Wall clock time and date at job start Mon Mar 30 2020 00:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47000 * 2 1 4 4 C 1.50699 * 109.47119 * 120.00104 * 2 1 3 5 5 H 1.08007 * 119.99757 * 120.00257 * 4 2 1 6 6 C 1.37877 * 120.00151 * 300.00100 * 4 2 1 7 7 N 1.31511 * 119.99901 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47021 * 59.99710 * 8 6 4 10 10 H 1.48501 * 109.46884 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47048 * 299.99694 * 8 6 4 12 12 N 1.46499 * 109.47025 * 239.99998 * 2 1 3 13 13 C 1.46496 * 120.00383 * 300.00082 * 12 2 1 14 14 C 1.34773 * 119.99895 * 119.99692 * 12 2 1 15 15 O 1.21608 * 120.00397 * 4.44739 * 14 12 2 16 16 C 1.47458 * 120.00354 * 184.44509 * 14 12 2 17 17 C 1.39813 * 120.10754 * 310.84065 * 16 14 12 18 18 C 1.37603 * 119.93283 * 180.02562 * 17 16 14 19 19 C 1.39096 * 120.16201 * 359.97438 * 18 17 16 20 20 O 1.35713 * 119.88996 * 180.02562 * 19 18 17 21 21 C 1.38834 * 120.22382 * 359.72260 * 19 18 17 22 22 C 1.38058 * 120.05787 * 0.55550 * 21 19 18 23 23 F 1.35106 * 120.07759 * 179.72012 * 22 21 19 24 24 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46732 * 299.99660 * 1 2 3 26 26 H 1.08995 * 109.47051 * 59.99765 * 1 2 3 27 27 H 0.97001 * 120.00268 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47303 * 273.10253 * 13 12 2 29 29 H 1.09007 * 109.46816 * 33.10030 * 13 12 2 30 30 H 1.08996 * 109.47772 * 153.10052 * 13 12 2 31 31 H 1.08006 * 120.03763 * 0.03725 * 17 16 14 32 32 H 1.08005 * 119.92112 * 180.02562 * 18 17 16 33 33 H 0.96694 * 114.00310 * 89.99594 * 20 19 18 34 34 H 1.07997 * 119.97286 * 180.30733 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0076 10 1 1.8279 -0.4193 5.2204 11 1 1.8280 -2.5199 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0833 15 8 3.1537 1.1025 -1.8519 16 6 3.2036 -0.6989 -3.3347 17 6 3.7496 -1.9855 -3.3000 18 6 4.1320 -2.6009 -4.4699 19 6 3.9762 -1.9463 -5.6872 20 8 4.3547 -2.5586 -6.8377 21 6 3.4290 -0.6711 -5.7299 22 6 3.0475 -0.0428 -4.5613 23 9 2.5201 1.2005 -4.6019 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 0.7095 1.1617 3.4844 28 1 2.3854 -2.7377 -0.9252 29 1 0.6669 -2.2862 -1.0332 30 1 1.6776 -2.2991 -2.4983 31 1 3.8710 -2.4961 -2.3560 32 1 4.5534 -3.5950 -4.4429 33 1 3.6556 -3.0816 -7.2533 34 1 3.3052 -0.1685 -6.6778 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181255445.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:43 Heat of formation + Delta-G solvation = -112.988043 kcal Electronic energy + Delta-G solvation = -20320.080885 eV Core-core repulsion = 16939.184276 eV Total energy + Delta-G solvation = -3380.896608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.07888 -41.33332 -40.09653 -37.48478 -37.20426 -34.83510 -32.30318 -31.60139 -30.38427 -27.76676 -27.31229 -25.00815 -23.99363 -22.78173 -20.55396 -19.74964 -18.65766 -18.26375 -17.77582 -17.63541 -17.17249 -16.83241 -16.39425 -15.92766 -15.82350 -15.35260 -14.93292 -14.72498 -14.47499 -14.05636 -13.68453 -13.49119 -13.35704 -12.95655 -12.89776 -12.73784 -12.72765 -12.56156 -12.19688 -12.13385 -11.74017 -11.22113 -10.88449 -10.52745 -10.06217 -9.77377 -9.40645 -8.14809 -6.32182 -0.33502 0.04633 1.42526 1.45624 1.52839 1.64759 2.15827 2.38377 2.49557 2.84649 3.13289 3.31665 3.54031 3.68279 3.99700 4.16516 4.35923 4.56812 4.64053 4.71130 4.82057 4.84615 4.90998 4.98641 5.01612 5.09317 5.16237 5.42576 5.54609 5.61243 5.63402 5.98682 6.12528 6.68392 6.74296 6.80701 7.20462 7.41075 8.89850 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.005064 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.106863 B = 5527.420759 C = 5990.705228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.969 3.031 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.588 5.588 13 C 0.077 3.923 14 C 0.536 3.464 15 O -0.599 6.599 16 C -0.186 4.186 17 C -0.039 4.039 18 C -0.143 4.143 19 C 0.171 3.829 20 O -0.494 6.494 21 C -0.185 4.185 22 C 0.134 3.866 23 F -0.146 7.146 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.016 0.984 27 H 0.265 0.735 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.423 0.577 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -13.347 -16.887 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.794 3.206 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.183 1.183 12 N -0.317 5.317 13 C -0.064 4.064 14 C 0.325 3.675 15 O -0.482 6.482 16 C -0.190 4.190 17 C -0.058 4.058 18 C -0.161 4.161 19 C 0.125 3.875 20 O -0.309 6.309 21 C -0.204 4.204 22 C 0.114 3.886 23 F -0.124 7.124 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.174 0.826 32 H 0.196 0.804 33 H 0.285 0.715 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.248 -12.372 -16.505 20.881 hybrid contribution -0.443 0.541 1.032 1.246 sum 2.805 -11.831 -15.473 19.679 Atomic orbital electron populations 1.21890 0.96866 1.00418 0.99947 1.18619 0.91797 0.92179 0.81595 0.97649 1.21513 1.32138 1.13215 0.90811 0.91652 1.25784 0.94999 0.95624 1.02167 1.70024 1.37289 1.23908 1.24563 0.85449 0.78338 0.79048 0.77803 1.20301 1.21063 1.18317 1.48172 1.47883 1.13633 1.22016 1.22054 1.02137 0.80077 1.02175 1.18743 0.78934 0.85527 0.84327 1.90740 1.57637 1.21067 1.78709 1.20055 1.09171 0.98276 0.91466 1.21339 0.93249 0.90332 1.00832 1.21708 1.01656 1.02657 0.90070 1.18247 0.92240 0.89926 0.87080 1.84722 1.42311 1.67951 1.35904 1.21450 1.03752 0.97776 0.97399 1.17747 0.97145 0.80000 0.93722 1.91509 1.83894 1.39777 1.97247 0.92847 0.91112 0.96459 0.92607 0.91257 0.90852 0.89061 0.82599 0.80417 0.71520 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.94 71.98 0.64 -5.91 16 2 C 0.26 13.96 2.63 44.25 0.12 14.08 16 3 H 0.01 0.36 6.91 -2.39 -0.02 0.34 16 4 C -0.54 -29.43 8.37 25.60 0.21 -29.21 16 5 H 0.07 3.40 7.56 -2.91 -0.02 3.38 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.36 16 8 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 N -0.59 -25.96 2.75 -830.65 -2.29 -28.25 16 13 C 0.08 2.41 8.35 127.77 1.07 3.48 16 14 C 0.54 24.47 6.99 86.67 0.61 25.07 16 15 O -0.60 -33.92 15.99 -4.06 -0.06 -33.99 16 16 C -0.19 -6.20 4.90 -20.04 -0.10 -6.30 16 17 C -0.04 -0.90 7.60 22.50 0.17 -0.73 16 18 C -0.14 -2.27 9.96 22.33 0.22 -2.05 16 19 C 0.17 2.82 6.71 22.62 0.15 2.98 16 20 O -0.49 -5.55 13.49 -90.35 -1.22 -6.77 16 21 C -0.18 -3.99 9.95 22.37 0.22 -3.77 16 22 C 0.13 4.21 7.25 22.65 0.16 4.38 16 23 F -0.15 -5.54 16.51 44.97 0.74 -4.79 16 24 H 0.05 2.34 6.68 -2.38 -0.02 2.33 16 25 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.07 1.94 7.47 -2.39 -0.02 1.92 16 29 H 0.07 2.29 6.44 -2.38 -0.02 2.27 16 30 H 0.09 2.21 5.67 -2.39 -0.01 2.20 16 31 H 0.16 3.27 6.57 -2.91 -0.02 3.25 16 32 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.42 0.15 9.06 -74.06 -0.67 -0.52 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -78.12 292.86 3.85 -74.27 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.48 Total: 4.74 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 3.93 Total: 3.22 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.04 Total: -81.61 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.28 Total: -40.75 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.74 Total: -4.79 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -78.12 3.85 -74.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181255445.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.715 kcal (2) G-P(sol) polarization free energy of solvation -78.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds