Wall clock time and date at job start Mon Mar 30 2020 00:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47150 * 239.99491 * 2 1 3 5 5 C 1.38233 * 119.99956 * 291.46326 * 4 2 1 6 6 C 1.38234 * 120.00116 * 179.97438 * 5 4 2 7 7 C 1.38239 * 120.00112 * 0.09184 * 6 5 4 8 8 S 1.76191 * 120.00194 * 179.97438 * 7 6 5 9 9 C 1.81401 * 103.00171 * 269.86457 * 8 7 6 10 10 O 1.42098 * 103.00528 * 23.71867 * 8 7 6 11 11 C 1.38236 * 119.99927 * 359.84172 * 7 6 5 12 12 C 1.38231 * 120.00161 * 111.44094 * 4 2 1 13 13 N 1.46504 * 109.47009 * 119.99287 * 2 1 3 14 14 C 1.46495 * 119.99925 * 55.61026 * 13 2 1 15 15 C 1.36941 * 120.00127 * 235.60961 * 13 2 1 16 16 H 1.08000 * 119.99610 * 323.69512 * 15 13 2 17 17 C 1.38806 * 119.99939 * 143.69310 * 15 13 2 18 18 N 1.31614 * 120.00266 * 157.31811 * 17 15 13 19 19 Si 1.86800 * 120.00048 * 337.31543 * 17 15 13 20 20 H 1.48501 * 109.47262 * 95.25271 * 19 17 15 21 21 H 1.48498 * 109.47234 * 215.24715 * 19 17 15 22 22 H 1.48494 * 109.47376 * 335.25160 * 19 17 15 23 23 H 1.09003 * 109.47014 * 300.00802 * 1 2 3 24 24 H 1.08993 * 109.46951 * 60.00422 * 1 2 3 25 25 H 1.09002 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00205 * 359.69860 * 5 4 2 27 27 H 1.08004 * 120.00536 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47154 * 60.00109 * 9 8 7 29 29 H 1.09002 * 109.47266 * 180.02562 * 9 8 7 30 30 H 1.09008 * 109.46977 * 299.99942 * 9 8 7 31 31 H 1.07997 * 120.00240 * 180.11327 * 11 7 6 32 32 H 1.08004 * 120.00053 * 359.97438 * 12 4 2 33 33 H 1.09007 * 109.47183 * 86.62883 * 14 13 2 34 34 H 1.09003 * 109.47218 * 206.63076 * 14 13 2 35 35 H 1.08997 * 109.47463 * 326.63207 * 14 13 2 36 36 H 0.97001 * 120.00519 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 1.8498 -2.0742 -1.3639 6 6 2.3101 -2.7259 -2.4928 7 6 2.9547 -2.0142 -3.4872 8 16 3.5420 -2.8449 -4.9258 9 6 5.2296 -3.3213 -4.4615 10 8 2.7216 -4.0037 -4.9832 11 6 3.1361 -0.6502 -3.3543 12 6 2.6753 0.0015 -2.2256 13 7 2.0184 -0.6905 1.1963 14 6 1.5869 -2.0618 1.4779 15 6 2.8781 -0.0540 2.0513 16 1 3.6311 0.6147 1.6611 17 6 2.7818 -0.2683 3.4193 18 7 3.8220 -0.0478 4.1949 19 14 1.1756 -0.8695 4.1597 20 1 1.2155 -2.3479 4.2947 21 1 0.9870 -0.2552 5.4984 22 1 0.0474 -0.4836 3.2746 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.3514 -2.6312 -0.5844 27 1 2.1678 -3.7914 -2.5971 28 1 5.1962 -3.9710 -3.5869 29 1 5.6986 -3.8513 -5.2905 30 1 5.8083 -2.4275 -4.2282 31 1 3.6381 -0.0939 -4.1320 32 1 2.8173 1.0671 -2.1216 33 1 2.2445 -2.7626 0.9634 34 1 1.6313 -2.2434 2.5518 35 1 0.5639 -2.2000 1.1280 36 1 3.7548 -0.1979 5.1508 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175405976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:30 Heat of formation + Delta-G solvation = 20.468708 kcal Electronic energy + Delta-G solvation = -18272.732494 eV Core-core repulsion = 15463.836180 eV Total energy + Delta-G solvation = -2808.896313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.25321 -36.27344 -35.69461 -32.63622 -30.99401 -30.50909 -29.08683 -28.63949 -26.45471 -24.09324 -22.43120 -22.20667 -19.55773 -18.00774 -16.98607 -16.49080 -15.66749 -15.28773 -14.85754 -14.76894 -14.04610 -13.95023 -13.66946 -13.43559 -13.18332 -12.92451 -12.57666 -12.32242 -12.20729 -12.11650 -11.85012 -11.70067 -11.24396 -11.13218 -10.74620 -10.52186 -10.35294 -10.10843 -9.91040 -9.64078 -8.77831 -8.65341 -8.57833 -8.28140 -6.93693 -6.04998 -3.46213 1.13428 1.67977 1.97863 2.71782 3.27518 3.43036 3.47940 3.80264 4.05472 4.47539 4.92949 5.09133 5.11073 5.17333 5.20677 5.21834 5.32726 5.67349 5.73644 5.82842 5.89087 5.94013 6.09184 6.14037 6.20743 6.31027 6.43277 6.47553 6.53023 6.55022 6.68983 6.79689 7.04107 7.24996 7.96946 8.30393 8.89658 9.64219 10.03214 11.10362 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031843 B = 0.004877 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.112800 B = 5739.895348 C = 5861.372573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.198 3.802 3 H 0.084 0.916 4 C -0.032 4.032 5 C -0.130 4.130 6 C -0.056 4.056 7 C -0.475 4.475 8 S 1.326 4.674 9 C -0.498 4.498 10 O -0.866 6.866 11 C -0.048 4.048 12 C -0.135 4.135 13 N -0.598 5.598 14 C 0.102 3.898 15 C -0.272 4.272 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.899 5.899 19 Si 0.882 3.118 20 H -0.288 1.288 21 H -0.302 1.302 22 H -0.268 1.268 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.019 0.981 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 -0.334 -18.610 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.090 3.910 3 H 0.102 0.898 4 C -0.035 4.035 5 C -0.149 4.149 6 C -0.075 4.075 7 C -0.573 4.573 8 S 1.524 4.476 9 C -0.654 4.654 10 O -0.861 6.861 11 C -0.067 4.067 12 C -0.155 4.155 13 N -0.321 5.321 14 C -0.042 4.042 15 C -0.400 4.400 16 H 0.097 0.903 17 C -0.164 4.164 18 N -0.539 5.539 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.230 1.230 22 H -0.193 1.193 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.148 0.852 27 H 0.136 0.864 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.370 -0.525 -19.257 19.313 hybrid contribution -0.678 -1.685 2.718 3.269 sum -2.049 -2.210 -16.540 16.812 Atomic orbital electron populations 1.22283 0.97240 1.01385 1.01152 1.19587 0.91963 0.95469 0.83952 0.89762 1.21113 0.92737 0.94283 0.95318 1.21492 1.01024 0.94922 0.97455 1.21027 0.94534 0.99424 0.92563 1.27293 1.12701 1.02591 1.14719 1.69128 0.83970 0.97953 0.96512 1.27765 1.20436 1.08953 1.08276 1.93078 1.61061 1.50756 1.81243 1.20711 0.96583 0.92278 0.97152 1.21172 0.99972 1.00136 0.94177 1.44054 1.54144 1.09777 1.24090 1.21533 0.96263 0.86927 0.99482 1.18778 1.08364 1.26300 0.86532 0.90250 1.25422 0.96786 0.98122 0.96111 1.69869 1.28315 1.50620 1.05145 0.86888 0.86669 0.77294 0.77938 1.21576 1.22974 1.19298 0.92041 0.93168 0.93185 0.85166 0.86359 0.90041 0.88038 0.87123 0.85222 0.85651 0.96307 0.93389 0.94863 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.96 37.16 0.33 -2.44 16 2 C 0.20 3.83 3.03 -69.08 -0.21 3.62 16 3 H 0.08 1.63 7.66 -51.93 -0.40 1.23 16 4 C -0.03 -0.56 4.95 -104.63 -0.52 -1.08 16 5 C -0.13 -2.30 8.23 -39.58 -0.33 -2.63 16 6 C -0.06 -0.93 9.44 -39.58 -0.37 -1.31 16 7 C -0.48 -6.38 5.61 -39.58 -0.22 -6.60 16 8 S 1.33 13.07 14.19 -107.50 -1.53 11.54 16 9 C -0.50 -4.60 10.70 101.05 1.08 -3.52 16 10 O -0.87 -14.20 16.90 -35.23 -0.60 -14.79 16 11 C -0.05 -0.57 9.75 -39.58 -0.39 -0.96 16 12 C -0.13 -1.97 9.67 -39.58 -0.38 -2.36 16 13 N -0.60 -14.06 2.38 -174.81 -0.42 -14.48 16 14 C 0.10 2.26 7.27 59.84 0.43 2.70 16 15 C -0.27 -7.52 9.84 -15.06 -0.15 -7.66 16 16 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 17 C 0.04 1.04 5.29 -17.44 -0.09 0.95 16 18 N -0.90 -27.32 13.97 55.49 0.78 -26.54 16 19 Si 0.88 22.20 25.02 -169.99 -4.25 17.95 16 20 H -0.29 -7.11 6.65 56.52 0.38 -6.74 16 21 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.84 6.36 -51.93 -0.33 0.51 16 26 H 0.13 2.33 4.72 -52.49 -0.25 2.09 16 27 H 0.12 2.01 7.45 -52.48 -0.39 1.62 16 28 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.58 7.97 -52.48 -0.42 1.17 16 33 H 0.02 0.41 6.70 -51.93 -0.35 0.06 16 34 H 0.05 1.15 3.29 -51.93 -0.17 0.98 16 35 H 0.03 0.65 5.65 -51.93 -0.29 0.35 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 300.99 15.07 4.54 4.54 Total: -1.00 -36.29 300.99 -7.00 -43.29 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.72 Total: -0.21 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.81 Total: -21.29 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.36 Total: -41.02 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.60 Total: -14.79 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.25 Total: 17.95 kcal Atomic # 16 Polarization: 13.07 SS G_CDS: -1.53 Total: 11.54 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.29 -7.00 -43.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175405976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.761 kcal (2) G-P(sol) polarization free energy of solvation -36.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds