Wall clock time and date at job start Mon Mar 30 2020 00:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47150 * 239.99491 * 2 1 3 5 5 C 1.38233 * 119.99956 * 291.46326 * 4 2 1 6 6 C 1.38234 * 120.00116 * 179.97438 * 5 4 2 7 7 C 1.38239 * 120.00112 * 0.09184 * 6 5 4 8 8 S 1.76191 * 120.00194 * 179.97438 * 7 6 5 9 9 C 1.81401 * 103.00171 * 269.86457 * 8 7 6 10 10 O 1.42098 * 103.00528 * 23.71867 * 8 7 6 11 11 C 1.38236 * 119.99927 * 359.84172 * 7 6 5 12 12 C 1.38231 * 120.00161 * 111.44094 * 4 2 1 13 13 N 1.46504 * 109.47009 * 119.99287 * 2 1 3 14 14 C 1.46495 * 119.99925 * 55.61026 * 13 2 1 15 15 C 1.36941 * 120.00127 * 235.60961 * 13 2 1 16 16 H 1.08000 * 119.99610 * 323.69512 * 15 13 2 17 17 C 1.38806 * 119.99939 * 143.69310 * 15 13 2 18 18 N 1.31614 * 120.00266 * 157.31811 * 17 15 13 19 19 Si 1.86800 * 120.00048 * 337.31543 * 17 15 13 20 20 H 1.48501 * 109.47262 * 95.25271 * 19 17 15 21 21 H 1.48498 * 109.47234 * 215.24715 * 19 17 15 22 22 H 1.48494 * 109.47376 * 335.25160 * 19 17 15 23 23 H 1.09003 * 109.47014 * 300.00802 * 1 2 3 24 24 H 1.08993 * 109.46951 * 60.00422 * 1 2 3 25 25 H 1.09002 * 109.47015 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00205 * 359.69860 * 5 4 2 27 27 H 1.08004 * 120.00536 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47154 * 60.00109 * 9 8 7 29 29 H 1.09002 * 109.47266 * 180.02562 * 9 8 7 30 30 H 1.09008 * 109.46977 * 299.99942 * 9 8 7 31 31 H 1.07997 * 120.00240 * 180.11327 * 11 7 6 32 32 H 1.08004 * 120.00053 * 359.97438 * 12 4 2 33 33 H 1.09007 * 109.47183 * 86.62883 * 14 13 2 34 34 H 1.09003 * 109.47218 * 206.63076 * 14 13 2 35 35 H 1.08997 * 109.47463 * 326.63207 * 14 13 2 36 36 H 0.97001 * 120.00519 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 6 1.8498 -2.0742 -1.3639 6 6 2.3101 -2.7259 -2.4928 7 6 2.9547 -2.0142 -3.4872 8 16 3.5420 -2.8449 -4.9258 9 6 5.2296 -3.3213 -4.4615 10 8 2.7216 -4.0037 -4.9832 11 6 3.1361 -0.6502 -3.3543 12 6 2.6753 0.0015 -2.2256 13 7 2.0184 -0.6905 1.1963 14 6 1.5869 -2.0618 1.4779 15 6 2.8781 -0.0540 2.0513 16 1 3.6311 0.6147 1.6611 17 6 2.7818 -0.2683 3.4193 18 7 3.8220 -0.0478 4.1949 19 14 1.1756 -0.8695 4.1597 20 1 1.2155 -2.3479 4.2947 21 1 0.9870 -0.2552 5.4984 22 1 0.0474 -0.4836 3.2746 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.3514 -2.6312 -0.5844 27 1 2.1678 -3.7914 -2.5971 28 1 5.1962 -3.9710 -3.5869 29 1 5.6986 -3.8513 -5.2905 30 1 5.8083 -2.4275 -4.2282 31 1 3.6381 -0.0939 -4.1320 32 1 2.8173 1.0671 -2.1216 33 1 2.2445 -2.7626 0.9634 34 1 1.6313 -2.2434 2.5518 35 1 0.5639 -2.2000 1.1280 36 1 3.7548 -0.1979 5.1508 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175405976.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:30 Heat of formation + Delta-G solvation = -5.424995 kcal Electronic energy + Delta-G solvation = -18273.855329 eV Core-core repulsion = 15463.836180 eV Total energy + Delta-G solvation = -2810.019149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52723 -37.87884 -36.83311 -34.50162 -32.59813 -31.82629 -30.29587 -29.53498 -28.29765 -25.80006 -23.78061 -23.53189 -21.05842 -19.14840 -18.88794 -17.61181 -17.42113 -16.60460 -16.24543 -15.75822 -15.50304 -15.35950 -15.14604 -14.65054 -14.46678 -14.25690 -14.08353 -13.84209 -13.69133 -13.35907 -13.23669 -12.91826 -12.78721 -12.52180 -12.40981 -12.22003 -11.85972 -11.76490 -11.59025 -11.24788 -10.67163 -9.92965 -9.81337 -9.31110 -8.87300 -8.25100 -5.62440 0.03174 0.51275 1.05643 1.26262 1.37019 1.48490 1.83482 2.37578 2.71236 2.99646 3.05660 3.35508 3.87804 3.93378 4.13521 4.31009 4.33223 4.42727 4.45406 4.51113 4.52376 4.67844 4.72933 4.84220 4.90411 4.96472 5.03150 5.16759 5.18394 5.28208 5.34642 5.46103 5.75320 5.87272 6.09211 6.12769 6.89720 7.55418 7.98392 8.94355 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.031843 B = 0.004877 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.112800 B = 5739.895348 C = 5861.372573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.194 3.806 3 H 0.079 0.921 4 C -0.057 4.057 5 C -0.149 4.149 6 C -0.081 4.081 7 C -0.481 4.481 8 S 1.412 4.588 9 C -0.500 4.500 10 O -0.929 6.929 11 C -0.031 4.031 12 C -0.142 4.142 13 N -0.610 5.610 14 C 0.104 3.896 15 C -0.259 4.259 16 H 0.047 0.953 17 C -0.019 4.019 18 N -0.947 5.947 19 Si 0.944 3.056 20 H -0.282 1.282 21 H -0.307 1.307 22 H -0.255 1.255 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.192 0.808 32 H 0.146 0.854 33 H 0.019 0.981 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 0.267 -21.390 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.088 3.912 3 H 0.097 0.903 4 C -0.059 4.059 5 C -0.168 4.168 6 C -0.101 4.101 7 C -0.577 4.577 8 S 1.610 4.390 9 C -0.658 4.658 10 O -0.925 6.925 11 C -0.049 4.049 12 C -0.161 4.161 13 N -0.333 5.333 14 C -0.040 4.040 15 C -0.389 4.389 16 H 0.065 0.935 17 C -0.215 4.215 18 N -0.591 5.591 19 Si 0.773 3.227 20 H -0.209 1.209 21 H -0.235 1.235 22 H -0.179 1.179 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.209 0.791 32 H 0.164 0.836 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.571 0.081 -22.065 22.121 hybrid contribution -0.471 -1.871 3.379 3.891 sum -2.042 -1.790 -18.687 18.883 Atomic orbital electron populations 1.22174 0.95373 1.01646 1.01985 1.19712 0.93410 0.95021 0.83011 0.90282 1.20941 0.94958 0.94255 0.95728 1.21411 1.02247 0.95243 0.97908 1.21044 0.96343 0.99037 0.93641 1.27873 1.11350 1.03719 1.14746 1.68355 0.82482 0.95078 0.93118 1.27800 1.19963 1.10033 1.07990 1.92954 1.63944 1.53595 1.82043 1.21363 0.94574 0.91661 0.97319 1.21556 0.99002 1.01286 0.94258 1.44137 1.54057 1.10349 1.24770 1.21535 0.97840 0.86376 0.98245 1.18694 1.08002 1.24992 0.87199 0.93541 1.26011 0.99436 0.99445 0.96633 1.69988 1.30243 1.53485 1.05360 0.85876 0.83011 0.77004 0.76832 1.20925 1.23537 1.17878 0.93267 0.90182 0.93155 0.86482 0.87977 0.92815 0.85719 0.84377 0.79085 0.83596 0.96285 0.95241 0.92230 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 8.96 71.98 0.64 -4.37 16 2 C 0.19 7.40 3.03 44.24 0.13 7.53 16 3 H 0.08 3.02 7.66 -2.39 -0.02 3.00 16 4 C -0.06 -1.93 4.95 -19.87 -0.10 -2.03 16 5 C -0.15 -5.26 8.23 22.27 0.18 -5.08 16 6 C -0.08 -2.67 9.44 22.27 0.21 -2.46 16 7 C -0.48 -11.66 5.61 22.27 0.12 -11.53 16 8 S 1.41 23.54 14.19 -56.49 -0.80 22.74 16 9 C -0.50 -7.53 10.70 113.37 1.21 -6.32 16 10 O -0.93 -29.33 16.90 -148.98 -2.52 -31.85 16 11 C -0.03 -0.60 9.75 22.27 0.22 -0.38 16 12 C -0.14 -3.73 9.67 22.27 0.22 -3.52 16 13 N -0.61 -28.75 2.38 -706.98 -1.68 -30.44 16 14 C 0.10 4.59 7.27 127.77 0.93 5.52 16 15 C -0.26 -14.68 9.84 84.03 0.83 -13.85 16 16 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 17 C -0.02 -1.09 5.29 84.86 0.45 -0.64 16 18 N -0.95 -59.29 13.97 21.65 0.30 -58.99 16 19 Si 0.94 46.59 25.02 68.60 1.72 48.31 16 20 H -0.28 -13.50 6.65 99.48 0.66 -12.84 16 21 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 22 H -0.25 -11.88 7.11 99.48 0.71 -11.17 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.05 1.63 6.36 -2.39 -0.02 1.61 16 26 H 0.12 4.28 4.72 -2.91 -0.01 4.26 16 27 H 0.10 3.59 7.45 -2.91 -0.02 3.57 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.15 3.18 7.97 -2.91 -0.02 3.16 16 33 H 0.02 0.84 6.70 -2.38 -0.02 0.82 16 34 H 0.03 1.40 3.29 -2.39 -0.01 1.39 16 35 H 0.06 2.29 5.65 -2.39 -0.01 2.27 16 36 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -82.22 300.99 3.10 -79.12 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.03 Total: 8.24 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 5.05 Total: -37.13 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -1.38 Total: -89.42 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -2.52 Total: -31.85 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.72 Total: 48.31 kcal Atomic # 16 Polarization: 23.54 SS G_CDS: -0.80 Total: 22.74 kcal Total: -82.22 3.10 -79.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175405976.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.700 kcal (2) G-P(sol) polarization free energy of solvation -82.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds