Wall clock time and date at job start Mon Mar 30 2020 00:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34721 * 117.00550 * 2 1 4 4 O 1.21488 * 119.99696 * 0.02562 * 3 2 1 5 5 C 1.47592 * 120.00308 * 180.02562 * 3 2 1 6 6 C 1.39728 * 120.12450 * 0.02562 * 5 3 2 7 7 C 1.37794 * 119.87653 * 179.97438 * 6 5 3 8 8 C 1.38693 * 120.12577 * 0.02562 * 7 6 5 9 9 F 1.35092 * 119.87909 * 179.97438 * 8 7 6 10 10 C 1.38649 * 120.24708 * 0.02562 * 8 7 6 11 11 C 1.50700 * 119.93670 * 180.02562 * 10 8 7 12 12 N 1.46498 * 109.47153 * 284.99452 * 11 10 8 13 13 C 1.46501 * 119.99926 * 270.00328 * 12 11 10 14 14 C 1.36932 * 119.99995 * 90.00258 * 12 11 10 15 15 H 1.08004 * 119.99714 * 344.61062 * 14 12 11 16 16 C 1.38817 * 120.00225 * 164.34126 * 14 12 11 17 17 N 1.31616 * 119.99693 * 344.63485 * 16 14 12 18 18 Si 1.86796 * 120.00078 * 164.63911 * 16 14 12 19 19 H 1.48500 * 109.47169 * 89.99621 * 18 16 14 20 20 H 1.48499 * 109.47152 * 209.99655 * 18 16 14 21 21 H 1.48500 * 109.47057 * 329.99585 * 18 16 14 22 22 C 1.37841 * 120.12669 * 0.26702 * 10 8 7 23 23 H 1.08999 * 109.47462 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46844 * 299.99735 * 1 2 3 25 25 H 1.08994 * 109.47433 * 59.99185 * 1 2 3 26 26 H 1.07999 * 120.05932 * 359.97438 * 6 5 3 27 27 H 1.07997 * 119.93881 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47154 * 164.99676 * 11 10 8 29 29 H 1.08998 * 109.47692 * 44.99766 * 11 10 8 30 30 H 1.09004 * 109.46890 * 264.91701 * 13 12 11 31 31 H 1.09002 * 109.47216 * 24.91982 * 13 12 11 32 32 H 1.08996 * 109.47039 * 144.91980 * 13 12 11 33 33 H 0.96994 * 120.00039 * 180.02562 * 17 16 14 34 34 H 1.07999 * 120.06882 * 179.70586 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4021 2.2192 0.0005 5 6 3.5376 1.2775 -0.0006 6 6 4.3011 0.1073 -0.0017 7 6 5.6768 0.1853 -0.0027 8 6 6.3039 1.4224 -0.0022 9 9 7.6530 1.4930 -0.0027 10 6 5.5514 2.5868 0.0000 11 6 6.2400 3.9273 0.0000 12 7 6.7831 4.1973 1.3335 13 6 5.9651 4.8920 2.3307 14 6 8.0554 3.8003 1.6478 15 1 8.5670 3.0829 1.0233 16 6 8.6896 4.3242 2.7660 17 7 8.2127 5.4043 3.3474 18 14 10.2200 3.4961 3.4454 19 1 11.4247 4.0749 2.7981 20 1 10.2922 3.7163 4.9122 21 1 10.1598 2.0389 3.1659 22 6 4.1745 2.5208 0.0071 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8898 26 1 3.8138 -0.8566 -0.0017 27 1 6.2679 -0.7186 -0.0031 28 1 5.5226 4.7043 -0.2643 29 1 7.0512 3.9191 -0.7279 30 1 6.1924 5.9578 2.3085 31 1 4.9097 4.7408 2.1041 32 1 6.1845 4.4943 3.3215 33 1 8.6560 5.7706 4.1285 34 1 3.5893 3.4284 0.0136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181914006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:24 Heat of formation + Delta-G solvation = -75.425544 kcal Electronic energy + Delta-G solvation = -20138.305865 eV Core-core repulsion = 16759.038088 eV Total energy + Delta-G solvation = -3379.267776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.45625 -40.50355 -38.57604 -36.41744 -35.57975 -32.29031 -30.85310 -30.26337 -27.81717 -26.21136 -25.58524 -23.80761 -22.33964 -21.34004 -20.16903 -17.71235 -17.34010 -16.86715 -16.65648 -16.39626 -15.76160 -15.39334 -14.61545 -14.44756 -13.85099 -13.53347 -13.46630 -13.40439 -13.20357 -12.81595 -12.58227 -12.19344 -11.93321 -11.66329 -11.31055 -10.90684 -10.84127 -10.74140 -10.69943 -10.51756 -10.35684 -9.97099 -9.74956 -8.83351 -8.53829 -8.39152 -6.87200 -5.71189 -3.11657 0.75896 1.44152 2.55823 2.63246 3.40394 3.46997 3.50345 3.81202 4.53622 4.54646 4.70520 4.90175 4.95120 5.03010 5.05864 5.31676 5.34338 5.44697 5.52476 5.67224 5.88939 6.06422 6.14393 6.19971 6.31755 6.38386 6.54003 6.69030 6.76745 7.03733 7.44542 7.72379 7.72819 7.89936 8.36313 9.24276 9.86548 10.31438 11.34604 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.005145 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.007118 B = 5440.754600 C = 5909.587040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.514 3.486 4 O -0.509 6.509 5 C -0.153 4.153 6 C -0.047 4.047 7 C -0.177 4.177 8 C 0.162 3.838 9 F -0.118 7.118 10 C -0.133 4.133 11 C 0.183 3.817 12 N -0.594 5.594 13 C 0.162 3.838 14 C -0.258 4.258 15 H 0.083 0.917 16 C -0.001 4.001 17 N -0.910 5.910 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 C -0.022 4.022 23 H 0.100 0.900 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.029 0.971 31 H -0.003 1.003 32 H 0.050 0.950 33 H 0.251 0.749 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 -11.278 -7.715 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.360 3.640 4 O -0.398 6.398 5 C -0.154 4.154 6 C -0.065 4.065 7 C -0.196 4.196 8 C 0.142 3.858 9 F -0.096 7.096 10 C -0.137 4.137 11 C 0.055 3.945 12 N -0.315 5.315 13 C 0.018 3.982 14 C -0.387 4.387 15 H 0.101 0.899 16 C -0.198 4.198 17 N -0.555 5.555 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.041 4.041 23 H 0.119 0.881 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.015 0.985 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.651 -10.843 -7.521 17.604 hybrid contribution 0.834 -0.426 0.625 1.126 sum -10.817 -11.269 -6.896 17.075 Atomic orbital electron populations 1.23247 0.76269 1.03539 1.02620 1.86541 1.23340 1.32949 1.84603 1.21203 0.89132 0.81257 0.72436 1.90831 1.66810 1.35983 1.46165 1.19011 0.88617 0.95106 1.12690 1.21086 0.92664 0.97832 0.94945 1.21077 0.95153 0.96829 1.06576 1.17906 0.77635 0.93723 0.96522 1.91540 1.28486 1.97020 1.92505 1.21407 0.93422 0.98660 1.00246 1.19714 0.96311 0.88966 0.89508 1.44025 1.12787 1.66847 1.07828 1.20878 0.88280 0.96375 0.92661 1.19534 0.90469 1.19261 1.09427 0.89923 1.24891 0.98436 0.96597 0.99892 1.70132 1.41579 1.20548 1.23286 0.86293 0.82957 0.79381 0.78214 1.21442 1.21634 1.20490 1.21022 0.93186 0.96604 0.93285 0.88138 0.91856 0.91904 0.84261 0.84423 0.92579 0.91799 0.95219 0.98489 0.93080 0.93826 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.30 9.81 -40.55 -0.40 -4.70 16 3 C 0.51 7.51 7.89 34.55 0.27 7.78 16 4 O -0.51 -8.56 16.13 -19.26 -0.31 -8.87 16 5 C -0.15 -2.28 5.87 -104.98 -0.62 -2.89 16 6 C -0.05 -0.61 9.61 -39.19 -0.38 -0.99 16 7 C -0.18 -2.53 10.01 -39.58 -0.40 -2.92 16 8 C 0.16 2.88 7.22 -39.26 -0.28 2.59 16 9 F -0.12 -2.33 14.18 2.25 0.03 -2.29 16 10 C -0.13 -2.41 5.46 -104.62 -0.57 -2.98 16 11 C 0.18 3.74 5.49 -5.19 -0.03 3.71 16 12 N -0.59 -14.94 2.92 -182.50 -0.53 -15.47 16 13 C 0.16 4.07 8.97 59.85 0.54 4.60 16 14 C -0.26 -7.08 9.23 -15.06 -0.14 -7.22 16 15 H 0.08 2.22 5.74 -52.48 -0.30 1.92 16 16 C 0.00 -0.02 5.08 -17.43 -0.09 -0.11 16 17 N -0.91 -26.72 10.43 55.49 0.58 -26.14 16 18 Si 0.90 22.21 29.58 -169.99 -5.03 17.18 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.02 -0.36 9.21 -39.18 -0.36 -0.72 16 23 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.14 1.44 7.61 -52.49 -0.40 1.04 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 29 H 0.06 1.29 7.97 -51.93 -0.41 0.88 16 30 H 0.03 0.79 7.53 -51.93 -0.39 0.40 16 31 H 0.00 -0.08 8.03 -51.93 -0.42 -0.49 16 32 H 0.05 1.39 6.89 -51.93 -0.36 1.03 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.14 2.25 7.59 -52.49 -0.40 1.85 16 LS Contribution 299.01 15.07 4.51 4.51 Total: -1.00 -31.66 299.01 -6.05 -37.71 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -3.91 Total: -4.15 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.98 Total: 2.23 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.05 Total: -41.61 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.71 Total: -13.57 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.03 Total: -2.29 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.66 -6.05 -37.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181914006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.718 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds