Wall clock time and date at job start Mon Mar 30 2020 00:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34721 * 117.00550 * 2 1 4 4 O 1.21488 * 119.99696 * 0.02562 * 3 2 1 5 5 C 1.47592 * 120.00308 * 180.02562 * 3 2 1 6 6 C 1.39728 * 120.12450 * 0.02562 * 5 3 2 7 7 C 1.37794 * 119.87653 * 179.97438 * 6 5 3 8 8 C 1.38693 * 120.12577 * 0.02562 * 7 6 5 9 9 F 1.35092 * 119.87909 * 179.97438 * 8 7 6 10 10 C 1.38649 * 120.24708 * 0.02562 * 8 7 6 11 11 C 1.50700 * 119.93670 * 180.02562 * 10 8 7 12 12 N 1.46498 * 109.47153 * 284.99452 * 11 10 8 13 13 C 1.46501 * 119.99926 * 270.00328 * 12 11 10 14 14 C 1.36932 * 119.99995 * 90.00258 * 12 11 10 15 15 H 1.08004 * 119.99714 * 344.61062 * 14 12 11 16 16 C 1.38817 * 120.00225 * 164.34126 * 14 12 11 17 17 N 1.31616 * 119.99693 * 344.63485 * 16 14 12 18 18 Si 1.86796 * 120.00078 * 164.63911 * 16 14 12 19 19 H 1.48500 * 109.47169 * 89.99621 * 18 16 14 20 20 H 1.48499 * 109.47152 * 209.99655 * 18 16 14 21 21 H 1.48500 * 109.47057 * 329.99585 * 18 16 14 22 22 C 1.37841 * 120.12669 * 0.26702 * 10 8 7 23 23 H 1.08999 * 109.47462 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46844 * 299.99735 * 1 2 3 25 25 H 1.08994 * 109.47433 * 59.99185 * 1 2 3 26 26 H 1.07999 * 120.05932 * 359.97438 * 6 5 3 27 27 H 1.07997 * 119.93881 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47154 * 164.99676 * 11 10 8 29 29 H 1.08998 * 109.47692 * 44.99766 * 11 10 8 30 30 H 1.09004 * 109.46890 * 264.91701 * 13 12 11 31 31 H 1.09002 * 109.47216 * 24.91982 * 13 12 11 32 32 H 1.08996 * 109.47039 * 144.91980 * 13 12 11 33 33 H 0.96994 * 120.00039 * 180.02562 * 17 16 14 34 34 H 1.07999 * 120.06882 * 179.70586 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4021 2.2192 0.0005 5 6 3.5376 1.2775 -0.0006 6 6 4.3011 0.1073 -0.0017 7 6 5.6768 0.1853 -0.0027 8 6 6.3039 1.4224 -0.0022 9 9 7.6530 1.4930 -0.0027 10 6 5.5514 2.5868 0.0000 11 6 6.2400 3.9273 0.0000 12 7 6.7831 4.1973 1.3335 13 6 5.9651 4.8920 2.3307 14 6 8.0554 3.8003 1.6478 15 1 8.5670 3.0829 1.0233 16 6 8.6896 4.3242 2.7660 17 7 8.2127 5.4043 3.3474 18 14 10.2200 3.4961 3.4454 19 1 11.4247 4.0749 2.7981 20 1 10.2922 3.7163 4.9122 21 1 10.1598 2.0389 3.1659 22 6 4.1745 2.5208 0.0071 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8898 26 1 3.8138 -0.8566 -0.0017 27 1 6.2679 -0.7186 -0.0031 28 1 5.5226 4.7043 -0.2643 29 1 7.0512 3.9191 -0.7279 30 1 6.1924 5.9578 2.3085 31 1 4.9097 4.7408 2.1041 32 1 6.1845 4.4943 3.3215 33 1 8.6560 5.7706 4.1285 34 1 3.5893 3.4284 0.0136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181914006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:23 Heat of formation + Delta-G solvation = -93.489004 kcal Electronic energy + Delta-G solvation = -20139.089155 eV Core-core repulsion = 16759.038088 eV Total energy + Delta-G solvation = -3380.051067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.87495 -41.60225 -39.81294 -37.53018 -37.36729 -34.00207 -32.04696 -31.99833 -28.70459 -28.04077 -27.38974 -24.97735 -23.84492 -22.84408 -21.49836 -19.03836 -18.63129 -18.47669 -17.98881 -17.40478 -17.21415 -16.94551 -16.32838 -15.71197 -15.40883 -15.04041 -14.90060 -14.74497 -14.41893 -14.25485 -13.92247 -13.44047 -13.30846 -13.06143 -12.94204 -12.77431 -12.58208 -12.32791 -12.03695 -11.93091 -11.80320 -11.75761 -11.67952 -10.62079 -10.05020 -9.74044 -8.90262 -7.82218 -5.24391 -0.46075 0.22984 1.37930 1.45493 1.46628 1.56516 1.65191 2.49218 2.63160 3.28422 3.31655 3.64162 3.70008 3.80926 3.86662 4.13980 4.23855 4.34730 4.37404 4.53247 4.73384 4.78749 4.85845 4.86691 4.90678 5.07092 5.16222 5.21906 5.36032 5.37717 5.63610 5.74065 5.80366 6.30126 6.64811 7.15038 7.85045 8.26412 9.22506 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.005145 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.007118 B = 5440.754600 C = 5909.587040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.518 3.482 4 O -0.537 6.537 5 C -0.155 4.155 6 C -0.025 4.025 7 C -0.165 4.165 8 C 0.136 3.864 9 F -0.136 7.136 10 C -0.149 4.149 11 C 0.182 3.818 12 N -0.612 5.612 13 C 0.180 3.820 14 C -0.257 4.257 15 H 0.085 0.915 16 C -0.058 4.058 17 N -0.942 5.942 18 Si 0.961 3.039 19 H -0.284 1.284 20 H -0.294 1.294 21 H -0.272 1.272 22 C -0.026 4.026 23 H 0.138 0.862 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.178 0.822 27 H 0.169 0.831 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.005 0.995 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.246 0.754 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 -14.111 -8.421 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.365 3.635 4 O -0.428 6.428 5 C -0.157 4.157 6 C -0.043 4.043 7 C -0.184 4.184 8 C 0.116 3.884 9 F -0.115 7.115 10 C -0.152 4.152 11 C 0.056 3.944 12 N -0.334 5.334 13 C 0.035 3.965 14 C -0.386 4.386 15 H 0.103 0.897 16 C -0.252 4.252 17 N -0.590 5.590 18 Si 0.790 3.210 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.197 1.197 22 C -0.045 4.045 23 H 0.156 0.844 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.195 0.805 27 H 0.186 0.814 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.023 0.977 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.833 -13.721 -8.273 20.528 hybrid contribution 1.018 0.350 0.723 1.297 sum -11.816 -13.371 -7.549 19.375 Atomic orbital electron populations 1.23616 0.74140 1.06045 1.02626 1.86519 1.25310 1.31149 1.83836 1.21110 0.88916 0.81653 0.71815 1.90826 1.67349 1.37124 1.47543 1.19143 0.89313 0.95110 1.12120 1.21487 0.92037 0.98709 0.92045 1.21393 0.95790 0.96429 1.04744 1.18286 0.76974 0.95046 0.98090 1.91483 1.29874 1.97175 1.92935 1.20983 0.94051 0.97438 1.02764 1.19786 0.96547 0.90908 0.87159 1.44216 1.12482 1.67234 1.09450 1.20560 0.89747 0.94658 0.91538 1.19834 0.91338 1.18359 1.09091 0.89698 1.25634 1.01491 0.97400 1.00701 1.70289 1.43048 1.22003 1.23691 0.85350 0.79871 0.78698 0.77106 1.21112 1.22014 1.19685 1.20979 0.92438 0.97598 0.93483 0.84390 0.92133 0.91732 0.80454 0.81356 0.91164 0.92345 0.97690 0.95700 0.95955 0.94470 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.60 16 2 O -0.35 -7.21 9.81 -56.31 -0.55 -7.76 16 3 C 0.52 13.86 7.89 70.29 0.55 14.42 16 4 O -0.54 -17.30 16.13 19.88 0.32 -16.98 16 5 C -0.16 -4.23 5.87 -20.10 -0.12 -4.35 16 6 C -0.02 -0.55 9.61 22.52 0.22 -0.33 16 7 C -0.17 -4.15 10.01 22.27 0.22 -3.93 16 8 C 0.14 4.64 7.22 22.48 0.16 4.80 16 9 F -0.14 -5.33 14.18 44.97 0.64 -4.69 16 10 C -0.15 -5.30 5.46 -19.86 -0.11 -5.41 16 11 C 0.18 7.49 5.49 85.63 0.47 7.96 16 12 N -0.61 -31.22 2.92 -731.31 -2.13 -33.35 16 13 C 0.18 9.21 8.97 127.77 1.15 10.36 16 14 C -0.26 -14.26 9.23 84.04 0.78 -13.48 16 15 H 0.09 4.60 5.74 -2.91 -0.02 4.59 16 16 C -0.06 -3.34 5.08 84.86 0.43 -2.91 16 17 N -0.94 -56.93 10.43 21.65 0.23 -56.70 16 18 Si 0.96 46.24 29.58 68.60 2.03 48.26 16 19 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 20 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 C -0.03 -0.82 9.21 22.53 0.21 -0.61 16 23 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.18 2.63 7.61 -2.91 -0.02 2.61 16 27 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.07 2.61 7.88 -2.39 -0.02 2.59 16 29 H 0.06 2.41 7.97 -2.39 -0.02 2.39 16 30 H 0.00 0.27 7.53 -2.39 -0.02 0.25 16 31 H 0.02 1.10 8.03 -2.39 -0.02 1.08 16 32 H 0.02 1.23 6.89 -2.39 -0.02 1.22 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.14 4.36 7.59 -2.91 -0.02 4.34 16 Total: -1.00 -69.37 299.01 6.80 -62.57 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 1.12 Total: 0.55 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.16 Total: 8.10 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -1.91 Total: -90.05 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.23 Total: -24.74 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.64 Total: -4.69 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -69.37 6.80 -62.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181914006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.922 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds