Wall clock time and date at job start Mon Mar 30 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 5 5 O 1.21283 * 119.99803 * 239.99993 * 4 2 1 6 6 N 1.34777 * 119.99675 * 60.27868 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47306 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47245 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00092 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00154 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99696 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99906 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47329 * 359.97438 * 14 12 10 16 16 H 1.48507 * 109.47077 * 119.99763 * 14 12 10 17 17 H 1.48504 * 109.47058 * 239.99517 * 14 12 10 18 18 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 19 19 C 1.33386 * 125.20506 * 240.00294 * 18 2 1 20 20 C 1.38423 * 114.91934 * 179.97438 * 19 18 2 21 21 C 1.33382 * 114.92452 * 359.97438 * 20 19 18 22 22 S 1.75887 * 109.59293 * 359.75798 * 21 20 19 23 23 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 25 25 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 26 26 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 27 27 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 28 28 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 29 29 H 1.09009 * 109.47378 * 299.99899 * 8 7 6 30 30 H 1.08993 * 109.47209 * 59.99808 * 8 7 6 31 31 H 1.08995 * 109.47215 * 299.99822 * 9 8 7 32 32 H 1.09001 * 109.47513 * 60.00266 * 9 8 7 33 33 H 0.97008 * 120.00088 * 180.02562 * 13 12 10 34 34 H 1.07993 * 122.53981 * 359.97438 * 19 18 2 35 35 H 1.08001 * 122.53676 * 180.02562 * 20 19 18 36 36 H 1.08002 * 125.21075 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7114 -0.2468 -2.4545 7 6 2.2048 -0.9340 -3.6505 8 6 1.6990 -0.2100 -4.8998 9 6 2.2137 -0.9280 -6.1490 10 6 1.7160 -0.2145 -7.3795 11 1 1.0943 0.6631 -7.2805 12 6 2.0533 -0.6827 -8.6318 13 7 2.8099 -1.7516 -8.7523 14 14 1.4358 0.2014 -10.1570 15 1 0.6088 1.3668 -9.7530 16 1 2.5935 0.6701 -10.9604 17 1 0.6136 -0.7302 -10.9704 18 6 2.0323 -0.7103 1.2306 19 6 2.8024 -0.1644 2.1730 20 6 3.1394 -1.0122 3.2141 21 6 2.6426 -2.2462 3.1174 22 16 1.6856 -2.3833 1.6481 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.1537 0.5418 -2.5435 27 1 3.2948 -0.9335 -3.6463 28 1 1.8419 -1.9618 -3.6548 29 1 0.6089 -0.2108 -4.9040 30 1 2.0614 0.8179 -4.8959 31 1 3.3036 -0.9276 -6.1452 32 1 1.8508 -1.9558 -6.1528 33 1 3.0476 -2.0808 -9.6333 34 1 3.1375 0.8612 2.1273 35 1 3.7571 -0.6979 4.0424 36 1 2.8007 -3.0390 3.8336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172411866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:41 Heat of formation + Delta-G solvation = -47.205930 kcal Electronic energy + Delta-G solvation = -17194.682339 eV Core-core repulsion = 14382.851433 eV Total energy + Delta-G solvation = -2811.830906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99379 -38.63441 -36.96161 -35.29284 -34.83985 -32.86189 -29.57952 -28.53535 -25.93086 -25.05311 -23.69634 -22.31752 -21.15599 -20.25179 -18.70372 -18.27755 -17.61083 -16.77431 -16.71494 -16.45631 -16.20439 -15.50954 -14.97757 -14.50163 -14.27000 -13.96790 -13.74048 -13.54739 -13.53743 -13.19589 -13.09450 -12.77969 -12.60522 -12.53415 -12.42924 -12.32704 -11.68116 -11.59588 -11.50249 -11.22152 -10.79759 -10.56729 -10.09843 -9.55961 -9.29101 -8.20004 -6.31579 0.10878 0.78989 1.20166 1.41842 1.41930 1.55243 1.61194 1.83520 2.27902 2.43028 3.13968 3.51898 3.79849 4.06167 4.17826 4.20948 4.25491 4.32943 4.54701 4.66097 4.71962 4.82785 4.85825 4.93980 4.99720 5.16741 5.19355 5.24002 5.40414 5.43437 5.52765 5.63452 5.70111 5.83854 6.21639 6.57055 6.86471 7.24784 7.38287 8.92400 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.051300 B = 0.002965 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.672911 B = 9441.502214 C = 9654.247466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.034 4.034 3 H 0.144 0.856 4 C 0.504 3.496 5 O -0.576 6.576 6 N -0.711 5.711 7 C 0.131 3.869 8 C -0.101 4.101 9 C 0.023 3.977 10 C -0.539 4.539 11 H 0.068 0.932 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.257 1.257 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.171 4.171 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.225 4.225 22 S 0.081 5.919 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.416 0.584 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H -0.009 1.009 32 H -0.010 1.010 33 H 0.263 0.737 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 6.583 24.360 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 H 0.161 0.839 4 C 0.291 3.709 5 O -0.455 6.455 6 N -0.364 5.364 7 C 0.007 3.993 8 C -0.139 4.139 9 C -0.015 4.015 10 C -0.577 4.577 11 H 0.086 0.914 12 C -0.202 4.202 13 N -0.577 5.577 14 Si 0.792 3.208 15 H -0.181 1.181 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.289 4.289 19 C -0.172 4.172 20 C -0.173 4.173 21 C -0.360 4.360 22 S 0.345 5.655 23 H 0.066 0.934 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.254 0.746 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.178 0.822 35 H 0.181 0.819 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.195 4.593 23.648 24.643 hybrid contribution 0.774 1.093 -0.538 1.443 sum -4.421 5.686 23.110 24.206 Atomic orbital electron populations 1.21878 0.90017 1.02828 1.05102 1.19908 0.98895 1.00450 0.86413 0.83872 1.21170 0.79818 0.84436 0.85509 1.90725 1.39402 1.28135 1.87239 1.45928 1.53347 1.32337 1.04752 1.21204 0.98125 0.95897 0.84117 1.21590 1.00815 0.99384 0.92073 1.18950 0.94914 0.94878 0.92752 1.21716 1.31466 1.12677 0.91873 0.91411 1.26044 0.95301 0.95828 1.03053 1.70124 1.38220 1.24874 1.24439 0.85356 0.78165 0.78734 0.78517 1.18060 1.20607 1.20631 1.24131 1.06751 0.97048 1.00960 1.20431 0.99635 1.02700 0.94448 1.20433 1.02973 0.92860 1.01003 1.25976 1.05939 1.02461 1.01661 1.84534 1.50881 1.11833 1.18210 0.93438 0.88984 0.89386 0.74627 0.93464 0.93539 0.91233 0.91203 0.99100 0.99117 0.92831 0.82169 0.81941 0.80151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.01 71.98 0.65 -1.40 16 2 C -0.03 -0.65 3.10 -12.29 -0.04 -0.68 16 3 H 0.14 1.85 8.09 -2.38 -0.02 1.83 16 4 C 0.50 14.24 7.12 87.66 0.62 14.87 16 5 O -0.58 -21.85 15.27 -3.04 -0.05 -21.89 16 6 N -0.71 -18.85 5.45 -463.07 -2.52 -21.37 16 7 C 0.13 4.60 5.67 86.38 0.49 5.09 16 8 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 11 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 12 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 13 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 14 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 15 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 C -0.17 -3.79 4.60 24.59 0.11 -3.67 16 19 C -0.14 -2.66 10.01 21.22 0.21 -2.45 16 20 C -0.14 -2.51 10.18 21.21 0.22 -2.29 16 21 C -0.22 -4.34 11.23 66.72 0.75 -3.59 16 22 S 0.08 1.96 22.19 -56.49 -1.25 0.71 16 23 H 0.05 0.86 7.99 -2.39 -0.02 0.84 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 0.97 7.57 -2.38 -0.02 0.95 16 26 H 0.42 7.91 7.90 -92.71 -0.73 7.18 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 32 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 33 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -72.83 321.56 2.84 -69.99 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.33 Total: 9.98 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.02 Total: -26.01 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.24 Total: -78.46 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.25 Total: 0.71 kcal Total: -72.83 2.84 -69.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172411866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.784 kcal (2) G-P(sol) polarization free energy of solvation -72.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds