Wall clock time and date at job start Mon Mar 30 2020 00:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47000 * 2 1 4 4 C 1.50699 * 109.47119 * 120.00104 * 2 1 3 5 5 H 1.08007 * 119.99757 * 120.00257 * 4 2 1 6 6 C 1.37877 * 120.00151 * 300.00100 * 4 2 1 7 7 N 1.31511 * 119.99901 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47021 * 59.99710 * 8 6 4 10 10 H 1.48501 * 109.46884 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47048 * 299.99694 * 8 6 4 12 12 N 1.46499 * 109.47025 * 239.99998 * 2 1 3 13 13 C 1.46496 * 120.00383 * 300.00082 * 12 2 1 14 14 C 1.34773 * 119.99895 * 119.99692 * 12 2 1 15 15 O 1.21608 * 120.00397 * 4.44739 * 14 12 2 16 16 C 1.47458 * 120.00354 * 184.44509 * 14 12 2 17 17 C 1.39813 * 120.10754 * 310.84065 * 16 14 12 18 18 C 1.37603 * 119.93283 * 180.02562 * 17 16 14 19 19 C 1.39096 * 120.16201 * 359.97438 * 18 17 16 20 20 O 1.35713 * 119.88996 * 180.02562 * 19 18 17 21 21 C 1.38834 * 120.22382 * 359.72260 * 19 18 17 22 22 C 1.38058 * 120.05787 * 0.55550 * 21 19 18 23 23 F 1.35106 * 120.07759 * 179.72012 * 22 21 19 24 24 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46732 * 299.99660 * 1 2 3 26 26 H 1.08995 * 109.47051 * 59.99765 * 1 2 3 27 27 H 0.97001 * 120.00268 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47303 * 273.10253 * 13 12 2 29 29 H 1.09007 * 109.46816 * 33.10030 * 13 12 2 30 30 H 1.08996 * 109.47772 * 153.10052 * 13 12 2 31 31 H 1.08006 * 120.03763 * 0.03725 * 17 16 14 32 32 H 1.08005 * 119.92112 * 180.02562 * 18 17 16 33 33 H 0.96694 * 114.00310 * 89.99594 * 20 19 18 34 34 H 1.07997 * 119.97286 * 180.30733 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8279 -0.4193 5.2204 11 1 1.8280 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0833 15 8 3.1537 1.1025 -1.8519 16 6 3.2036 -0.6989 -3.3347 17 6 3.7496 -1.9855 -3.3000 18 6 4.1320 -2.6009 -4.4699 19 6 3.9762 -1.9463 -5.6872 20 8 4.3547 -2.5586 -6.8377 21 6 3.4290 -0.6711 -5.7299 22 6 3.0475 -0.0428 -4.5613 23 9 2.5201 1.2005 -4.6019 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 0.7095 1.1617 3.4844 28 1 2.3854 -2.7377 -0.9252 29 1 0.6669 -2.2862 -1.0332 30 1 1.6776 -2.2991 -2.4983 31 1 3.8710 -2.4961 -2.3560 32 1 4.5534 -3.5950 -4.4429 33 1 3.6556 -3.0816 -7.2533 34 1 3.3052 -0.1685 -6.6778 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181255445.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:44 Heat of formation + Delta-G solvation = -88.728775 kcal Electronic energy + Delta-G solvation = -20319.028924 eV Core-core repulsion = 16939.184276 eV Total energy + Delta-G solvation = -3379.844648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.82738 -40.08446 -38.83491 -36.51024 -35.38445 -32.93270 -31.04115 -30.35038 -28.86771 -26.29240 -25.24319 -23.74513 -22.96434 -21.20365 -19.00741 -18.82776 -17.03867 -16.86248 -16.50975 -16.13890 -15.80768 -15.37899 -15.01158 -14.55587 -14.32943 -14.14502 -13.77623 -13.34287 -12.68826 -12.55196 -12.38938 -12.16101 -11.80318 -11.56846 -11.40629 -11.08304 -10.96009 -10.82558 -10.73812 -10.29773 -10.18333 -9.23903 -9.18502 -9.04777 -8.69984 -8.44325 -7.66057 -6.08532 -4.16983 0.70447 1.01590 3.00437 3.27103 3.32610 3.33998 3.48659 3.74605 3.84825 4.31703 4.38227 4.62423 4.84008 4.88179 5.12961 5.22661 5.44752 5.64804 5.78629 5.85090 5.99888 6.06405 6.06899 6.23005 6.51613 6.73653 6.79510 7.01687 7.30657 7.36778 7.47205 7.68189 7.97880 8.15670 8.43604 8.77815 8.94776 9.49252 10.96846 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.005064 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.106863 B = 5527.420759 C = 5990.705228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.081 3.919 14 C 0.545 3.455 15 O -0.535 6.535 16 C -0.157 4.157 17 C -0.044 4.044 18 C -0.162 4.162 19 C 0.145 3.855 20 O -0.494 6.494 21 C -0.191 4.191 22 C 0.161 3.839 23 F -0.120 7.120 24 H 0.031 0.969 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.147 0.853 32 H 0.140 0.860 33 H 0.395 0.605 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -9.533 -15.273 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.063 4.063 14 C 0.330 3.670 15 O -0.413 6.413 16 C -0.161 4.161 17 C -0.063 4.063 18 C -0.181 4.181 19 C 0.100 3.900 20 O -0.305 6.305 21 C -0.211 4.211 22 C 0.140 3.860 23 F -0.099 7.099 24 H 0.050 0.950 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.251 0.749 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.383 -8.485 -14.847 17.266 hybrid contribution -0.217 -0.583 0.700 0.937 sum 2.166 -9.069 -14.147 16.943 Atomic orbital electron populations 1.22105 0.98030 0.99464 1.00993 1.19007 0.90950 0.94583 0.79660 0.91750 1.21244 1.32022 1.13049 0.90184 0.92281 1.24891 0.94912 0.94967 0.98967 1.69865 1.36233 1.22504 1.23932 0.86534 0.79250 0.79520 0.81939 1.20233 1.21151 1.20227 1.48184 1.48172 1.11704 1.23237 1.21768 1.01845 0.83089 0.99583 1.17920 0.79981 0.86112 0.82968 1.90796 1.55236 1.18107 1.77148 1.20402 1.05529 0.96340 0.93869 1.21240 0.93858 0.92047 0.99164 1.21383 1.03589 1.01602 0.91496 1.18233 0.94926 0.90795 0.86047 1.84771 1.41077 1.67792 1.36885 1.21266 1.04501 0.97149 0.98140 1.17384 0.95517 0.80459 0.92632 1.91578 1.83169 1.38008 1.97095 0.94997 0.88629 0.96906 0.92572 0.92887 0.90829 0.92497 0.83552 0.84257 0.74852 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.94 37.16 0.33 -3.19 16 2 C 0.26 6.62 2.63 -69.08 -0.18 6.44 16 3 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 4 C -0.53 -14.13 8.37 -34.44 -0.29 -14.42 16 5 H 0.06 1.54 7.56 -52.48 -0.40 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.42 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.58 -12.56 2.75 -176.52 -0.49 -13.05 16 13 C 0.08 1.33 8.35 59.84 0.50 1.83 16 14 C 0.54 11.89 6.99 -12.51 -0.09 11.80 16 15 O -0.53 -14.03 15.99 5.27 0.08 -13.94 16 16 C -0.16 -2.64 4.90 -104.90 -0.51 -3.16 16 17 C -0.04 -0.58 7.60 -39.22 -0.30 -0.88 16 18 C -0.16 -1.70 9.96 -39.49 -0.39 -2.09 16 19 C 0.14 1.54 6.71 -39.04 -0.26 1.28 16 20 O -0.49 -4.18 13.49 -18.85 -0.25 -4.44 16 21 C -0.19 -2.31 9.95 -39.43 -0.39 -2.71 16 22 C 0.16 2.53 7.25 -39.00 -0.28 2.25 16 23 F -0.12 -2.17 16.51 2.25 0.04 -2.13 16 24 H 0.03 0.69 6.68 -51.93 -0.35 0.35 16 25 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.05 0.81 7.47 -51.93 -0.39 0.42 16 29 H 0.07 1.21 6.44 -51.93 -0.33 0.88 16 30 H 0.06 0.76 5.67 -51.93 -0.29 0.47 16 31 H 0.15 1.77 6.57 -52.48 -0.34 1.42 16 32 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 33 H 0.39 1.28 9.06 45.56 0.41 1.69 16 34 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -33.19 292.86 -5.33 -38.52 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -2.77 Total: 0.35 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.96 Total: -1.17 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.14 Total: -37.47 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.17 Total: -18.38 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.19 -5.33 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181255445.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.208 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds