Wall clock time and date at job start Mon Mar 30 2020 00:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47663 * 2 1 4 4 C 1.50707 * 109.47164 * 239.99877 * 2 1 3 5 5 H 1.07993 * 120.00383 * 239.99920 * 4 2 1 6 6 C 1.37883 * 119.99536 * 60.00373 * 4 2 1 7 7 N 1.31515 * 120.00015 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99656 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47328 * 59.99806 * 8 6 4 10 10 H 1.48503 * 109.46769 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47177 * 299.99541 * 8 6 4 12 12 N 1.46497 * 109.47416 * 120.00224 * 2 1 3 13 13 C 1.46504 * 119.99969 * 59.99713 * 12 2 1 14 14 C 1.34779 * 120.00488 * 239.99959 * 12 2 1 15 15 O 1.21280 * 119.99367 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00378 * 179.97438 * 14 12 2 17 17 H 1.09001 * 109.47358 * 59.99515 * 16 14 12 18 18 C 1.53006 * 109.46866 * 299.99920 * 16 14 12 19 19 C 1.50698 * 109.46911 * 180.02562 * 16 14 12 20 20 C 1.38429 * 122.53382 * 239.99706 * 19 16 14 21 21 C 1.33389 * 114.91642 * 179.97438 * 20 19 16 22 22 S 1.75886 * 109.59732 * 359.97438 * 21 20 19 23 23 C 1.33384 * 122.54072 * 59.71366 * 19 16 14 24 24 H 1.09000 * 109.47663 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47172 * 299.99985 * 1 2 3 26 26 H 1.08998 * 109.47538 * 59.99563 * 1 2 3 27 27 H 0.96996 * 119.99758 * 179.97438 * 7 6 4 28 28 H 1.09007 * 109.47072 * 270.00130 * 13 12 2 29 29 H 1.09003 * 109.47198 * 29.99945 * 13 12 2 30 30 H 1.08995 * 109.47279 * 150.00402 * 13 12 2 31 31 H 1.09001 * 109.47002 * 179.97438 * 18 16 14 32 32 H 1.08993 * 109.46955 * 300.00219 * 18 16 14 33 33 H 1.09000 * 109.47050 * 60.00048 * 18 16 14 34 34 H 1.07994 * 122.54149 * 0.02562 * 20 19 16 35 35 H 1.07997 * 125.20151 * 179.97438 * 21 20 19 36 36 H 1.08001 * 125.20574 * 0.02562 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5202 -4.0078 10 1 1.8258 -0.4204 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0865 1.1253 1.8912 16 6 3.2951 -0.7460 3.3140 17 1 3.9004 -1.6027 3.0177 18 6 2.1047 -1.2263 4.1467 19 6 4.1319 0.2013 4.1345 20 6 5.4623 -0.0438 4.4280 21 6 6.0577 0.8956 5.1644 22 16 4.9088 2.1771 5.5270 23 6 3.6483 1.3421 4.6283 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7087 1.1614 -3.4843 28 1 0.7375 -2.1444 1.9993 29 1 1.5293 -2.5969 0.4707 30 1 2.4627 -2.5819 1.9862 31 1 2.4677 -1.7405 5.0367 32 1 1.4994 -0.3697 4.4430 33 1 1.4991 -1.9114 3.5534 34 1 5.9793 -0.9282 4.0860 35 1 7.0877 0.8729 5.4884 36 1 2.6370 1.6980 4.4976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158889910.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:56 Heat of formation + Delta-G solvation = -17.411796 kcal Electronic energy + Delta-G solvation = -18517.622915 eV Core-core repulsion = 15707.083979 eV Total energy + Delta-G solvation = -2810.538935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21936 -38.82832 -37.00936 -35.13865 -33.77376 -31.12795 -29.50980 -27.75975 -27.29522 -26.07826 -24.37204 -22.43023 -20.26253 -19.29868 -18.71567 -18.43719 -17.52127 -17.17467 -16.42032 -16.02569 -15.59337 -14.97943 -14.64494 -14.35585 -13.98226 -13.77397 -13.65849 -13.55355 -13.33345 -13.07778 -12.94897 -12.80271 -12.75963 -12.67043 -12.32351 -12.19442 -12.11425 -12.05405 -11.55151 -11.19048 -10.58920 -10.38208 -9.62366 -9.30059 -9.23124 -8.13711 -6.30458 0.16500 0.80751 1.11596 1.41652 1.44165 1.51478 1.76582 1.87794 2.36857 2.59229 3.14114 3.73228 3.85749 4.13145 4.26747 4.34821 4.48884 4.59277 4.73034 4.74057 4.78418 4.88087 4.91591 4.92670 5.05923 5.08409 5.18369 5.30650 5.47850 5.52086 5.62721 5.63605 5.69117 6.06459 6.17893 6.77924 6.88734 7.34402 7.53404 8.90391 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.029057 B = 0.004860 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.381767 B = 5759.675258 C = 5942.378947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.262 3.738 3 H 0.005 0.995 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.260 1.260 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.599 5.599 13 C 0.076 3.924 14 C 0.497 3.503 15 O -0.598 6.598 16 C -0.042 4.042 17 H 0.123 0.877 18 C -0.143 4.143 19 C -0.097 4.097 20 C -0.138 4.138 21 C -0.211 4.211 22 S 0.089 5.911 23 C -0.199 4.199 24 H 0.047 0.953 25 H 0.017 0.983 26 H 0.065 0.935 27 H 0.264 0.736 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.192 0.808 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.422 -7.079 16.096 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.160 3.840 3 H 0.022 0.978 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.286 3.714 15 O -0.480 6.480 16 C -0.065 4.065 17 H 0.141 0.859 18 C -0.201 4.201 19 C -0.110 4.110 20 C -0.168 4.168 21 C -0.346 4.346 22 S 0.352 5.648 23 C -0.335 4.335 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.178 0.822 35 H 0.210 0.790 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.543 -5.008 16.669 18.267 hybrid contribution -0.050 -0.997 -2.057 2.286 sum 5.493 -6.004 14.613 16.726 Atomic orbital electron populations 1.21847 0.97212 1.00082 0.99718 1.18490 0.91541 0.92098 0.81908 0.97751 1.21567 1.31843 1.13085 0.91137 0.91954 1.25757 0.95084 0.95647 1.02092 1.70026 1.37370 1.23976 1.24425 0.85508 0.78348 0.79066 0.78082 1.18488 1.21045 1.20340 1.48175 1.49103 1.13358 1.22274 1.22042 1.01331 0.80647 1.02557 1.21269 0.78175 0.86826 0.85152 1.90626 1.59746 1.19678 1.77914 1.20015 0.98244 0.97264 0.91016 0.85926 1.22026 0.95653 1.01851 1.00522 1.18647 0.95148 0.96657 1.00504 1.20279 0.93353 1.02170 1.00971 1.25854 1.04404 0.97542 1.06784 1.83992 1.02644 1.25583 1.52609 1.25368 1.03382 0.99337 1.05377 0.93345 0.96352 0.91613 0.92713 0.91141 0.91472 0.88866 0.89054 0.93586 0.89374 0.82167 0.79044 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.34 8.97 71.98 0.65 -5.70 16 2 C 0.26 13.80 2.64 44.24 0.12 13.92 16 3 H 0.00 0.29 6.90 -2.39 -0.02 0.27 16 4 C -0.54 -29.38 7.99 25.60 0.20 -29.17 16 5 H 0.06 3.27 7.33 -2.91 -0.02 3.25 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.67 11.32 21.45 0.24 -53.43 16 8 Si 0.97 43.18 29.54 68.60 2.03 45.20 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.60 -25.18 2.75 -826.79 -2.28 -27.46 16 13 C 0.08 2.30 7.80 127.77 1.00 3.30 16 14 C 0.50 20.66 6.98 87.66 0.61 21.27 16 15 O -0.60 -31.06 14.55 -3.03 -0.04 -31.11 16 16 C -0.04 -1.20 2.17 -12.28 -0.03 -1.22 16 17 H 0.12 2.89 7.29 -2.39 -0.02 2.88 16 18 C -0.14 -3.16 8.66 71.98 0.62 -2.54 16 19 C -0.10 -2.86 4.29 -20.92 -0.09 -2.95 16 20 C -0.14 -3.37 9.92 21.22 0.21 -3.16 16 21 C -0.21 -4.64 11.23 66.72 0.75 -3.90 16 22 S 0.09 2.22 23.34 -56.49 -1.32 0.90 16 23 C -0.20 -6.16 9.25 66.72 0.62 -5.55 16 24 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.07 1.79 6.95 -2.38 -0.02 1.78 16 29 H 0.07 2.21 7.02 -2.39 -0.02 2.19 16 30 H 0.09 2.10 6.01 -2.39 -0.01 2.09 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.14 7.76 -2.39 -0.02 1.12 16 33 H 0.09 1.73 4.53 -2.39 -0.01 1.72 16 34 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.14 4.78 7.96 -2.91 -0.02 4.75 16 Total: -1.00 -71.14 304.20 4.81 -66.33 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 1.08 Total: 14.05 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.11 Total: -14.49 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -2.03 Total: -80.88 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.04 Total: -31.11 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.90 kcal Total: -71.14 4.81 -66.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158889910.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.916 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds