34.24800 -31.22957 -29.32533 -27.73553 -27.30410 -25.62834 -24.38065 -22.51626 -20.25642 -20.10134 -18.51202 -17.90309 -17.76069 -16.96545 -16.39241 -16.25555 -15.80676 -14.96537 -14.67734 -14.42151 -13.95386 -13.79264 -13.58971 -13.51946 -13.21039 -13.08128 -12.99021 -12.87522 -12.75645 -12.66187 -12.38805 -12.21602 -12.10718 -12.04546 -11.49057 -11.17640 -10.63356 -10.44927 -9.52824 -9.31813 -9.24063 -8.14590 -6.31162 0.14294 0.81899 1.24024 1.40554 1.42364 1.53540 1.81315 1.88588 2.34415 2.53792 3.13554 3.56866 3.78913 4.12688 4.22009 4.28786 4.49890 4.66801 4.72111 4.72997 4.76662 4.84084 4.88548 4.90652 5.03592 5.07333 5.21930 5.28531 5.42547 5.48850 5.60453 5.66310 5.68502 6.04854 6.16996 6.77505 6.84593 7.32536 7.49464 8.89999 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.005064 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.935305 B = 5528.296725 C = 5663.493425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.262 3.738 3 H 0.006 0.994 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.597 5.597 13 C 0.075 3.925 14 C 0.494 3.506 15 O -0.591 6.591 16 C -0.033 4.033 17 H 0.133 0.867 18 C -0.147 4.147 19 C -0.166 4.166 20 C -0.146 4.146 21 C -0.140 4.140 22 C -0.225 4.225 23 S 0.079 5.921 24 H 0.048 0.952 25 H 0.017 0.983 26 H 0.066 0.934 27 H 0.264 0.736 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -6.882 16.068 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.160 3.840 3 H 0.024 0.976 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.328 5.328 13 C -0.067 4.067 14 C 0.282 3.718 15 O -0.473 6.473 16 C -0.056 4.056 17 H 0.150 0.850 18 C -0.205 4.205 19 C -0.284 4.284 20 C -0.176 4.176 21 C -0.170 4.170 22 C -0.360 4.360 23 S 0.344 5.656 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.816 -5.398 15.830 17.155 hybrid contribution 1.420 -0.455 -1.261 1.953 sum 5.236 -5.853 14.569 16.551 Atomic orbital electron populations 1.21852 0.97182 1.00121 0.99739 1.18512 0.91562 0.92144 0.81814 0.97646 1.21611 1.31708 1.13012 0.91077 0.91922 1.25756 0.95102 0.95646 1.02101 1.70041 1.37452 1.24014 1.24310 0.85396 0.78201 0.78488 0.78853 1.18710 1.19978 1.21343 1.48165 1.48989 1.13376 1.22236 1.22062 1.01353 0.80603 1.02697 1.21200 0.78486 0.86960 0.85186 1.90651 1.59595 1.19352 1.77670 1.19863 0.98141 0.96731 0.90857 0.84973 1.22092 0.95614 1.01993 1.00753 1.24125 0.98921 0.99393 1.05985 1.20427 0.93248 1.02301 1.01639 1.20403 1.02132 0.93745 1.00740 1.25972 0.96347 1.05309 1.08387 1.84496 1.14345 1.19008 1.47782 0.93297 0.96368 0.91575 0.92711 0.91068 0.91305 0.88862 0.93735 0.88843 0.88695 0.82437 0.81673 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.36 8.97 71.98 0.65 -5.71 16 2 C 0.26 13.77 2.64 44.24 0.12 13.89 16 3 H 0.01 0.35 6.90 -2.39 -0.02 0.34 16 4 C -0.54 -29.18 7.99 25.60 0.20 -28.98 16 5 H 0.06 3.30 7.33 -2.91 -0.02 3.27 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.36 16 8 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 N -0.60 -25.12 2.75 -826.81 -2.28 -27.40 16 13 C 0.07 2.25 7.80 127.77 1.00 3.24 16 14 C 0.49 20.59 7.05 87.66 0.62 21.21 16 15 O -0.59 -30.63 14.58 -3.02 -0.04 -30.67 16 16 C -0.03 -0.96 2.30 -12.28 -0.03 -0.99 16 17 H 0.13 3.13 7.35 -2.39 -0.02 3.11 16 18 C -0.15 -3.32 8.75 71.98 0.63 -2.69 16 19 C -0.17 -4.99 4.60 24.59 0.11 -4.88 16 20 C -0.15 -3.70 10.02 21.22 0.21 -3.49 16 21 C -0.14 -3.19 10.18 21.22 0.22 -2.97 16 22 C -0.22 -5.46 11.23 66.72 0.75 -4.71 16 23 S 0.08 2.44 22.18 -56.49 -1.25 1.19 16 24 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 3.60 6.07 -2.38 -0.01 3.58 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.07 1.80 6.95 -2.39 -0.02 1.79 16 29 H 0.07 2.25 7.02 -2.38 -0.02 2.24 16 30 H 0.09 2.09 6.01 -2.39 -0.01 2.07 16 31 H 0.04 1.15 8.00 -2.39 -0.02 1.13 16 32 H 0.09 1.84 4.53 -2.39 -0.01 1.83 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 35 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -71.72 305.08 4.69 -67.02 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.08 Total: 12.91 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.92 Total: -14.90 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.03 Total: -80.76 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.04 Total: -30.67 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.25 Total: 1.19 kcal Total: -71.72 4.69 -67.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158888079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.757 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds