Wall clock time and date at job start Mon Mar 30 2020 00:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47022 * 2 1 4 4 C 1.50699 * 109.46981 * 120.00789 * 2 1 3 5 5 O 1.21273 * 120.00596 * 102.25253 * 4 2 1 6 6 N 1.34780 * 119.99348 * 282.24970 * 4 2 1 7 7 C 1.46504 * 119.99814 * 183.91701 * 6 4 2 8 8 C 1.46494 * 120.00190 * 3.92422 * 6 4 2 9 9 H 1.08995 * 109.47762 * 5.92158 * 8 6 4 10 10 C 1.53004 * 109.47204 * 125.92266 * 8 6 4 11 11 C 1.50705 * 109.47021 * 245.91950 * 8 6 4 12 12 H 1.07995 * 120.00043 * 0.02562 * 11 8 6 13 13 C 1.37878 * 120.00086 * 179.97438 * 11 8 6 14 14 N 1.31514 * 119.99784 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99975 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.47105 * 59.99950 * 15 13 11 17 17 H 1.48497 * 109.47040 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47032 * 299.99947 * 15 13 11 19 19 C 1.50702 * 109.47131 * 240.00320 * 2 1 3 20 20 C 1.38422 * 122.54240 * 119.74136 * 19 2 1 21 21 C 1.33392 * 114.92376 * 179.76194 * 20 19 2 22 22 S 1.75881 * 109.59078 * 0.47484 * 21 20 19 23 23 C 1.33396 * 122.53942 * 300.02769 * 19 2 1 24 24 H 1.09006 * 109.46714 * 63.82996 * 1 2 3 25 25 H 1.08997 * 109.47058 * 183.82421 * 1 2 3 26 26 H 1.08994 * 109.46972 * 303.83018 * 1 2 3 27 27 H 1.09001 * 109.47140 * 274.88544 * 7 6 4 28 28 H 1.09000 * 109.46965 * 34.88736 * 7 6 4 29 29 H 1.08997 * 109.46783 * 154.88783 * 7 6 4 30 30 H 1.09009 * 109.47149 * 179.97438 * 10 8 6 31 31 H 1.09002 * 109.47036 * 60.00182 * 10 8 6 32 32 H 1.08996 * 109.47247 * 299.99706 * 10 8 6 33 33 H 0.97006 * 119.99637 * 180.02562 * 14 13 11 34 34 H 1.08005 * 122.53737 * 359.97438 * 20 19 2 35 35 H 1.07995 * 125.20071 * 180.20945 * 21 20 19 36 36 H 1.08003 * 125.20021 * 359.97438 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 8 2.4446 -1.8481 1.1479 6 7 2.0234 -0.0817 2.4224 7 6 2.5904 -0.7400 3.6021 8 6 1.4466 1.2599 2.5386 9 1 0.9843 1.5399 1.5921 10 6 0.3890 1.2664 3.6443 11 6 2.5341 2.2465 2.8779 12 1 3.5529 1.9081 2.9949 13 6 2.2284 3.5814 3.0380 14 7 0.9877 3.9936 2.8951 15 14 3.5764 4.8045 3.4579 16 1 4.6027 4.7977 2.3847 17 1 2.9918 6.1644 3.5757 18 1 4.2063 4.4235 4.7476 19 6 2.0324 -0.7103 -1.2305 20 6 2.8263 -0.0874 -2.1779 21 6 3.1885 -0.8596 -3.2035 22 16 2.4983 -2.4652 -3.0053 23 6 1.7410 -1.9855 -1.4921 24 1 -0.3633 0.4533 -0.9224 25 1 -0.3633 -1.0254 0.0685 26 1 -0.3633 0.5721 0.8536 27 1 1.8372 -1.3841 4.0559 28 1 3.4505 -1.3401 3.3050 29 1 2.9052 0.0145 4.3229 30 1 -0.0399 2.2648 3.7310 31 1 0.8513 0.9864 4.5909 32 1 -0.3975 0.5528 3.3989 33 1 0.7727 4.9328 3.0073 34 1 3.1324 0.9448 -2.0915 35 1 3.8069 -0.5456 -4.0313 36 1 1.1333 -2.6256 -0.8696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158889788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:52 Heat of formation + Delta-G solvation = -18.813380 kcal Electronic energy + Delta-G solvation = -18717.709638 eV Core-core repulsion = 15907.109926 eV Total energy + Delta-G solvation = -2810.599713 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25036 -38.81529 -37.24989 -34.53710 -34.02727 -30.97497 -29.79436 -28.00937 -27.20337 -26.04858 -23.82237 -22.83476 -20.32187 -19.26066 -18.78425 -18.31551 -17.73206 -16.90160 -16.31089 -16.09929 -15.62136 -14.96292 -14.82796 -14.30162 -14.07450 -13.80754 -13.58819 -13.49375 -13.22705 -13.19587 -12.95216 -12.84150 -12.73170 -12.51729 -12.42981 -12.30748 -12.16155 -11.97138 -11.56741 -11.21313 -10.60746 -10.44307 -9.62121 -9.36728 -9.22213 -8.12282 -6.26766 0.16764 0.81700 1.09938 1.44579 1.46582 1.52737 1.70011 1.85433 2.37939 2.54697 3.15729 3.75185 3.84814 4.16272 4.33509 4.36101 4.52055 4.61114 4.66162 4.70524 4.76994 4.88140 4.89641 4.94013 4.98784 5.08406 5.17494 5.17844 5.42631 5.48966 5.59310 5.66342 5.77633 6.01386 6.23433 6.66494 6.86667 7.33344 7.47315 8.90061 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.005744 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.389555 B = 4873.777026 C = 5322.696240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.046 4.046 3 H 0.095 0.905 4 C 0.512 3.488 5 O -0.588 6.588 6 N -0.597 5.597 7 C 0.097 3.903 8 C 0.253 3.747 9 H 0.055 0.945 10 C -0.139 4.139 11 C -0.544 4.544 12 H 0.048 0.952 13 C 0.032 3.968 14 N -0.906 5.906 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.275 1.275 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.210 4.210 22 S 0.105 5.895 23 C -0.186 4.186 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.146 0.854 35 H 0.192 0.808 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 -6.681 -8.618 10.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 H 0.113 0.887 4 C 0.300 3.700 5 O -0.470 6.470 6 N -0.327 5.327 7 C -0.046 4.046 8 C 0.152 3.848 9 H 0.073 0.927 10 C -0.198 4.198 11 C -0.583 4.583 12 H 0.067 0.933 13 C -0.169 4.169 14 N -0.544 5.544 15 Si 0.776 3.224 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.201 1.201 19 C -0.116 4.116 20 C -0.174 4.174 21 C -0.345 4.345 22 S 0.368 5.632 23 C -0.321 4.321 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.209 0.791 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.096 -8.427 -9.475 12.680 hybrid contribution 0.658 2.165 1.499 2.714 sum 0.754 -6.262 -7.976 10.168 Atomic orbital electron populations 1.21755 0.90924 1.02494 1.03560 1.19888 0.98500 0.99417 0.89170 0.88681 1.20771 0.77964 0.86017 0.85247 1.90558 1.50435 1.19445 1.86562 1.48277 1.57758 1.18630 1.08049 1.21418 0.97890 0.97244 0.88082 1.19021 0.91942 0.76927 0.96887 0.92714 1.21951 0.97722 1.01799 0.98308 1.21533 0.94465 0.92928 1.49376 0.93335 1.25446 0.97289 0.99444 0.94770 1.69926 1.18498 1.16510 1.49484 0.85746 0.79675 0.78330 0.78690 1.20229 1.20686 1.20068 1.18579 1.01558 0.94574 0.96922 1.20245 1.00389 1.02162 0.94597 1.25817 1.07915 0.96193 1.04567 1.83854 1.47636 1.13443 1.18268 1.25437 1.07079 0.98975 1.00627 0.89919 0.92096 0.91924 0.92817 0.92688 0.90795 0.90604 0.94734 0.95261 0.92424 0.83640 0.79120 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 8.64 71.98 0.62 -3.50 16 2 C -0.05 -1.67 2.10 -12.28 -0.03 -1.70 16 3 H 0.10 3.70 6.98 -2.39 -0.02 3.69 16 4 C 0.51 21.39 6.83 87.66 0.60 21.99 16 5 O -0.59 -26.48 14.59 -3.01 -0.04 -26.52 16 6 N -0.60 -25.41 2.75 -826.80 -2.28 -27.69 16 7 C 0.10 3.72 9.24 127.77 1.18 4.90 16 8 C 0.25 11.54 1.91 44.25 0.08 11.62 16 9 H 0.06 2.57 4.31 -2.39 -0.01 2.56 16 10 C -0.14 -6.09 8.88 71.98 0.64 -5.45 16 11 C -0.54 -27.40 8.09 25.60 0.21 -27.19 16 12 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 13 C 0.03 1.59 5.30 84.66 0.45 2.03 16 14 N -0.91 -46.68 11.32 21.45 0.24 -46.44 16 15 Si 0.95 40.66 29.54 68.60 2.03 42.69 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 19 C -0.10 -3.45 4.46 -20.92 -0.09 -3.54 16 20 C -0.14 -4.19 9.92 21.22 0.21 -3.98 16 21 C -0.21 -5.08 11.23 66.72 0.75 -4.33 16 22 S 0.11 2.60 23.34 -56.49 -1.32 1.29 16 23 C -0.19 -5.80 9.14 66.72 0.61 -5.19 16 24 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.06 1.82 7.91 -2.39 -0.02 1.80 16 26 H 0.06 2.14 6.30 -2.39 -0.02 2.12 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 2.10 7.63 -2.39 -0.02 2.08 16 29 H 0.07 2.83 7.31 -2.39 -0.02 2.82 16 30 H 0.08 3.64 6.07 -2.38 -0.01 3.62 16 31 H 0.03 1.45 7.38 -2.39 -0.02 1.44 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.27 13.18 8.31 -92.70 -0.77 12.41 16 34 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 36 H 0.16 4.95 7.75 -2.91 -0.02 4.93 16 Total: -1.00 -56.68 306.92 4.93 -51.75 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.07 Total: 19.26 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 5.23 Total: -14.34 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.03 Total: -74.13 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.32 Total: 1.29 kcal Total: -56.68 4.93 -51.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158889788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.932 kcal (2) G-P(sol) polarization free energy of solvation -56.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds