Wall clock time and date at job start Mon Mar 30 2020 00:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47663 * 2 1 4 4 C 1.50707 * 109.47164 * 239.99877 * 2 1 3 5 5 H 1.07993 * 120.00383 * 239.99920 * 4 2 1 6 6 C 1.37883 * 119.99536 * 60.00373 * 4 2 1 7 7 N 1.31515 * 120.00015 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99656 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47328 * 59.99806 * 8 6 4 10 10 H 1.48503 * 109.46769 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47177 * 299.99541 * 8 6 4 12 12 N 1.46497 * 109.47416 * 120.00224 * 2 1 3 13 13 C 1.46504 * 119.99969 * 59.99713 * 12 2 1 14 14 C 1.34779 * 120.00488 * 239.99959 * 12 2 1 15 15 O 1.21280 * 119.99367 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00378 * 179.97438 * 14 12 2 17 17 H 1.09001 * 109.47358 * 59.99515 * 16 14 12 18 18 C 1.53006 * 109.46866 * 299.99920 * 16 14 12 19 19 C 1.50698 * 109.46911 * 180.02562 * 16 14 12 20 20 C 1.38429 * 122.53382 * 239.99706 * 19 16 14 21 21 C 1.33389 * 114.91642 * 179.97438 * 20 19 16 22 22 S 1.75886 * 109.59732 * 359.97438 * 21 20 19 23 23 C 1.33384 * 122.54072 * 59.71366 * 19 16 14 24 24 H 1.09000 * 109.47663 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47172 * 299.99985 * 1 2 3 26 26 H 1.08998 * 109.47538 * 59.99563 * 1 2 3 27 27 H 0.96996 * 119.99758 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.47072 * 270.00130 * 13 12 2 29 29 H 1.09003 * 109.47198 * 29.99945 * 13 12 2 30 30 H 1.08995 * 109.47279 * 150.00402 * 13 12 2 31 31 H 1.09001 * 109.47002 * 179.97438 * 18 16 14 32 32 H 1.08993 * 109.46955 * 300.00219 * 18 16 14 33 33 H 1.09000 * 109.47050 * 60.00048 * 18 16 14 34 34 H 1.07994 * 122.54149 * 0.02562 * 20 19 16 35 35 H 1.07997 * 125.20151 * 179.97438 * 21 20 19 36 36 H 1.08001 * 125.20574 * 0.02562 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8258 -0.4204 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0865 1.1253 1.8912 16 6 3.2951 -0.7460 3.3140 17 1 3.9004 -1.6027 3.0177 18 6 2.1047 -1.2263 4.1467 19 6 4.1319 0.2013 4.1345 20 6 5.4623 -0.0438 4.4280 21 6 6.0577 0.8956 5.1644 22 16 4.9088 2.1771 5.5270 23 6 3.6483 1.3421 4.6283 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7087 1.1614 -3.4843 28 1 0.7375 -2.1444 1.9993 29 1 1.5293 -2.5969 0.4707 30 1 2.4627 -2.5819 1.9862 31 1 2.4677 -1.7405 5.0367 32 1 1.4994 -0.3697 4.4430 33 1 1.4991 -1.9114 3.5534 34 1 5.9793 -0.9282 4.0860 35 1 7.0877 0.8729 5.4884 36 1 2.6370 1.6980 4.4976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158889910.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:56 Heat of formation + Delta-G solvation = 1.330448 kcal Electronic energy + Delta-G solvation = -18516.810190 eV Core-core repulsion = 15707.083979 eV Total energy + Delta-G solvation = -2809.726211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75452 -37.55992 -35.23272 -33.49853 -32.22280 -29.39206 -28.33286 -26.34189 -25.20939 -24.94725 -22.98533 -20.86174 -18.83148 -18.00804 -17.57706 -16.48461 -15.96673 -15.57009 -14.81408 -14.50778 -14.17228 -13.70977 -13.09700 -12.89838 -12.57561 -12.50825 -12.36533 -12.28155 -11.94771 -11.58641 -11.57181 -11.21748 -11.10046 -10.94621 -10.82909 -10.69895 -10.44868 -10.24484 -10.15444 -9.18025 -8.83389 -8.57093 -8.40996 -8.18750 -7.55211 -6.06242 -4.14271 1.22274 1.84155 2.15024 2.87396 3.28052 3.33400 3.34659 3.44800 4.04615 4.41216 4.91011 5.02815 5.22918 5.24885 5.38881 5.44377 5.49701 5.74634 5.80146 5.87180 5.90853 6.03584 6.16540 6.21340 6.42538 6.55239 6.70395 6.76770 6.84852 7.08209 7.45384 7.55845 7.73097 8.03455 8.21771 8.56503 8.84851 9.10639 9.52245 10.99004 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.029057 B = 0.004860 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.381767 B = 5759.675258 C = 5942.378947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.082 3.918 14 C 0.508 3.492 15 O -0.544 6.544 16 C -0.053 4.053 17 H 0.098 0.902 18 C -0.149 4.149 19 C -0.086 4.086 20 C -0.121 4.121 21 C -0.221 4.221 22 S 0.076 5.924 23 C -0.168 4.168 24 H 0.029 0.971 25 H 0.010 0.990 26 H 0.092 0.908 27 H 0.264 0.736 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.137 0.863 35 H 0.160 0.840 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -4.541 15.054 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.323 5.323 13 C -0.062 4.062 14 C 0.293 3.707 15 O -0.422 6.422 16 C -0.077 4.077 17 H 0.116 0.884 18 C -0.207 4.207 19 C -0.098 4.098 20 C -0.152 4.152 21 C -0.357 4.357 22 S 0.339 5.661 23 C -0.303 4.303 24 H 0.048 0.952 25 H 0.029 0.971 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.178 0.822 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.394 -2.425 15.597 16.384 hybrid contribution 0.284 -1.856 -1.783 2.589 sum 4.678 -4.281 13.814 15.200 Atomic orbital electron populations 1.22071 0.98250 0.99328 1.00708 1.18915 0.90801 0.94518 0.79963 0.91982 1.21287 1.31830 1.13006 0.90353 0.92336 1.24893 0.94945 0.94981 0.98945 1.69870 1.36297 1.22594 1.23836 0.86560 0.79234 0.79565 0.82041 1.20234 1.21174 1.20273 1.48178 1.49084 1.11513 1.23533 1.21747 0.98699 0.83570 1.02206 1.20232 0.79197 0.87192 0.84032 1.90658 1.57950 1.17060 1.76522 1.20008 0.96944 0.97277 0.93460 0.88406 1.22027 0.96858 1.02013 0.99775 1.18408 0.94123 0.96652 1.00639 1.20047 0.94057 1.00775 1.00280 1.25410 1.03330 0.98797 1.08120 1.84080 1.03191 1.25468 1.53403 1.25317 1.03060 0.98242 1.03725 0.95202 0.97112 0.88911 0.92648 0.93595 0.90263 0.92626 0.91942 0.92298 0.90475 0.84488 0.82201 0.82186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.97 37.15 0.33 -3.14 16 2 C 0.26 6.61 2.64 -69.09 -0.18 6.43 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -14.22 7.99 -34.43 -0.28 -14.49 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.59 -12.50 2.75 -175.26 -0.48 -12.98 16 13 C 0.08 1.33 7.80 59.85 0.47 1.80 16 14 C 0.51 10.49 6.98 -10.98 -0.08 10.41 16 15 O -0.54 -13.51 14.55 5.56 0.08 -13.43 16 16 C -0.05 -0.81 2.17 -92.92 -0.20 -1.01 16 17 H 0.10 1.33 7.29 -51.93 -0.38 0.95 16 18 C -0.15 -1.85 8.66 37.16 0.32 -1.52 16 19 C -0.09 -1.32 4.29 -106.25 -0.46 -1.78 16 20 C -0.12 -1.63 9.92 -41.21 -0.41 -2.04 16 21 C -0.22 -2.73 11.23 29.04 0.33 -2.40 16 22 S 0.08 0.98 23.34 -107.50 -2.51 -1.53 16 23 C -0.17 -2.58 9.25 29.04 0.27 -2.31 16 24 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 29 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 30 H 0.06 0.74 6.01 -51.93 -0.31 0.42 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.76 7.76 -51.93 -0.40 0.36 16 33 H 0.08 0.90 4.53 -51.93 -0.24 0.66 16 34 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.16 2.50 7.96 -52.49 -0.42 2.08 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -31.25 304.20 -7.45 -38.70 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.75 Total: 1.60 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 0.02 Total: -8.38 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.14 Total: -37.59 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.25 -7.45 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158889910.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.034 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds