Wall clock time and date at job start Mon Mar 30 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47306 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47245 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00092 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00154 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99696 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99906 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47329 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47077 * 119.99763 * 14 12 10 17 17 H 1.48504 * 109.47058 * 239.99517 * 14 12 10 18 18 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 19 19 C 1.33386 * 125.20506 * 240.00294 * 18 2 1 20 20 C 1.38423 * 114.91934 * 179.97438 * 19 18 2 21 21 C 1.33382 * 114.92452 * 359.97438 * 20 19 18 22 22 S 1.75887 * 109.59293 * 359.75798 * 21 20 19 23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 26 26 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 27 27 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 28 28 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 29 29 H 1.09009 * 109.47378 * 299.99899 * 8 7 6 30 30 H 1.08993 * 109.47209 * 59.99808 * 8 7 6 31 31 H 1.08995 * 109.47215 * 299.99822 * 9 8 7 32 32 H 1.09001 * 109.47513 * 60.00266 * 9 8 7 33 33 H 0.97008 * 120.00088 * 180.02562 * 13 12 10 34 34 H 1.07993 * 122.53981 * 359.97438 * 19 18 2 35 35 H 1.08001 * 122.53676 * 180.02562 * 20 19 18 36 36 H 1.08002 * 125.21075 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.6990 -0.2100 -4.8998 9 6 2.2137 -0.9280 -6.1490 10 6 1.7160 -0.2145 -7.3795 11 1 1.0943 0.6631 -7.2805 12 6 2.0533 -0.6827 -8.6318 13 7 2.8099 -1.7516 -8.7523 14 14 1.4358 0.2014 -10.1570 15 1 0.6088 1.3668 -9.7530 16 1 2.5935 0.6701 -10.9604 17 1 0.6136 -0.7302 -10.9704 18 6 2.0323 -0.7103 1.2306 19 6 2.8024 -0.1644 2.1730 20 6 3.1394 -1.0122 3.2141 21 6 2.6426 -2.2462 3.1174 22 16 1.6856 -2.3833 1.6481 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.1537 0.5418 -2.5435 27 1 3.2948 -0.9335 -3.6463 28 1 1.8419 -1.9618 -3.6548 29 1 0.6089 -0.2108 -4.9040 30 1 2.0614 0.8179 -4.8959 31 1 3.3036 -0.9276 -6.1452 32 1 1.8508 -1.9558 -6.1528 33 1 3.0476 -2.0808 -9.6333 34 1 3.1375 0.8612 2.1273 35 1 3.7571 -0.6979 4.0424 36 1 2.8007 -3.0390 3.8336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172411866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:41 Heat of formation + Delta-G solvation = -26.676921 kcal Electronic energy + Delta-G solvation = -17193.792135 eV Core-core repulsion = 14382.851433 eV Total energy + Delta-G solvation = -2810.940701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85469 -37.79360 -35.43490 -34.12825 -33.22349 -31.11872 -28.72758 -26.82156 -24.95297 -23.65225 -22.48183 -20.72213 -19.89871 -19.47626 -17.49656 -16.60222 -16.39171 -15.72036 -15.45150 -15.11489 -14.45983 -14.27721 -13.78060 -13.56390 -13.08767 -12.82243 -12.41459 -12.36471 -12.28769 -11.96625 -11.81615 -11.71662 -11.57307 -10.93224 -10.74981 -10.69766 -10.58173 -9.88759 -9.86718 -9.40022 -9.12376 -8.80399 -8.73257 -8.40727 -8.38898 -6.03215 -4.06372 0.91957 1.60745 2.00386 2.62752 2.74417 3.28931 3.36217 3.38813 3.42305 4.33749 4.43091 4.69824 4.82518 4.95811 5.06653 5.32682 5.34170 5.41162 5.47764 5.53390 5.71990 5.76199 5.83100 5.99242 6.14593 6.18689 6.37626 6.46386 6.58045 6.81162 6.98554 7.62276 7.67292 7.74503 7.95542 8.34024 8.38027 9.00568 9.57972 11.08112 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.051300 B = 0.002965 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.672911 B = 9441.502214 C = 9654.247466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 H 0.113 0.887 4 C 0.508 3.492 5 O -0.530 6.530 6 N -0.723 5.723 7 C 0.117 3.883 8 C -0.120 4.120 9 C 0.023 3.977 10 C -0.522 4.522 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.154 4.154 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.227 4.227 22 S 0.141 5.859 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.398 0.602 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.996 4.007 23.386 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 H 0.131 0.869 4 C 0.292 3.708 5 O -0.406 6.406 6 N -0.374 5.374 7 C -0.006 4.006 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.272 4.272 19 C -0.173 4.173 20 C -0.168 4.168 21 C -0.363 4.363 22 S 0.406 5.594 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.232 0.768 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.237 1.975 22.652 23.129 hybrid contribution 0.430 1.925 -0.307 1.996 sum -3.807 3.900 22.345 23.000 Atomic orbital electron populations 1.21854 0.91731 1.03288 1.03284 1.19857 0.97619 0.99903 0.89276 0.86948 1.20389 0.80865 0.85005 0.84570 1.90741 1.37298 1.25983 1.86567 1.46171 1.53339 1.32032 1.05904 1.21655 0.99231 0.96592 0.83119 1.21886 1.00200 0.99477 0.94277 1.19033 0.96664 0.95710 0.90020 1.21239 1.31573 1.12311 0.90912 0.92594 1.25037 0.95173 0.95064 0.99231 1.69977 1.36724 1.23060 1.23489 0.86527 0.78625 0.79674 0.83105 1.19756 1.20988 1.20990 1.23936 1.05593 0.97712 0.99986 1.20043 1.00836 1.01515 0.94887 1.20052 1.03123 0.93185 1.00418 1.25695 1.06641 1.01495 1.02480 1.84343 1.49190 1.09851 1.16021 0.91797 0.90970 0.91065 0.76812 0.91760 0.91752 0.92723 0.92728 0.96284 0.96276 0.92966 0.84555 0.84604 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.01 37.16 0.33 -0.88 16 2 C -0.04 -0.46 3.10 -92.92 -0.29 -0.75 16 3 H 0.11 0.94 8.09 -51.92 -0.42 0.52 16 4 C 0.51 7.37 7.12 -10.98 -0.08 7.29 16 5 O -0.53 -9.86 15.27 5.55 0.08 -9.78 16 6 N -0.72 -10.05 5.45 -60.30 -0.33 -10.38 16 7 C 0.12 2.04 5.67 -4.04 -0.02 2.01 16 8 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 14 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 C -0.15 -1.81 4.60 -36.00 -0.17 -1.98 16 19 C -0.14 -1.51 10.01 -41.21 -0.41 -1.92 16 20 C -0.14 -1.36 10.18 -41.21 -0.42 -1.78 16 21 C -0.23 -2.33 11.23 29.04 0.33 -2.00 16 22 S 0.14 1.69 22.19 -107.50 -2.39 -0.69 16 23 H 0.06 0.61 7.99 -51.93 -0.41 0.19 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.51 7.57 -51.93 -0.39 0.11 16 26 H 0.40 4.32 7.90 -40.82 -0.32 4.00 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -32.79 321.56 -8.80 -41.60 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.32 Total: -0.57 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.42 Total: -15.34 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.41 Total: -36.45 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.39 Total: -0.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.79 -8.80 -41.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172411866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.919 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds