Wall clock time and date at job start Mon Mar 30 2020 00:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47216 * 2 1 4 4 C 1.50704 * 109.46968 * 239.99819 * 2 1 3 5 5 H 1.07994 * 120.00128 * 239.99939 * 4 2 1 6 6 C 1.37879 * 120.00091 * 60.00042 * 4 2 1 7 7 N 1.31518 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00217 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47277 * 60.00151 * 8 6 4 10 10 H 1.48506 * 109.47046 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47212 * 300.00274 * 8 6 4 12 12 N 1.46498 * 109.46895 * 120.00209 * 2 1 3 13 13 C 1.46496 * 120.00222 * 60.00067 * 12 2 1 14 14 C 1.34779 * 119.99752 * 239.99523 * 12 2 1 15 15 O 1.21609 * 119.99878 * 5.28477 * 14 12 2 16 16 C 1.47450 * 120.00095 * 185.27847 * 14 12 2 17 17 C 1.39818 * 120.10984 * 314.81888 * 16 14 12 18 18 C 1.37606 * 119.93048 * 179.78654 * 17 16 14 19 19 C 1.39093 * 120.16487 * 0.46713 * 18 17 16 20 20 O 1.35707 * 119.89049 * 179.76747 * 19 18 17 21 21 C 1.38838 * 120.21948 * 359.78335 * 19 18 17 22 22 C 1.38058 * 120.06513 * 359.97438 * 21 19 18 23 23 F 1.35099 * 120.07856 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47537 * 300.00195 * 1 2 3 26 26 H 1.09004 * 109.47324 * 60.00284 * 1 2 3 27 27 H 0.97009 * 119.99734 * 179.97438 * 7 6 4 28 28 H 1.09009 * 109.47006 * 275.30978 * 13 12 2 29 29 H 1.09001 * 109.47425 * 155.31508 * 13 12 2 30 30 H 1.09000 * 109.47550 * 35.30650 * 13 12 2 31 31 H 1.07998 * 120.02979 * 359.97438 * 17 16 14 32 32 H 1.08000 * 119.91794 * 180.20441 * 18 17 16 33 33 H 0.96702 * 114.00019 * 270.01456 * 20 19 18 34 34 H 1.08005 * 119.96734 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1191 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0081 1.1529 1.9418 16 6 3.3803 -0.7602 3.2254 17 6 2.5962 -1.6436 3.9737 18 6 3.1491 -2.3211 5.0361 19 6 4.4837 -2.1221 5.3738 20 8 5.0219 -2.7897 6.4256 21 6 5.2669 -1.2426 4.6385 22 6 4.7230 -0.5617 3.5677 23 9 5.4848 0.2946 2.8524 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.7095 1.1618 -3.4845 28 1 0.6911 -2.1465 1.9161 29 1 2.4166 -2.5571 2.0659 30 1 1.6218 -2.6196 0.4745 31 1 1.5586 -1.7962 3.7161 32 1 2.5441 -3.0059 5.6119 33 1 4.9431 -2.3237 7.2692 34 1 6.3028 -1.0915 4.9040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181255457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:47 Heat of formation + Delta-G solvation = -111.524038 kcal Electronic energy + Delta-G solvation = -20339.827326 eV Core-core repulsion = 16958.994202 eV Total energy + Delta-G solvation = -3380.833124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.07057 -41.35093 -40.08962 -37.48306 -37.20908 -34.85561 -32.33322 -31.58429 -30.37065 -27.76989 -27.32871 -24.98461 -24.00726 -22.77739 -20.56894 -19.75711 -18.65724 -18.22396 -17.86132 -17.53102 -17.30233 -16.71904 -16.41589 -15.89738 -15.84681 -15.35161 -14.93689 -14.78155 -14.40405 -13.97421 -13.71926 -13.62922 -13.24823 -13.00293 -12.88626 -12.73858 -12.63246 -12.60734 -12.20673 -12.13791 -11.73467 -11.24991 -10.89462 -10.53995 -10.03737 -9.77458 -9.39322 -8.17100 -6.34191 -0.34375 0.04910 1.40055 1.43166 1.50232 1.64733 2.16450 2.41496 2.47269 2.86798 3.10944 3.32352 3.53625 3.68091 3.99303 4.15675 4.36403 4.56733 4.67092 4.70138 4.82018 4.89371 4.91859 4.99262 5.03098 5.08176 5.16156 5.44587 5.52753 5.60780 5.63096 6.00187 6.12366 6.68596 6.72114 6.79361 7.20011 7.39373 8.87381 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.005079 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.746019 B = 5511.050588 C = 5634.266044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.006 0.994 4 C -0.543 4.543 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.259 1.259 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.588 5.588 13 C 0.070 3.930 14 C 0.536 3.464 15 O -0.598 6.598 16 C -0.189 4.189 17 C -0.038 4.038 18 C -0.144 4.144 19 C 0.171 3.829 20 O -0.493 6.493 21 C -0.188 4.188 22 C 0.133 3.867 23 F -0.147 7.147 24 H 0.051 0.949 25 H 0.022 0.978 26 H 0.068 0.932 27 H 0.266 0.734 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.422 0.578 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 -11.093 18.198 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.159 3.841 3 H 0.024 0.976 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.317 5.317 13 C -0.071 4.071 14 C 0.325 3.675 15 O -0.481 6.481 16 C -0.193 4.193 17 C -0.056 4.056 18 C -0.162 4.162 19 C 0.125 3.875 20 O -0.309 6.309 21 C -0.207 4.207 22 C 0.113 3.887 23 F -0.125 7.125 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.182 0.818 32 H 0.198 0.802 33 H 0.284 0.716 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.071 -10.770 17.526 20.799 hybrid contribution 0.475 0.879 -1.109 1.493 sum 3.546 -9.891 16.417 19.492 Atomic orbital electron populations 1.21844 0.96442 1.00436 1.00100 1.18612 0.92161 0.92055 0.81276 0.97607 1.21519 1.32242 1.13254 0.91123 0.92179 1.25739 0.94963 0.95623 1.02002 1.70021 1.37102 1.23714 1.24602 0.85492 0.78246 0.79139 0.78035 1.18373 1.20684 1.20587 1.48159 1.48120 1.13521 1.21908 1.22200 1.01407 0.80353 1.03173 1.18726 0.79096 0.86525 0.83169 1.90732 1.62893 1.17503 1.77009 1.20088 0.94547 1.04399 1.00267 1.21439 1.00686 0.91011 0.92496 1.21728 0.94427 1.01594 0.98425 1.18261 0.90236 0.89188 0.89793 1.84711 1.80667 1.46756 1.18725 1.21451 1.03290 0.99424 0.96538 1.17823 0.88051 0.90737 0.92102 1.91511 1.75228 1.68397 1.77406 0.92968 0.95936 0.91310 0.92519 0.90131 0.89207 0.91220 0.81831 0.80157 0.71567 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.97 71.98 0.65 -5.66 16 2 C 0.26 14.04 2.63 44.25 0.12 14.15 16 3 H 0.01 0.39 6.91 -2.39 -0.02 0.37 16 4 C -0.54 -30.27 8.04 25.60 0.21 -30.06 16 5 H 0.06 3.26 7.25 -2.91 -0.02 3.23 16 6 C 0.02 0.93 5.30 84.65 0.45 1.37 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.29 16 8 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 9 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.59 -26.09 2.75 -830.64 -2.29 -28.38 16 13 C 0.07 2.23 8.04 127.77 1.03 3.26 16 14 C 0.54 24.47 7.08 86.67 0.61 25.09 16 15 O -0.60 -33.62 15.81 -4.06 -0.06 -33.68 16 16 C -0.19 -6.35 5.08 -20.05 -0.10 -6.45 16 17 C -0.04 -0.84 7.44 22.50 0.17 -0.67 16 18 C -0.14 -2.21 9.96 22.33 0.22 -1.98 16 19 C 0.17 2.87 6.71 22.62 0.15 3.02 16 20 O -0.49 -5.66 13.49 -90.27 -1.22 -6.88 16 21 C -0.19 -4.24 9.95 22.37 0.22 -4.02 16 22 C 0.13 4.35 7.24 22.65 0.16 4.51 16 23 F -0.15 -5.90 16.38 44.97 0.74 -5.16 16 24 H 0.05 2.25 7.67 -2.39 -0.02 2.24 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 26 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 27 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 28 H 0.08 2.03 7.59 -2.38 -0.02 2.01 16 29 H 0.09 2.33 5.28 -2.39 -0.01 2.32 16 30 H 0.07 2.38 6.96 -2.39 -0.02 2.36 16 31 H 0.16 3.01 6.20 -2.91 -0.02 2.99 16 32 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.42 0.40 9.06 -74.06 -0.67 -0.27 16 34 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -78.76 292.60 3.80 -74.96 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.48 Total: 4.18 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 3.88 Total: 2.56 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -2.04 Total: -81.67 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.28 Total: -40.56 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.74 Total: -5.16 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -78.76 3.80 -74.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181255457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.563 kcal (2) G-P(sol) polarization free energy of solvation -78.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds