Wall clock time and date at job start Mon Mar 30 2020 00:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00145 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 H 1.09002 * 109.47152 * 300.00044 * 16 14 12 18 18 C 1.53001 * 109.47242 * 60.00427 * 16 14 12 19 19 C 1.50709 * 109.47122 * 180.02562 * 16 14 12 20 20 C 1.38421 * 122.53486 * 119.99684 * 19 16 14 21 21 C 1.33392 * 114.91848 * 179.97438 * 20 19 16 22 22 S 1.75893 * 109.59089 * 0.02562 * 21 20 19 23 23 C 1.33386 * 122.53773 * 299.71440 * 19 16 14 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 29 29 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 30 30 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 31 31 H 1.09002 * 109.47144 * 179.97438 * 18 16 14 32 32 H 1.08995 * 109.46867 * 299.99817 * 18 16 14 33 33 H 1.08994 * 109.47054 * 59.99750 * 18 16 14 34 34 H 1.08001 * 122.54646 * 359.96544 * 20 19 16 35 35 H 1.07997 * 125.20732 * 179.97438 * 21 20 19 36 36 H 1.08000 * 125.20523 * 0.02562 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 1 3.9004 -1.6023 -3.0178 18 6 2.1047 -1.2260 -4.1469 19 6 4.1328 0.2014 -4.1342 20 6 5.4631 -0.0445 -4.4272 21 6 6.0591 0.8943 -5.1640 22 16 4.9107 2.1760 -5.5276 23 6 3.6470 1.3373 -4.6371 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 0.7376 -2.1442 -1.9994 29 1 2.4629 -2.5818 -1.9864 30 1 1.5295 -2.5968 -0.4710 31 1 2.4677 -1.7393 -5.0373 32 1 1.4991 -1.9110 -3.5536 33 1 1.4993 -0.3694 -4.4431 34 1 5.9795 -0.9292 -4.0851 35 1 7.0893 0.8713 -5.4871 36 1 2.6334 1.6894 -4.5142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158889551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:46 Heat of formation + Delta-G solvation = -11.347616 kcal Electronic energy + Delta-G solvation = -18580.322019 eV Core-core repulsion = 15770.046046 eV Total energy + Delta-G solvation = -2810.275973 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29766 -38.88871 -37.12407 -35.12548 -33.93690 -31.86342 -29.56757 -27.82615 -27.17253 -26.10688 -24.47909 -22.47062 -20.25213 -19.34334 -18.85414 -18.71945 -17.58593 -17.29881 -16.66946 -15.99666 -15.58795 -15.02855 -14.87043 -14.52420 -14.15981 -13.98237 -13.79545 -13.74093 -13.52691 -13.34217 -13.11606 -12.96679 -12.87318 -12.66162 -12.32196 -12.15767 -12.01583 -11.60505 -11.55382 -11.35395 -10.80267 -10.50689 -9.62855 -9.36541 -9.24877 -8.36057 -6.39838 0.16048 0.80642 1.11006 1.24158 1.34116 1.42483 1.73561 1.82011 2.26458 2.41517 2.99651 3.69003 3.83615 4.11849 4.25280 4.33794 4.44622 4.47423 4.57206 4.57430 4.61472 4.74829 4.77523 4.90785 4.92170 5.01481 5.07473 5.18168 5.30085 5.33673 5.50649 5.51164 5.62040 5.74278 6.20779 6.62316 6.77636 7.22099 7.41782 8.79940 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.005183 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.467847 B = 5400.568505 C = 5664.016319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.231 3.769 3 H 0.027 0.973 4 C -0.524 4.524 5 H 0.047 0.953 6 C 0.023 3.977 7 N -0.939 5.939 8 Si 0.940 3.060 9 H -0.253 1.253 10 H -0.296 1.296 11 H -0.266 1.266 12 N -0.594 5.594 13 C 0.075 3.925 14 C 0.502 3.498 15 O -0.593 6.593 16 C -0.042 4.042 17 H 0.120 0.880 18 C -0.144 4.144 19 C -0.098 4.098 20 C -0.139 4.139 21 C -0.212 4.212 22 S 0.090 5.910 23 C -0.197 4.197 24 H 0.039 0.961 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.268 0.732 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.158 0.842 35 H 0.191 0.809 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 -1.525 -20.096 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.127 3.873 3 H 0.045 0.955 4 C -0.563 4.563 5 H 0.065 0.935 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.767 3.233 9 H -0.178 1.178 10 H -0.224 1.224 11 H -0.190 1.190 12 N -0.324 5.324 13 C -0.067 4.067 14 C 0.291 3.709 15 O -0.474 6.474 16 C -0.066 4.066 17 H 0.137 0.863 18 C -0.201 4.201 19 C -0.111 4.111 20 C -0.169 4.169 21 C -0.347 4.347 22 S 0.354 5.646 23 C -0.332 4.332 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.175 0.825 35 H 0.208 0.792 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.451 0.423 -20.620 20.675 hybrid contribution -0.365 -0.501 1.812 1.915 sum 1.086 -0.078 -18.808 18.840 Atomic orbital electron populations 1.22287 0.96607 1.02317 0.99731 1.18926 0.91785 0.93311 0.83245 0.95521 1.21382 1.31591 1.13106 0.90194 0.93470 1.25620 0.97166 0.99363 0.95394 1.70000 1.47179 1.42111 0.98570 0.85996 0.80022 0.80301 0.76950 1.17788 1.22389 1.19049 1.47883 1.49501 1.13385 1.21637 1.22077 1.01720 0.80377 1.02493 1.21241 0.77792 0.86812 0.85080 1.90622 1.59373 1.19493 1.77900 1.20008 0.98361 0.97212 0.91010 0.86258 1.22035 0.95548 1.02048 1.00447 1.18618 0.95015 0.96838 1.00587 1.20282 0.93562 1.02129 1.00964 1.25847 1.04457 0.97587 1.06795 1.84006 1.02399 1.25236 1.52990 1.25387 1.03406 0.99240 1.05200 0.94217 0.90968 0.92664 0.92289 0.90098 0.89038 0.91986 0.89220 0.89272 0.93065 0.82471 0.79222 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.24 8.67 71.98 0.62 -5.61 16 2 C 0.23 11.13 2.23 44.24 0.10 11.23 16 3 H 0.03 1.48 5.96 -2.39 -0.01 1.47 16 4 C -0.52 -29.48 8.57 25.60 0.22 -29.26 16 5 H 0.05 2.88 7.58 -2.91 -0.02 2.86 16 6 C 0.02 1.35 5.45 84.65 0.46 1.81 16 7 N -0.94 -57.77 13.96 21.45 0.30 -57.47 16 8 Si 0.94 45.57 24.37 68.60 1.67 47.24 16 9 H -0.25 -11.18 6.87 99.48 0.68 -10.49 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.27 -12.86 6.53 99.48 0.65 -12.21 16 12 N -0.59 -23.52 2.75 -826.82 -2.28 -25.80 16 13 C 0.08 2.20 7.80 127.77 1.00 3.19 16 14 C 0.50 19.56 6.98 87.66 0.61 20.17 16 15 O -0.59 -28.61 14.57 -3.01 -0.04 -28.65 16 16 C -0.04 -1.15 2.17 -12.28 -0.03 -1.18 16 17 H 0.12 2.78 7.29 -2.39 -0.02 2.76 16 18 C -0.14 -2.87 8.66 71.98 0.62 -2.25 16 19 C -0.10 -2.74 4.28 -20.92 -0.09 -2.83 16 20 C -0.14 -3.33 9.92 21.22 0.21 -3.12 16 21 C -0.21 -4.53 11.23 66.72 0.75 -3.78 16 22 S 0.09 2.14 23.34 -56.49 -1.32 0.82 16 23 C -0.20 -5.65 9.27 66.72 0.62 -5.04 16 24 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 25 H 0.07 2.70 7.67 -2.39 -0.02 2.68 16 26 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.08 1.84 6.95 -2.39 -0.02 1.83 16 29 H 0.09 2.06 6.01 -2.39 -0.01 2.05 16 30 H 0.06 2.11 7.02 -2.39 -0.02 2.09 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.56 4.53 -2.39 -0.01 1.55 16 33 H 0.05 1.11 7.73 -2.39 -0.02 1.09 16 34 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.15 4.45 7.93 -2.91 -0.02 4.43 16 Total: -1.00 -72.93 297.37 4.43 -68.50 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.00 Total: 12.02 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 5.10 Total: -16.66 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.98 Total: -83.27 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.04 Total: -28.65 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -72.93 4.43 -68.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158889551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.154 kcal (2) G-P(sol) polarization free energy of solvation -72.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds