Wall clock time and date at job start Mon Mar 30 2020 00:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47440 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00699 * 2 1 3 5 5 O 1.21280 * 120.00496 * 119.99853 * 4 2 1 6 6 N 1.34783 * 119.99924 * 299.99736 * 4 2 1 7 7 C 1.46496 * 120.00288 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47150 * 179.97438 * 7 6 4 9 9 C 1.52991 * 109.47079 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47398 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99486 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00553 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99610 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00239 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47348 * 90.00202 * 14 12 10 16 16 H 1.48509 * 109.47100 * 210.00468 * 14 12 10 17 17 H 1.48501 * 109.47193 * 329.99870 * 14 12 10 18 18 C 1.50707 * 109.46999 * 240.00150 * 2 1 3 19 19 C 1.33388 * 125.19940 * 120.00096 * 18 2 1 20 20 C 1.38433 * 114.91766 * 179.97438 * 19 18 2 21 21 C 1.33389 * 114.92022 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20222 * 299.97622 * 18 2 1 23 23 H 1.09002 * 109.47275 * 59.99669 * 1 2 3 24 24 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47030 * 299.99413 * 1 2 3 26 26 H 0.97007 * 119.99248 * 359.97438 * 6 4 2 27 27 H 1.08998 * 109.46977 * 300.00122 * 7 6 4 28 28 H 1.09004 * 109.47051 * 59.99952 * 7 6 4 29 29 H 1.09000 * 109.46999 * 300.00071 * 8 7 6 30 30 H 1.08998 * 109.46604 * 59.99895 * 8 7 6 31 31 H 1.09000 * 109.47289 * 299.99924 * 9 8 7 32 32 H 1.09004 * 109.47061 * 60.00264 * 9 8 7 33 33 H 0.96999 * 119.99991 * 179.97438 * 13 12 10 34 34 H 1.08000 * 122.54563 * 359.95533 * 19 18 2 35 35 H 1.07998 * 122.53579 * 180.02562 * 20 19 18 36 36 H 1.07995 * 125.20209 * 180.26467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4546 7 6 2.1956 -0.9405 3.6507 8 6 1.6860 -0.2190 4.9000 9 6 2.1960 -0.9403 6.1491 10 6 1.6936 -0.2301 7.3797 11 1 1.0723 0.6478 7.2806 12 6 2.0262 -0.7015 8.6319 13 7 2.7823 -1.7708 8.7524 14 14 1.4029 0.1784 10.1571 15 1 0.0947 -0.3967 10.5606 16 1 2.3807 0.0074 11.2617 17 1 1.2379 1.6244 9.8618 18 6 2.0323 -0.7104 -1.2305 19 6 2.8024 -0.1645 -2.1730 20 6 3.1404 -1.0127 -3.2135 21 6 2.6442 -2.2470 -3.1163 22 16 1.6932 -2.3861 -1.6432 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.1494 0.5388 2.5436 27 1 1.8327 -1.9683 3.6508 28 1 3.2856 -0.9401 3.6505 29 1 2.0493 0.8087 4.8996 30 1 0.5960 -0.2191 4.9003 31 1 1.8323 -1.9679 6.1492 32 1 3.2860 -0.9407 6.1489 33 1 3.0166 -2.1023 9.6334 34 1 3.1367 0.8614 -2.1279 35 1 3.7589 -0.6987 -4.0413 36 1 2.8061 -3.0411 -3.8302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172411871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:44 Heat of formation + Delta-G solvation = -47.154180 kcal Electronic energy + Delta-G solvation = -17195.619935 eV Core-core repulsion = 14383.791273 eV Total energy + Delta-G solvation = -2811.828662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99473 -38.63297 -36.96168 -35.29277 -34.83863 -32.86149 -29.57931 -28.53367 -25.93023 -25.05264 -23.69610 -22.31726 -21.15574 -20.25201 -18.70232 -18.27578 -17.60971 -16.77498 -16.71444 -16.45898 -16.20537 -15.51046 -14.97506 -14.50262 -14.26233 -13.96732 -13.74524 -13.54675 -13.53640 -13.19595 -13.09178 -12.75398 -12.60375 -12.53427 -12.43079 -12.35458 -11.67628 -11.59372 -11.50115 -11.23865 -10.79834 -10.55886 -10.09842 -9.55972 -9.29005 -8.19840 -6.31562 0.10875 0.79042 1.20233 1.41788 1.43191 1.54140 1.61155 1.83468 2.27963 2.43126 3.14032 3.51898 3.79845 4.06199 4.17790 4.20951 4.25532 4.32946 4.54660 4.66129 4.71952 4.82837 4.85877 4.93944 4.99696 5.16700 5.19376 5.24015 5.40421 5.43376 5.52599 5.63476 5.70103 5.83806 6.21613 6.56973 6.86308 7.24728 7.38307 8.92394 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.051303 B = 0.002966 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.643920 B = 9437.007934 C = 9651.058920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.034 4.034 3 H 0.144 0.856 4 C 0.504 3.496 5 O -0.576 6.576 6 N -0.711 5.711 7 C 0.131 3.869 8 C -0.101 4.101 9 C 0.023 3.977 10 C -0.541 4.541 11 H 0.068 0.932 12 C -0.004 4.004 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.259 1.259 18 C -0.171 4.171 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.225 4.225 22 S 0.081 5.919 23 H 0.091 0.909 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.416 0.584 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.069 0.931 31 H -0.010 1.010 32 H -0.009 1.009 33 H 0.263 0.737 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 6.624 -24.339 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 H 0.161 0.839 4 C 0.291 3.709 5 O -0.455 6.455 6 N -0.364 5.364 7 C 0.007 3.993 8 C -0.139 4.139 9 C -0.015 4.015 10 C -0.578 4.578 11 H 0.086 0.914 12 C -0.202 4.202 13 N -0.577 5.577 14 Si 0.792 3.208 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.183 1.183 18 C -0.289 4.289 19 C -0.172 4.172 20 C -0.173 4.173 21 C -0.360 4.360 22 S 0.346 5.654 23 H 0.110 0.890 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.254 0.746 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.178 0.822 35 H 0.181 0.819 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.105 4.629 -23.619 24.604 hybrid contribution 0.751 1.096 0.527 1.430 sum -4.354 5.726 -23.092 24.186 Atomic orbital electron populations 1.21878 0.90014 1.02829 1.05096 1.19906 0.98892 1.00455 0.86405 0.83874 1.21173 0.79812 0.84445 0.85513 1.90725 1.39422 1.28110 1.87237 1.45931 1.53368 1.32320 1.04749 1.21205 0.98162 0.95858 0.84115 1.21590 1.00814 0.99385 0.92072 1.18945 0.94913 0.94863 0.92741 1.21690 1.31531 1.12740 0.91888 0.91403 1.26042 0.95286 0.95822 1.03049 1.70118 1.38236 1.24807 1.24502 0.85405 0.77987 0.79319 0.78075 1.19813 1.21106 1.18297 1.24133 1.06784 0.97010 1.00984 1.20435 0.99575 1.02711 0.94486 1.20437 1.02936 0.92888 1.01013 1.25978 1.06019 1.02445 1.01605 1.84541 1.51334 1.11565 1.17985 0.88983 0.93441 0.89390 0.74628 0.93531 0.93477 0.91208 0.91224 0.99135 0.99100 0.92825 0.82164 0.81943 0.80158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.01 71.98 0.65 -1.40 16 2 C -0.03 -0.64 3.10 -12.29 -0.04 -0.68 16 3 H 0.14 1.85 8.08 -2.39 -0.02 1.83 16 4 C 0.50 14.24 7.12 87.66 0.62 14.86 16 5 O -0.58 -21.84 15.25 -3.03 -0.05 -21.88 16 6 N -0.71 -18.85 5.45 -463.05 -2.52 -21.38 16 7 C 0.13 4.60 5.67 86.38 0.49 5.09 16 8 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.54 -30.06 9.11 25.60 0.23 -29.82 16 11 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 13 N -0.94 -57.42 13.29 21.45 0.28 -57.13 16 14 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 18 C -0.17 -3.79 4.60 24.59 0.11 -3.68 16 19 C -0.14 -2.66 10.01 21.22 0.21 -2.44 16 20 C -0.14 -2.51 10.18 21.22 0.22 -2.29 16 21 C -0.22 -4.34 11.23 66.72 0.75 -3.60 16 22 S 0.08 1.97 22.18 -56.49 -1.25 0.72 16 23 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.05 0.86 8.00 -2.39 -0.02 0.84 16 25 H 0.09 0.97 7.57 -2.38 -0.02 0.95 16 26 H 0.42 7.92 7.89 -92.70 -0.73 7.18 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H -0.01 -0.54 8.14 -2.38 -0.02 -0.55 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -72.81 321.53 2.84 -69.97 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.33 Total: 10.10 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 4.02 Total: -26.07 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -2.24 Total: -78.51 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.25 Total: 0.72 kcal Total: -72.81 2.84 -69.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172411871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.815 kcal (2) G-P(sol) polarization free energy of solvation -72.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds