Wall clock time and date at job start Mon Mar 30 2020 00:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47216 * 2 1 4 4 C 1.50704 * 109.46968 * 239.99819 * 2 1 3 5 5 H 1.07994 * 120.00128 * 239.99939 * 4 2 1 6 6 C 1.37879 * 120.00091 * 60.00042 * 4 2 1 7 7 N 1.31518 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00217 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47277 * 60.00151 * 8 6 4 10 10 H 1.48506 * 109.47046 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47212 * 300.00274 * 8 6 4 12 12 N 1.46498 * 109.46895 * 120.00209 * 2 1 3 13 13 C 1.46496 * 120.00222 * 60.00067 * 12 2 1 14 14 C 1.34779 * 119.99752 * 239.99523 * 12 2 1 15 15 O 1.21609 * 119.99878 * 5.28477 * 14 12 2 16 16 C 1.47450 * 120.00095 * 185.27847 * 14 12 2 17 17 C 1.39818 * 120.10984 * 314.81888 * 16 14 12 18 18 C 1.37606 * 119.93048 * 179.78654 * 17 16 14 19 19 C 1.39093 * 120.16487 * 0.46713 * 18 17 16 20 20 O 1.35707 * 119.89049 * 179.76747 * 19 18 17 21 21 C 1.38838 * 120.21948 * 359.78335 * 19 18 17 22 22 C 1.38058 * 120.06513 * 359.97438 * 21 19 18 23 23 F 1.35099 * 120.07856 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47537 * 300.00195 * 1 2 3 26 26 H 1.09004 * 109.47324 * 60.00284 * 1 2 3 27 27 H 0.97009 * 119.99734 * 179.97438 * 7 6 4 28 28 H 1.09009 * 109.47006 * 275.30978 * 13 12 2 29 29 H 1.09001 * 109.47425 * 155.31508 * 13 12 2 30 30 H 1.09000 * 109.47550 * 35.30650 * 13 12 2 31 31 H 1.07998 * 120.02979 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.91794 * 180.20441 * 18 17 16 33 33 H 0.96702 * 114.00019 * 270.01456 * 20 19 18 34 34 H 1.08005 * 119.96734 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1191 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0081 1.1529 1.9418 16 6 3.3803 -0.7602 3.2254 17 6 2.5962 -1.6436 3.9737 18 6 3.1491 -2.3211 5.0361 19 6 4.4837 -2.1221 5.3738 20 8 5.0219 -2.7897 6.4256 21 6 5.2669 -1.2426 4.6385 22 6 4.7230 -0.5617 3.5677 23 9 5.4848 0.2946 2.8524 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.7095 1.1618 -3.4845 28 1 0.6911 -2.1465 1.9161 29 1 2.4166 -2.5571 2.0659 30 1 1.6218 -2.6196 0.4745 31 1 1.5586 -1.7962 3.7161 32 1 2.5441 -3.0059 5.6119 33 1 4.9431 -2.3237 7.2692 34 1 6.3028 -1.0915 4.9040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181255457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:47 Heat of formation + Delta-G solvation = -87.098101 kcal Electronic energy + Delta-G solvation = -20338.768138 eV Core-core repulsion = 16958.994202 eV Total energy + Delta-G solvation = -3379.773936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.77712 -40.09811 -38.83176 -36.50592 -35.38528 -32.94534 -31.04816 -30.33829 -28.85236 -26.29653 -25.24205 -23.71804 -22.96388 -21.19716 -19.00703 -18.83401 -17.05717 -16.76888 -16.46601 -16.25822 -15.72936 -15.32558 -15.03972 -14.55701 -14.30778 -14.10869 -13.77417 -13.31215 -12.71780 -12.49949 -12.42716 -12.05401 -11.81006 -11.55403 -11.40702 -11.07214 -10.93902 -10.84491 -10.72608 -10.28468 -10.17616 -9.28587 -9.16809 -9.01532 -8.67747 -8.43695 -7.65411 -6.08618 -4.16973 0.70248 1.02477 2.99204 3.27955 3.33106 3.34535 3.52703 3.70925 3.93333 4.33132 4.38670 4.61757 4.83357 4.88960 5.12566 5.22797 5.43576 5.68169 5.80282 5.84807 5.95511 6.04829 6.06737 6.33713 6.52542 6.73258 6.80472 7.02925 7.31008 7.35913 7.49200 7.68798 7.98786 8.15974 8.44061 8.77476 8.95339 9.49315 10.96739 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.005079 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.746019 B = 5511.050588 C = 5634.266044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.545 3.455 15 O -0.537 6.537 16 C -0.160 4.160 17 C -0.046 4.046 18 C -0.164 4.164 19 C 0.146 3.854 20 O -0.495 6.495 21 C -0.192 4.192 22 C 0.165 3.835 23 F -0.118 7.118 24 H 0.030 0.970 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.264 0.736 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.395 0.605 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 -7.688 16.009 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.070 4.070 14 C 0.331 3.669 15 O -0.416 6.416 16 C -0.164 4.164 17 C -0.065 4.065 18 C -0.183 4.183 19 C 0.101 3.899 20 O -0.306 6.306 21 C -0.212 4.212 22 C 0.144 3.856 23 F -0.096 7.096 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.252 0.748 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.223 -7.318 15.287 17.252 hybrid contribution 0.383 -0.129 -0.612 0.734 sum 3.607 -7.447 14.675 16.847 Atomic orbital electron populations 1.22074 0.97932 0.99468 1.00929 1.19003 0.91076 0.94539 0.79535 0.91768 1.21265 1.32066 1.13160 0.90235 0.92227 1.24885 0.94873 0.94964 0.98956 1.69874 1.36195 1.22474 1.23935 0.86533 0.79289 0.79544 0.81898 1.20194 1.21119 1.20214 1.48174 1.48153 1.11669 1.23186 1.21916 0.98814 0.83453 1.02803 1.17913 0.79971 0.86901 0.82124 1.90788 1.60993 1.14638 1.75142 1.20401 0.93687 1.01909 1.00408 1.21268 1.00371 0.92212 0.92661 1.21361 0.94448 1.02604 0.99881 1.18227 0.90462 0.91240 0.89956 1.84760 1.80966 1.46870 1.17955 1.21277 1.02200 0.99794 0.97902 1.17399 0.88003 0.89585 0.90570 1.91592 1.74551 1.67078 1.76361 0.95076 0.96911 0.88727 0.92570 0.93385 0.92006 0.90091 0.83549 0.84288 0.74813 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.97 37.16 0.33 -3.13 16 2 C 0.26 6.66 2.63 -69.08 -0.18 6.48 16 3 H 0.06 1.93 6.91 -51.93 -0.36 1.57 16 4 C -0.53 -14.36 8.04 -34.44 -0.28 -14.63 16 5 H 0.06 1.59 7.25 -52.49 -0.38 1.21 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.58 -12.64 2.75 -176.52 -0.49 -13.12 16 13 C 0.07 1.23 8.04 59.84 0.48 1.71 16 14 C 0.55 11.92 7.08 -12.51 -0.09 11.83 16 15 O -0.54 -13.97 15.81 5.27 0.08 -13.89 16 16 C -0.16 -2.71 5.08 -104.90 -0.53 -3.24 16 17 C -0.05 -0.59 7.44 -39.22 -0.29 -0.88 16 18 C -0.16 -1.69 9.96 -39.49 -0.39 -2.09 16 19 C 0.15 1.56 6.71 -39.04 -0.26 1.30 16 20 O -0.49 -4.22 13.49 -18.82 -0.25 -4.47 16 21 C -0.19 -2.39 9.95 -39.43 -0.39 -2.78 16 22 C 0.17 2.68 7.24 -39.00 -0.28 2.40 16 23 F -0.12 -2.22 16.38 2.25 0.04 -2.18 16 24 H 0.03 0.67 7.67 -51.93 -0.40 0.28 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.05 0.68 7.59 -51.92 -0.39 0.29 16 29 H 0.06 0.88 5.28 -51.93 -0.27 0.61 16 30 H 0.08 1.44 6.96 -51.93 -0.36 1.08 16 31 H 0.15 1.64 6.20 -52.49 -0.33 1.31 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.39 1.34 9.06 45.56 0.41 1.75 16 34 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 292.60 15.07 4.41 4.41 Total: -1.00 -33.28 292.60 -5.38 -38.66 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -2.80 Total: 0.32 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.98 Total: -1.33 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.14 Total: -37.61 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.17 Total: -18.36 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.28 -5.38 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181255457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.437 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds