Wall clock time and date at job start Mon Mar 30 2020 00:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47440 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00699 * 2 1 3 5 5 O 1.21280 * 120.00496 * 119.99853 * 4 2 1 6 6 N 1.34783 * 119.99924 * 299.99736 * 4 2 1 7 7 C 1.46496 * 120.00288 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47150 * 179.97438 * 7 6 4 9 9 C 1.52991 * 109.47079 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47398 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99486 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00553 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99610 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00239 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47348 * 90.00202 * 14 12 10 16 16 H 1.48509 * 109.47100 * 210.00468 * 14 12 10 17 17 H 1.48501 * 109.47193 * 329.99870 * 14 12 10 18 18 C 1.50707 * 109.46999 * 240.00150 * 2 1 3 19 19 C 1.33388 * 125.19940 * 120.00096 * 18 2 1 20 20 C 1.38433 * 114.91766 * 179.97438 * 19 18 2 21 21 C 1.33389 * 114.92022 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20222 * 299.97622 * 18 2 1 23 23 H 1.09002 * 109.47275 * 59.99669 * 1 2 3 24 24 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47030 * 299.99413 * 1 2 3 26 26 H 0.97007 * 119.99248 * 359.97438 * 6 4 2 27 27 H 1.08998 * 109.46977 * 300.00122 * 7 6 4 28 28 H 1.09004 * 109.47051 * 59.99952 * 7 6 4 29 29 H 1.09000 * 109.46999 * 300.00071 * 8 7 6 30 30 H 1.08998 * 109.46604 * 59.99895 * 8 7 6 31 31 H 1.09000 * 109.47289 * 299.99924 * 9 8 7 32 32 H 1.09004 * 109.47061 * 60.00264 * 9 8 7 33 33 H 0.96999 * 119.99991 * 179.97438 * 13 12 10 34 34 H 1.08000 * 122.54563 * 359.95533 * 19 18 2 35 35 H 1.07998 * 122.53579 * 180.02562 * 20 19 18 36 36 H 1.07995 * 125.20209 * 180.26467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4546 7 6 2.1956 -0.9405 3.6507 8 6 1.6860 -0.2190 4.9000 9 6 2.1960 -0.9403 6.1491 10 6 1.6936 -0.2301 7.3797 11 1 1.0723 0.6478 7.2806 12 6 2.0262 -0.7015 8.6319 13 7 2.7823 -1.7708 8.7524 14 14 1.4029 0.1784 10.1571 15 1 0.0947 -0.3967 10.5606 16 1 2.3807 0.0074 11.2617 17 1 1.2379 1.6244 9.8618 18 6 2.0323 -0.7104 -1.2305 19 6 2.8024 -0.1645 -2.1730 20 6 3.1404 -1.0127 -3.2135 21 6 2.6442 -2.2470 -3.1163 22 16 1.6932 -2.3861 -1.6432 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.1494 0.5388 2.5436 27 1 1.8327 -1.9683 3.6508 28 1 3.2856 -0.9401 3.6505 29 1 2.0493 0.8087 4.8996 30 1 0.5960 -0.2191 4.9003 31 1 1.8323 -1.9679 6.1492 32 1 3.2860 -0.9407 6.1489 33 1 3.0166 -2.1023 9.6334 34 1 3.1367 0.8614 -2.1279 35 1 3.7589 -0.6987 -4.0413 36 1 2.8061 -3.0411 -3.8302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172411871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:45 Heat of formation + Delta-G solvation = -26.644509 kcal Electronic energy + Delta-G solvation = -17194.730569 eV Core-core repulsion = 14383.791273 eV Total energy + Delta-G solvation = -2810.939296 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85564 -37.79176 -35.43489 -34.12745 -33.22233 -31.11807 -28.72667 -26.81982 -24.95224 -23.65123 -22.48143 -20.72156 -19.89816 -19.47593 -17.49610 -16.60101 -16.38960 -15.71922 -15.45218 -15.11404 -14.46349 -14.27808 -13.78015 -13.56270 -13.08683 -12.82097 -12.41357 -12.36261 -12.28095 -11.96800 -11.81660 -11.71641 -11.57268 -10.91528 -10.74631 -10.69710 -10.60528 -9.88388 -9.86675 -9.39872 -9.13646 -8.80394 -8.73251 -8.40498 -8.38465 -6.02994 -4.06275 0.92003 1.60883 2.00522 2.62855 2.74261 3.29862 3.36071 3.38100 3.42117 4.33795 4.43147 4.69863 4.82609 4.95930 5.06669 5.32788 5.34244 5.41207 5.47847 5.53488 5.71962 5.76202 5.83190 5.99288 6.14572 6.18749 6.37694 6.46402 6.58041 6.81127 6.98579 7.62070 7.67217 7.74563 7.95637 8.33997 8.38025 9.00433 9.58025 11.08324 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.051303 B = 0.002966 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.643920 B = 9437.007934 C = 9651.058920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 H 0.113 0.887 4 C 0.507 3.493 5 O -0.530 6.530 6 N -0.724 5.724 7 C 0.117 3.883 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.154 4.154 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.227 4.227 22 S 0.142 5.858 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.398 0.602 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 4.037 -23.365 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.066 4.066 3 H 0.130 0.870 4 C 0.292 3.708 5 O -0.406 6.406 6 N -0.374 5.374 7 C -0.006 4.006 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.273 4.273 19 C -0.173 4.173 20 C -0.168 4.168 21 C -0.363 4.363 22 S 0.407 5.593 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.232 0.768 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.141 2.000 -22.623 23.086 hybrid contribution 0.407 1.931 0.298 1.996 sum -3.735 3.931 -22.325 22.974 Atomic orbital electron populations 1.21854 0.91725 1.03292 1.03278 1.19855 0.97620 0.99905 0.89268 0.86954 1.20391 0.80860 0.85011 0.84574 1.90740 1.37324 1.25960 1.86566 1.46175 1.53355 1.32017 1.05901 1.21657 0.99279 0.96543 0.83116 1.21886 1.00180 0.99497 0.94279 1.19027 0.96674 0.95686 0.90003 1.21201 1.31633 1.12346 0.90928 0.92648 1.25033 0.95154 0.95075 0.99217 1.69967 1.36711 1.22990 1.23600 0.86579 0.78596 0.80001 0.82720 1.20649 1.21194 1.19892 1.23939 1.05626 0.97692 1.00010 1.20046 1.00778 1.01523 0.94929 1.20055 1.03088 0.93214 1.00429 1.25700 1.06721 1.01478 1.02437 1.84347 1.49637 1.09565 1.15778 0.90970 0.91794 0.91068 0.76813 0.91744 0.91769 0.92727 0.92724 0.96287 0.96281 0.92907 0.84556 0.84608 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.01 37.15 0.33 -0.88 16 2 C -0.04 -0.46 3.10 -92.92 -0.29 -0.75 16 3 H 0.11 0.94 8.08 -51.93 -0.42 0.52 16 4 C 0.51 7.37 7.12 -10.98 -0.08 7.29 16 5 O -0.53 -9.86 15.25 5.56 0.08 -9.78 16 6 N -0.72 -10.05 5.45 -60.29 -0.33 -10.38 16 7 C 0.12 2.04 5.67 -4.04 -0.02 2.01 16 8 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 11 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 14 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.15 -1.82 4.60 -36.00 -0.17 -1.98 16 19 C -0.14 -1.51 10.01 -41.20 -0.41 -1.92 16 20 C -0.14 -1.36 10.18 -41.20 -0.42 -1.78 16 21 C -0.23 -2.33 11.23 29.04 0.33 -2.00 16 22 S 0.14 1.70 22.18 -107.50 -2.38 -0.68 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.61 8.00 -51.93 -0.42 0.19 16 25 H 0.07 0.51 7.57 -51.93 -0.39 0.11 16 26 H 0.40 4.32 7.89 -40.82 -0.32 4.00 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -32.77 321.53 -8.80 -41.57 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.32 Total: -0.54 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.42 Total: -15.36 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.41 Total: -36.47 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.38 Total: -0.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.77 -8.80 -41.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172411871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.929 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds