Wall clock time and date at job start Mon Mar 30 2020 01:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99863 * 2 1 4 4 H 1.09002 * 109.47267 * 328.29899 * 3 2 1 5 5 C 1.52994 * 109.47474 * 208.29729 * 3 2 1 6 6 N 1.46505 * 109.46931 * 65.29097 * 5 3 2 7 7 C 1.34776 * 119.99830 * 175.45799 * 6 5 3 8 8 O 1.21694 * 120.00267 * 359.97438 * 7 6 5 9 9 C 1.46374 * 120.00131 * 180.02562 * 7 6 5 10 10 H 1.08001 * 119.99789 * 359.97438 * 9 7 6 11 11 C 1.40049 * 119.99904 * 179.97438 * 9 7 6 12 12 N 1.30668 * 120.00360 * 359.97438 * 11 9 7 13 13 Si 1.86809 * 119.99412 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47262 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46867 * 120.00221 * 13 11 9 16 16 H 1.48500 * 109.46836 * 239.99643 * 13 11 9 17 17 C 1.50701 * 109.46702 * 88.29731 * 3 2 1 18 18 C 1.38244 * 119.97228 * 220.00160 * 17 3 2 19 19 C 1.38205 * 120.02513 * 180.02562 * 18 17 3 20 20 C 1.38458 * 119.97387 * 359.97438 * 19 18 17 21 21 F 1.35103 * 120.02834 * 179.97438 * 20 19 18 22 22 C 1.38466 * 119.94734 * 0.25782 * 20 19 18 23 23 C 1.38198 * 119.97480 * 359.46785 * 22 20 19 24 24 H 1.08996 * 109.47079 * 304.66861 * 1 2 3 25 25 H 1.08994 * 109.47140 * 64.67225 * 1 2 3 26 26 H 1.08996 * 109.46832 * 184.67321 * 1 2 3 27 27 H 1.08996 * 109.47619 * 185.29180 * 5 3 2 28 28 H 1.09001 * 109.47038 * 305.29374 * 5 3 2 29 29 H 0.96992 * 120.00204 * 355.45322 * 6 5 3 30 30 H 0.97000 * 120.00017 * 180.02562 * 12 11 9 31 31 H 1.08000 * 119.99355 * 0.02562 * 18 17 3 32 32 H 1.07996 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.08003 * 120.00997 * 179.74337 * 22 20 19 34 34 H 1.07998 * 119.98708 * 180.29511 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3593 1.9931 -0.5400 5 6 3.3780 1.2549 -0.6838 6 7 3.2045 0.9145 -2.0981 7 6 4.2696 0.9025 -2.9239 8 8 5.3754 1.1749 -2.4948 9 6 4.0963 0.5629 -4.3371 10 1 3.1150 0.3216 -4.7180 11 6 5.2031 0.5510 -5.1952 12 7 6.3903 0.8435 -4.7344 13 14 4.9818 0.1169 -6.9986 14 1 3.5502 -0.1728 -7.2660 15 1 5.4220 1.2585 -7.8401 16 1 5.7977 -1.0807 -7.3231 17 6 2.1760 1.7815 1.4202 18 6 1.9090 3.0990 1.7426 19 6 2.0611 3.5368 3.0447 20 6 2.4805 2.6552 4.0264 21 9 2.6301 3.0821 5.2994 22 6 2.7522 1.3369 3.7013 23 6 2.5939 0.9000 2.3998 24 1 -0.3633 0.5845 0.8452 25 1 -0.3633 0.4396 -0.9288 26 1 -0.3633 -1.0242 0.0837 27 1 3.8618 2.2281 -0.6010 28 1 3.9976 0.4989 -0.2014 29 1 2.3232 0.6977 -2.4402 30 1 7.1568 0.8355 -5.3289 31 1 1.5815 3.7865 0.9769 32 1 1.8522 4.5661 3.2964 33 1 3.0834 0.6493 4.4655 34 1 2.8012 -0.1293 2.1470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187549308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:52 Heat of formation + Delta-G solvation = -108.122504 kcal Electronic energy + Delta-G solvation = -19533.154258 eV Core-core repulsion = 16152.468635 eV Total energy + Delta-G solvation = -3380.685623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.99856 -39.72771 -37.71972 -36.87037 -33.49030 -32.34820 -31.35069 -31.21468 -28.14637 -26.53566 -25.57288 -23.27459 -22.98129 -20.98465 -19.67549 -17.81981 -17.29157 -16.95631 -16.41055 -15.70033 -15.62048 -15.35272 -14.98900 -14.66572 -13.93701 -13.91841 -13.67655 -13.62065 -13.26872 -13.14461 -12.54930 -12.21589 -11.90981 -11.58813 -11.37101 -11.21599 -11.08678 -10.97888 -10.66480 -10.44360 -10.18438 -9.69917 -9.20742 -8.84261 -8.70305 -7.59761 -7.48214 -6.16676 -4.61703 0.99332 1.13881 3.14324 3.22367 3.26861 3.44042 3.80912 4.11454 4.14696 4.51203 4.61628 4.64178 4.77111 5.00698 5.18097 5.24063 5.28102 5.36336 5.45608 5.49925 5.68656 5.79835 5.80800 5.88327 6.00255 6.14271 6.32341 6.37031 6.48942 6.77281 7.24960 7.45583 7.95215 8.10161 8.35152 9.04738 9.55789 10.62209 10.80799 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032715 B = 0.003867 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.677149 B = 7238.774405 C = 7731.007558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.121 3.879 4 H 0.074 0.926 5 C 0.143 3.857 6 N -0.763 5.763 7 C 0.555 3.445 8 O -0.582 6.582 9 C -0.544 4.544 10 H 0.068 0.932 11 C 0.087 3.913 12 N -0.768 5.768 13 Si 0.907 3.093 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.276 1.276 17 C -0.116 4.116 18 C -0.080 4.080 19 C -0.156 4.156 20 C 0.094 3.906 21 F -0.143 7.143 22 C -0.156 4.156 23 C -0.061 4.061 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.381 0.619 30 H 0.267 0.733 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 2.035 12.686 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.063 3.937 4 H 0.092 0.908 5 C 0.018 3.982 6 N -0.419 5.419 7 C 0.359 3.641 8 O -0.465 6.465 9 C -0.581 4.581 10 H 0.086 0.914 11 C -0.132 4.132 12 N -0.397 5.397 13 Si 0.732 3.268 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.117 4.117 18 C -0.099 4.099 19 C -0.175 4.175 20 C 0.075 3.925 21 F -0.122 7.122 22 C -0.175 4.175 23 C -0.079 4.079 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.213 0.787 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.351 2.110 13.023 17.404 hybrid contribution -0.702 0.025 -0.684 0.980 sum -12.053 2.135 12.339 17.381 Atomic orbital electron populations 1.22789 0.81492 1.02580 0.99883 1.88025 1.19293 1.26785 1.94685 1.21328 0.96565 0.85136 0.90688 0.90768 1.20925 0.92077 1.00827 0.84362 1.46043 1.11472 1.77426 1.06969 1.18231 0.82345 0.77321 0.86243 1.90604 1.24734 1.53582 1.77531 1.20908 0.94998 1.49930 0.92296 0.91402 1.25709 0.94622 0.92953 0.99945 1.70033 0.99183 1.34969 1.35533 0.86325 0.79189 0.78501 0.82776 1.18796 1.20203 1.20178 1.20468 1.00563 0.94056 0.96605 1.20932 0.98074 0.95241 0.95604 1.21079 1.03542 1.00043 0.92854 1.17763 1.02157 0.93530 0.79038 1.91487 1.93489 1.90458 1.36770 1.21174 1.03750 0.94437 0.98164 1.20934 0.95388 1.00573 0.91041 0.94362 0.93828 0.89733 0.91566 0.92585 0.78735 0.92192 0.84850 0.84769 0.84737 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.79 101.05 1.09 1.40 16 2 O -0.37 -5.28 9.59 -35.23 -0.34 -5.62 16 3 C 0.12 1.72 2.34 -27.89 -0.07 1.66 16 4 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 5 C 0.14 2.75 5.32 -4.04 -0.02 2.73 16 6 N -0.76 -17.14 5.50 -61.72 -0.34 -17.48 16 7 C 0.55 15.91 7.75 -12.99 -0.10 15.81 16 8 O -0.58 -19.02 15.02 5.19 0.08 -18.95 16 9 C -0.54 -15.44 9.54 -35.63 -0.34 -15.78 16 10 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 11 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 12 N -0.77 -23.19 11.83 55.55 0.66 -22.54 16 13 Si 0.91 20.15 29.56 -169.99 -5.02 15.13 16 14 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 C -0.12 -1.48 4.84 -104.62 -0.51 -1.99 16 18 C -0.08 -0.91 9.67 -39.59 -0.38 -1.29 16 19 C -0.16 -1.71 10.03 -39.51 -0.40 -2.11 16 20 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 21 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 22 C -0.16 -1.80 10.03 -39.51 -0.40 -2.20 16 23 C -0.06 -0.76 9.35 -39.59 -0.37 -1.13 16 24 H 0.04 0.36 8.07 -51.93 -0.42 -0.06 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.38 7.59 8.43 -40.82 -0.34 7.25 16 30 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 31 H 0.13 1.25 8.04 -52.49 -0.42 0.83 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.14 1.71 7.77 -52.49 -0.41 1.30 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -34.67 307.38 -6.24 -40.92 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.08 Total: 5.34 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.87 Total: 0.28 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.32 Total: -40.02 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.26 Total: -24.56 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.67 -6.24 -40.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187549308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.205 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds