Wall clock time and date at job start Mon Mar 30 2020 00:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00145 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 H 1.09002 * 109.47152 * 300.00044 * 16 14 12 18 18 C 1.53001 * 109.47242 * 60.00427 * 16 14 12 19 19 C 1.50709 * 109.47122 * 180.02562 * 16 14 12 20 20 C 1.38421 * 122.53486 * 119.99684 * 19 16 14 21 21 C 1.33392 * 114.91848 * 179.97438 * 20 19 16 22 22 S 1.75893 * 109.59089 * 0.02562 * 21 20 19 23 23 C 1.33386 * 122.53773 * 299.71440 * 19 16 14 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 29 29 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 30 30 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 31 31 H 1.09002 * 109.47144 * 179.97438 * 18 16 14 32 32 H 1.08995 * 109.46867 * 299.99817 * 18 16 14 33 33 H 1.08994 * 109.47054 * 59.99750 * 18 16 14 34 34 H 1.08001 * 122.54646 * 359.96544 * 20 19 16 35 35 H 1.07997 * 125.20732 * 179.97438 * 21 20 19 36 36 H 1.08000 * 125.20523 * 0.02562 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 1 3.9004 -1.6023 -3.0178 18 6 2.1047 -1.2260 -4.1469 19 6 4.1328 0.2014 -4.1342 20 6 5.4631 -0.0445 -4.4272 21 6 6.0591 0.8943 -5.1640 22 16 4.9107 2.1760 -5.5276 23 6 3.6470 1.3373 -4.6371 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 0.7376 -2.1442 -1.9994 29 1 2.4629 -2.5818 -1.9864 30 1 1.5295 -2.5968 -0.4710 31 1 2.4677 -1.7393 -5.0373 32 1 1.4991 -1.9110 -3.5536 33 1 1.4993 -0.3694 -4.4431 34 1 5.9795 -0.9292 -4.0851 35 1 7.0893 0.8713 -5.4871 36 1 2.6334 1.6894 -4.5142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158889551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:47 Heat of formation + Delta-G solvation = 9.931296 kcal Electronic energy + Delta-G solvation = -18579.399296 eV Core-core repulsion = 15770.046046 eV Total energy + Delta-G solvation = -2809.353250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.88982 -37.68011 -35.43157 -33.55823 -32.25254 -30.19549 -28.51855 -26.46468 -25.17355 -25.01081 -23.13413 -20.98911 -18.86097 -18.09294 -17.64734 -16.86832 -16.03551 -15.74153 -15.03193 -14.68340 -14.20899 -13.64279 -13.28250 -12.97979 -12.81340 -12.62383 -12.46781 -12.33991 -12.23756 -12.07430 -11.74509 -11.65771 -11.34098 -11.07686 -11.01144 -10.72583 -10.55394 -10.14677 -9.64641 -9.34532 -8.94949 -8.64407 -8.61819 -8.24557 -7.71822 -6.15440 -4.15867 1.17033 1.79028 2.09918 2.81635 3.22689 3.30319 3.36677 3.39492 3.87664 4.34793 4.84422 4.93275 5.15272 5.18795 5.32686 5.36668 5.44282 5.68897 5.73036 5.79890 5.84872 5.94662 6.10566 6.15935 6.24335 6.26779 6.38558 6.48352 6.51054 6.64679 6.82395 7.13877 7.37131 7.62959 8.19586 8.47501 8.84160 8.93859 9.45917 10.97280 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.005183 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.467847 B = 5400.568505 C = 5664.016319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.586 5.586 13 C 0.079 3.921 14 C 0.511 3.489 15 O -0.544 6.544 16 C -0.052 4.052 17 H 0.101 0.899 18 C -0.150 4.150 19 C -0.086 4.086 20 C -0.121 4.121 21 C -0.220 4.220 22 S 0.077 5.923 23 C -0.170 4.170 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.139 0.861 35 H 0.161 0.839 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -0.962 -18.012 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.127 3.873 3 H 0.079 0.921 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.317 5.317 13 C -0.064 4.064 14 C 0.297 3.703 15 O -0.422 6.422 16 C -0.076 4.076 17 H 0.119 0.881 18 C -0.207 4.207 19 C -0.098 4.098 20 C -0.152 4.152 21 C -0.355 4.355 22 S 0.340 5.660 23 C -0.306 4.306 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.179 0.821 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.911 1.024 -18.503 18.630 hybrid contribution -0.615 -0.655 1.210 1.507 sum 1.296 0.369 -17.293 17.345 Atomic orbital electron populations 1.22439 0.99119 1.01043 0.99142 1.19272 0.89912 0.95222 0.82882 0.92053 1.21162 1.32641 1.14237 0.88509 0.90323 1.24863 0.95671 0.96562 0.95636 1.69877 1.45242 1.40190 0.97969 0.86911 0.80399 0.83880 0.77472 1.20408 1.22153 1.18849 1.47810 1.49364 1.11721 1.22794 1.21812 0.98868 0.83024 1.02701 1.20270 0.78896 0.87123 0.84025 1.90653 1.57807 1.17138 1.76590 1.19988 0.97032 0.97361 0.93181 0.88118 1.22037 0.96807 1.02022 0.99874 1.18397 0.94125 0.96690 1.00557 1.20057 0.94051 1.00849 1.00211 1.25426 1.03387 0.98662 1.08023 1.84090 1.02947 1.25259 1.53749 1.25304 1.02974 0.98400 1.03919 0.93246 0.92591 0.94926 0.92445 0.93428 0.92238 0.89735 0.91779 0.90401 0.92318 0.84375 0.82133 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.67 37.16 0.32 -3.09 16 2 C 0.23 5.51 2.23 -69.08 -0.15 5.36 16 3 H 0.06 1.66 5.96 -51.93 -0.31 1.35 16 4 C -0.53 -14.52 8.57 -34.44 -0.30 -14.82 16 5 H 0.08 2.32 7.58 -52.49 -0.40 1.92 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 8 Si 0.88 21.96 24.37 -169.99 -4.14 17.82 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 11 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 12 N -0.59 -11.83 2.75 -175.27 -0.48 -12.31 16 13 C 0.08 1.25 7.80 59.85 0.47 1.71 16 14 C 0.51 10.08 6.98 -10.99 -0.08 10.00 16 15 O -0.54 -12.89 14.57 5.56 0.08 -12.80 16 16 C -0.05 -0.75 2.17 -92.92 -0.20 -0.95 16 17 H 0.10 1.32 7.29 -51.93 -0.38 0.94 16 18 C -0.15 -1.73 8.66 37.16 0.32 -1.41 16 19 C -0.09 -1.26 4.28 -106.25 -0.45 -1.72 16 20 C -0.12 -1.58 9.92 -41.21 -0.41 -1.99 16 21 C -0.22 -2.62 11.23 29.04 0.33 -2.30 16 22 S 0.08 0.96 23.34 -107.50 -2.51 -1.55 16 23 C -0.17 -2.50 9.27 29.04 0.27 -2.23 16 24 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 25 H 0.06 1.11 7.67 -51.93 -0.40 0.71 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 29 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 30 H 0.08 1.48 7.02 -51.93 -0.36 1.11 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.84 4.53 -51.93 -0.24 0.60 16 33 H 0.06 0.70 7.73 -51.93 -0.40 0.30 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.16 2.33 7.93 -52.49 -0.42 1.92 16 LS Contribution 297.37 15.07 4.48 4.48 Total: -1.00 -32.53 297.37 -6.40 -38.93 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.62 Total: 0.99 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 0.02 Total: -9.38 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.29 Total: -38.47 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.53 -6.40 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158889551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.859 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds