Wall clock time and date at job start Mon Mar 30 2020 00:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47111 * 2 1 4 4 C 1.50698 * 109.47399 * 239.99708 * 2 1 3 5 5 H 1.08002 * 119.99867 * 240.00476 * 4 2 1 6 6 C 1.37873 * 120.00295 * 59.99749 * 4 2 1 7 7 N 1.31513 * 119.99534 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00448 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47111 * 59.99762 * 8 6 4 10 10 H 1.48496 * 109.47435 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47153 * 300.00174 * 8 6 4 12 12 N 1.46504 * 109.47176 * 119.99532 * 2 1 3 13 13 C 1.46492 * 120.00091 * 54.48382 * 12 2 1 14 14 C 1.34785 * 119.99876 * 234.48486 * 12 2 1 15 15 O 1.21282 * 119.99904 * 184.36567 * 14 12 2 16 16 C 1.50695 * 120.00019 * 4.37268 * 14 12 2 17 17 H 1.08998 * 109.47410 * 309.54082 * 16 14 12 18 18 C 1.53001 * 109.47353 * 69.54189 * 16 14 12 19 19 C 1.50693 * 109.47151 * 189.54043 * 16 14 12 20 20 C 1.38428 * 122.53970 * 119.73783 * 19 16 14 21 21 C 1.33389 * 114.92151 * 179.76478 * 20 19 16 22 22 S 1.75890 * 109.59354 * 0.47157 * 21 20 19 23 23 C 1.33390 * 122.54075 * 300.02351 * 19 16 14 24 24 H 1.08995 * 109.47555 * 60.00564 * 1 2 3 25 25 H 1.09010 * 109.47029 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47419 * 300.00177 * 1 2 3 27 27 H 0.97004 * 119.99792 * 179.97438 * 7 6 4 28 28 H 1.08990 * 109.47557 * 264.71342 * 13 12 2 29 29 H 1.09006 * 109.47007 * 144.71384 * 13 12 2 30 30 H 1.09007 * 109.47106 * 24.71773 * 13 12 2 31 31 H 1.09001 * 109.47508 * 182.12172 * 18 16 14 32 32 H 1.09009 * 109.47231 * 302.11837 * 18 16 14 33 33 H 1.08995 * 109.47517 * 62.11640 * 18 16 14 34 34 H 1.08000 * 122.53794 * 359.97438 * 20 19 16 35 35 H 1.07996 * 125.20839 * 180.20965 * 21 20 19 36 36 H 1.08003 * 125.20272 * 359.97438 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9427 0.8294 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8260 -0.4210 -5.2204 11 1 3.8064 -1.1211 -4.0080 12 7 2.0183 -0.6905 1.1963 13 6 1.5676 -2.0529 1.4909 14 6 2.8822 -0.0723 2.0257 15 8 3.3478 -0.6708 2.9723 16 6 3.2695 1.3627 1.7772 17 1 3.5812 1.4804 0.7394 18 6 2.0696 2.2703 2.0553 19 6 4.4076 1.7410 2.6895 20 6 5.6373 2.1601 2.2115 21 6 6.5332 2.4616 3.1527 22 16 5.8277 2.2029 4.7430 23 6 4.3083 1.6922 4.0188 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7087 1.1609 -3.4845 28 1 0.7239 -2.0155 2.1798 29 1 2.3833 -2.6151 1.9456 30 1 1.2604 -2.5419 0.5664 31 1 2.3384 3.3044 1.8394 32 1 1.2340 1.9724 1.4219 33 1 1.7814 2.1809 3.1027 34 1 5.8538 2.2403 1.1565 35 1 7.5393 2.8073 2.9668 36 1 3.4293 1.3863 4.5666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158889679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:49 Heat of formation + Delta-G solvation = -18.253103 kcal Electronic energy + Delta-G solvation = -18713.208068 eV Core-core repulsion = 15902.632651 eV Total energy + Delta-G solvation = -2810.575417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25995 -38.81163 -37.25974 -34.54850 -34.02473 -30.97579 -29.79233 -27.98474 -27.20211 -26.05729 -23.81847 -22.83962 -20.31893 -19.25095 -18.80175 -18.31141 -17.72686 -16.91257 -16.34049 -16.07199 -15.62053 -15.02440 -14.82158 -14.26326 -14.05393 -13.80090 -13.60803 -13.48329 -13.22407 -13.17340 -12.96891 -12.85185 -12.73572 -12.52466 -12.36811 -12.30781 -12.16014 -11.96997 -11.57295 -11.20591 -10.61514 -10.44056 -9.61721 -9.35372 -9.22642 -8.12766 -6.27166 0.16909 0.81879 1.09998 1.44143 1.46089 1.52315 1.72932 1.82578 2.37999 2.55093 3.15195 3.75654 3.84872 4.14433 4.32520 4.35625 4.51573 4.61981 4.66662 4.71214 4.76737 4.87652 4.90156 4.94844 4.99751 5.08610 5.17988 5.19528 5.43168 5.49182 5.59822 5.65612 5.77281 6.03043 6.23593 6.66289 6.86558 7.33502 7.47162 8.89532 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.005565 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.774242 B = 5030.234032 C = 5404.040165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.255 3.745 3 H 0.055 0.945 4 C -0.546 4.546 5 H 0.047 0.953 6 C 0.032 3.968 7 N -0.905 5.905 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.597 5.597 13 C 0.095 3.905 14 C 0.511 3.489 15 O -0.588 6.588 16 C -0.046 4.046 17 H 0.095 0.905 18 C -0.132 4.132 19 C -0.101 4.101 20 C -0.144 4.144 21 C -0.210 4.210 22 S 0.105 5.895 23 C -0.188 4.188 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.267 0.733 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.146 0.854 35 H 0.192 0.808 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.090 4.569 8.825 11.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.153 3.847 3 H 0.072 0.928 4 C -0.585 4.585 5 H 0.065 0.935 6 C -0.169 4.169 7 N -0.543 5.543 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.048 4.048 14 C 0.299 3.701 15 O -0.471 6.471 16 C -0.069 4.069 17 H 0.113 0.887 18 C -0.190 4.190 19 C -0.113 4.113 20 C -0.174 4.174 21 C -0.345 4.345 22 S 0.368 5.632 23 C -0.324 4.324 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.209 0.791 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.750 4.532 10.645 12.920 hybrid contribution -0.446 -0.889 -2.572 2.758 sum 5.304 3.643 8.073 10.324 Atomic orbital electron populations 1.21958 0.97238 0.99923 1.00683 1.19008 0.91986 0.93194 0.80463 0.92759 1.21540 1.32113 1.13229 0.91572 0.93466 1.25438 0.94923 0.95539 1.01043 1.69923 1.36557 1.23272 1.24592 0.85744 0.78554 0.78853 0.79268 1.20044 1.20600 1.20341 1.48261 1.43983 1.15656 1.24807 1.21423 0.98988 0.83364 1.00994 1.20795 0.78093 0.89439 0.81737 1.90567 1.56071 1.68013 1.32415 1.19882 0.95514 0.91669 0.99879 0.88651 1.21810 0.95633 0.99427 1.02120 1.18564 0.95749 1.03549 0.93469 1.20247 0.92551 1.02931 1.01708 1.25818 1.04759 1.09273 0.94609 1.83851 1.05305 1.64953 1.09047 1.25399 1.02235 1.07277 0.97457 0.90659 0.94776 0.94986 0.92407 0.92611 0.92689 0.90884 0.90000 0.91766 0.91964 0.83596 0.79110 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 8.66 71.98 0.62 -5.42 16 2 C 0.25 11.57 1.69 44.24 0.07 11.65 16 3 H 0.05 2.54 4.48 -2.39 -0.01 2.53 16 4 C -0.55 -27.65 8.08 25.60 0.21 -27.44 16 5 H 0.05 2.47 7.80 -2.91 -0.02 2.44 16 6 C 0.03 1.60 5.30 84.65 0.45 2.04 16 7 N -0.91 -46.67 11.32 21.45 0.24 -46.43 16 8 Si 0.95 40.86 29.54 68.60 2.03 42.88 16 9 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 12 N -0.60 -25.35 2.75 -826.81 -2.28 -27.63 16 13 C 0.10 3.66 9.30 127.77 1.19 4.85 16 14 C 0.51 21.36 6.88 87.65 0.60 21.96 16 15 O -0.59 -26.69 14.66 -3.04 -0.04 -26.74 16 16 C -0.05 -1.65 2.11 -12.29 -0.03 -1.68 16 17 H 0.10 3.66 7.06 -2.39 -0.02 3.64 16 18 C -0.13 -4.17 8.65 71.98 0.62 -3.55 16 19 C -0.10 -3.33 4.38 -20.92 -0.09 -3.42 16 20 C -0.14 -4.17 9.92 21.22 0.21 -3.96 16 21 C -0.21 -5.04 11.23 66.72 0.75 -4.29 16 22 S 0.11 2.60 23.34 -56.49 -1.32 1.28 16 23 C -0.19 -5.84 9.08 66.72 0.61 -5.23 16 24 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 25 H 0.03 1.42 7.39 -2.38 -0.02 1.41 16 26 H 0.03 1.23 7.64 -2.39 -0.02 1.21 16 27 H 0.27 13.19 8.31 -92.71 -0.77 12.41 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 2.11 7.53 -2.38 -0.02 2.09 16 30 H 0.07 2.81 7.30 -2.38 -0.02 2.79 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.20 5.37 -2.38 -0.01 2.19 16 33 H 0.06 1.82 7.67 -2.39 -0.02 1.81 16 34 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.19 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.15 4.85 7.83 -2.91 -0.02 4.83 16 Total: -1.00 -57.14 305.05 4.92 -52.22 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.07 Total: 18.89 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 5.22 Total: -14.49 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -2.03 Total: -74.06 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.04 Total: -26.74 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.32 Total: 1.28 kcal Total: -57.14 4.92 -52.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158889679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.969 kcal (2) G-P(sol) polarization free energy of solvation -57.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds