Wall clock time and date at job start Mon Mar 30 2020 00:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47111 * 2 1 4 4 C 1.50698 * 109.47399 * 239.99708 * 2 1 3 5 5 H 1.08002 * 119.99867 * 240.00476 * 4 2 1 6 6 C 1.37873 * 120.00295 * 59.99749 * 4 2 1 7 7 N 1.31513 * 119.99534 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00448 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47111 * 59.99762 * 8 6 4 10 10 H 1.48496 * 109.47435 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47153 * 300.00174 * 8 6 4 12 12 N 1.46504 * 109.47176 * 119.99532 * 2 1 3 13 13 C 1.46492 * 120.00091 * 54.48382 * 12 2 1 14 14 C 1.34785 * 119.99876 * 234.48486 * 12 2 1 15 15 O 1.21282 * 119.99904 * 184.36567 * 14 12 2 16 16 C 1.50695 * 120.00019 * 4.37268 * 14 12 2 17 17 H 1.08998 * 109.47410 * 309.54082 * 16 14 12 18 18 C 1.53001 * 109.47353 * 69.54189 * 16 14 12 19 19 C 1.50693 * 109.47151 * 189.54043 * 16 14 12 20 20 C 1.38428 * 122.53970 * 119.73783 * 19 16 14 21 21 C 1.33389 * 114.92151 * 179.76478 * 20 19 16 22 22 S 1.75890 * 109.59354 * 0.47157 * 21 20 19 23 23 C 1.33390 * 122.54075 * 300.02351 * 19 16 14 24 24 H 1.08995 * 109.47555 * 60.00564 * 1 2 3 25 25 H 1.09010 * 109.47029 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47419 * 300.00177 * 1 2 3 27 27 H 0.97004 * 119.99792 * 179.97438 * 7 6 4 28 28 H 1.08990 * 109.47557 * 264.71342 * 13 12 2 29 29 H 1.09006 * 109.47007 * 144.71384 * 13 12 2 30 30 H 1.09007 * 109.47106 * 24.71773 * 13 12 2 31 31 H 1.09001 * 109.47508 * 182.12172 * 18 16 14 32 32 H 1.09009 * 109.47231 * 302.11837 * 18 16 14 33 33 H 1.08995 * 109.47517 * 62.11640 * 18 16 14 34 34 H 1.08000 * 122.53794 * 359.97438 * 20 19 16 35 35 H 1.07996 * 125.20839 * 180.20965 * 21 20 19 36 36 H 1.08003 * 125.20272 * 359.97438 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9427 0.8294 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8260 -0.4210 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 7 2.0183 -0.6905 1.1963 13 6 1.5676 -2.0529 1.4909 14 6 2.8822 -0.0723 2.0257 15 8 3.3478 -0.6708 2.9723 16 6 3.2695 1.3627 1.7772 17 1 3.5812 1.4804 0.7394 18 6 2.0696 2.2703 2.0553 19 6 4.4076 1.7410 2.6895 20 6 5.6373 2.1601 2.2115 21 6 6.5332 2.4616 3.1527 22 16 5.8277 2.2029 4.7430 23 6 4.3083 1.6922 4.0188 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7087 1.1609 -3.4845 28 1 0.7239 -2.0155 2.1798 29 1 2.3833 -2.6151 1.9456 30 1 1.2604 -2.5419 0.5664 31 1 2.3384 3.3044 1.8394 32 1 1.2340 1.9724 1.4219 33 1 1.7814 2.1809 3.1027 34 1 5.8538 2.2403 1.1565 35 1 7.5393 2.8073 2.9668 36 1 3.4293 1.3863 4.5666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158889679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:50 Heat of formation + Delta-G solvation = -4.277411 kcal Electronic energy + Delta-G solvation = -18712.602037 eV Core-core repulsion = 15902.632651 eV Total energy + Delta-G solvation = -2809.969386 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.71683 -37.49012 -35.51216 -32.73830 -32.61872 -29.17956 -28.58944 -26.42998 -25.29583 -24.77504 -22.40187 -21.19259 -18.93429 -17.85927 -17.42357 -16.56564 -16.15915 -15.27835 -14.70721 -14.44296 -14.20838 -13.52559 -13.24618 -12.82684 -12.66606 -12.46030 -12.21800 -12.07386 -11.75584 -11.64856 -11.31822 -11.18784 -11.07218 -10.95830 -10.94281 -10.68144 -10.42617 -10.28886 -10.17216 -9.36453 -8.93620 -8.54345 -8.47634 -8.10825 -7.62409 -6.19579 -4.28127 1.31276 1.92212 2.22622 2.98364 3.22295 3.27476 3.29898 3.43379 4.04870 4.32222 5.08445 5.11073 5.21894 5.40870 5.58819 5.66814 5.72851 5.91872 6.10872 6.16412 6.20557 6.21880 6.35596 6.45006 6.49582 6.58431 6.66030 6.72685 6.86176 6.89000 7.20536 7.39987 7.65731 7.86042 8.10765 8.44050 8.75148 9.03612 9.40385 10.84642 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.005565 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.774242 B = 5030.234032 C = 5404.040165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.249 3.751 3 H 0.060 0.940 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.591 5.591 13 C 0.096 3.904 14 C 0.516 3.484 15 O -0.568 6.568 16 C -0.050 4.050 17 H 0.109 0.891 18 C -0.140 4.140 19 C -0.086 4.086 20 C -0.118 4.118 21 C -0.222 4.222 22 S 0.064 5.936 23 C -0.166 4.166 24 H 0.094 0.906 25 H 0.033 0.967 26 H 0.013 0.987 27 H 0.265 0.735 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 4.065 8.391 10.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.321 5.321 13 C -0.048 4.048 14 C 0.303 3.697 15 O -0.449 6.449 16 C -0.074 4.074 17 H 0.127 0.873 18 C -0.198 4.198 19 C -0.098 4.098 20 C -0.149 4.149 21 C -0.357 4.357 22 S 0.326 5.674 23 C -0.301 4.301 24 H 0.113 0.887 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.178 0.822 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.886 4.030 10.205 12.011 hybrid contribution -0.221 -0.727 -2.505 2.618 sum 4.666 3.303 7.700 9.590 Atomic orbital electron populations 1.22127 0.97939 1.00005 1.00841 1.19182 0.91593 0.93658 0.80749 0.92200 1.21355 1.32017 1.13385 0.90219 0.92152 1.24869 0.94732 0.94946 0.98955 1.69839 1.36095 1.22597 1.24098 0.86560 0.79292 0.79773 0.81863 1.20183 1.21129 1.20178 1.48205 1.43762 1.15044 1.25112 1.21367 0.98506 0.84122 1.00784 1.20291 0.78722 0.88404 0.82267 1.90592 1.55454 1.67230 1.31608 1.19946 0.94098 0.93138 1.00221 0.87308 1.21871 0.97001 0.98930 1.01975 1.18522 0.95465 1.02459 0.93313 1.20140 0.92603 1.01351 1.00801 1.25389 1.03848 1.11364 0.95059 1.84008 1.07450 1.66238 1.09696 1.25309 1.00799 1.06710 0.97325 0.88702 0.94808 0.96760 0.92493 0.94323 0.92458 0.90603 0.91765 0.90300 0.92817 0.84198 0.82238 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.66 37.15 0.32 -2.96 16 2 C 0.25 5.64 1.69 -69.09 -0.12 5.52 16 3 H 0.06 1.39 4.48 -51.93 -0.23 1.16 16 4 C -0.53 -13.40 8.08 -34.44 -0.28 -13.67 16 5 H 0.06 1.56 7.80 -52.49 -0.41 1.15 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -22.97 11.32 55.43 0.63 -22.34 16 8 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.59 -12.55 2.75 -175.27 -0.48 -13.03 16 13 C 0.10 1.85 9.30 59.84 0.56 2.41 16 14 C 0.52 10.77 6.88 -10.98 -0.08 10.69 16 15 O -0.57 -12.89 14.66 5.56 0.08 -12.81 16 16 C -0.05 -0.91 2.11 -92.93 -0.20 -1.10 16 17 H 0.11 2.05 7.06 -51.93 -0.37 1.68 16 18 C -0.14 -2.25 8.65 37.16 0.32 -1.92 16 19 C -0.09 -1.44 4.38 -106.25 -0.47 -1.91 16 20 C -0.12 -1.79 9.92 -41.21 -0.41 -2.20 16 21 C -0.22 -2.95 11.23 29.04 0.33 -2.63 16 22 S 0.06 0.86 23.34 -107.50 -2.51 -1.65 16 23 C -0.17 -2.66 9.08 29.04 0.26 -2.39 16 24 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 25 H 0.03 0.71 7.39 -51.92 -0.38 0.33 16 26 H 0.01 0.27 7.64 -51.93 -0.40 -0.13 16 27 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.10 7.53 -51.93 -0.39 0.71 16 30 H 0.08 1.46 7.30 -51.93 -0.38 1.08 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.36 5.37 -51.92 -0.28 1.09 16 33 H 0.05 0.80 7.67 -51.93 -0.40 0.41 16 34 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.16 2.54 7.83 -52.48 -0.41 2.13 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -27.57 305.05 -7.34 -34.91 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.79 Total: 3.84 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 0.15 Total: -8.55 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.14 Total: -35.37 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.57 -7.34 -34.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158889679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.631 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds