Wall clock time and date at job start Mon Mar 30 2020 01:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99863 * 2 1 4 4 H 1.09002 * 109.47267 * 328.29899 * 3 2 1 5 5 C 1.52994 * 109.47474 * 208.29729 * 3 2 1 6 6 N 1.46505 * 109.46931 * 65.29097 * 5 3 2 7 7 C 1.34776 * 119.99830 * 175.45799 * 6 5 3 8 8 O 1.21694 * 120.00267 * 359.97438 * 7 6 5 9 9 C 1.46374 * 120.00131 * 180.02562 * 7 6 5 10 10 H 1.08001 * 119.99789 * 359.97438 * 9 7 6 11 11 C 1.40049 * 119.99904 * 179.97438 * 9 7 6 12 12 N 1.30668 * 120.00360 * 359.97438 * 11 9 7 13 13 Si 1.86809 * 119.99412 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47262 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46867 * 120.00221 * 13 11 9 16 16 H 1.48500 * 109.46836 * 239.99643 * 13 11 9 17 17 C 1.50701 * 109.46702 * 88.29731 * 3 2 1 18 18 C 1.38244 * 119.97228 * 220.00160 * 17 3 2 19 19 C 1.38205 * 120.02513 * 180.02562 * 18 17 3 20 20 C 1.38458 * 119.97387 * 359.97438 * 19 18 17 21 21 F 1.35103 * 120.02834 * 179.97438 * 20 19 18 22 22 C 1.38466 * 119.94734 * 0.25782 * 20 19 18 23 23 C 1.38198 * 119.97480 * 359.46785 * 22 20 19 24 24 H 1.08996 * 109.47079 * 304.66861 * 1 2 3 25 25 H 1.08994 * 109.47140 * 64.67225 * 1 2 3 26 26 H 1.08996 * 109.46832 * 184.67321 * 1 2 3 27 27 H 1.08996 * 109.47619 * 185.29180 * 5 3 2 28 28 H 1.09001 * 109.47038 * 305.29374 * 5 3 2 29 29 H 0.96992 * 120.00204 * 355.45322 * 6 5 3 30 30 H 0.97000 * 120.00017 * 180.02562 * 12 11 9 31 31 H 1.08000 * 119.99355 * 0.02562 * 18 17 3 32 32 H 1.07996 * 120.01604 * 180.02562 * 19 18 17 33 33 H 1.08003 * 120.00997 * 179.74337 * 22 20 19 34 34 H 1.07998 * 119.98708 * 180.29511 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3593 1.9931 -0.5400 5 6 3.3780 1.2549 -0.6838 6 7 3.2045 0.9145 -2.0981 7 6 4.2696 0.9025 -2.9239 8 8 5.3754 1.1749 -2.4948 9 6 4.0963 0.5629 -4.3371 10 1 3.1150 0.3216 -4.7180 11 6 5.2031 0.5510 -5.1952 12 7 6.3903 0.8435 -4.7344 13 14 4.9818 0.1169 -6.9986 14 1 3.5502 -0.1728 -7.2660 15 1 5.4220 1.2585 -7.8401 16 1 5.7977 -1.0807 -7.3231 17 6 2.1760 1.7815 1.4202 18 6 1.9090 3.0990 1.7426 19 6 2.0611 3.5368 3.0447 20 6 2.4805 2.6552 4.0264 21 9 2.6301 3.0821 5.2994 22 6 2.7522 1.3369 3.7013 23 6 2.5939 0.9000 2.3998 24 1 -0.3633 0.5845 0.8452 25 1 -0.3633 0.4396 -0.9288 26 1 -0.3633 -1.0242 0.0837 27 1 3.8618 2.2281 -0.6010 28 1 3.9976 0.4989 -0.2014 29 1 2.3232 0.6977 -2.4402 30 1 7.1568 0.8355 -5.3289 31 1 1.5815 3.7865 0.9769 32 1 1.8522 4.5661 3.2964 33 1 3.0834 0.6493 4.4655 34 1 2.8012 -0.1293 2.1470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187549308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:51 Heat of formation + Delta-G solvation = -132.579249 kcal Electronic energy + Delta-G solvation = -19534.214782 eV Core-core repulsion = 16152.468635 eV Total energy + Delta-G solvation = -3381.746147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.93265 -40.77563 -39.30537 -38.37814 -35.27050 -34.43348 -32.64945 -32.12592 -29.62764 -28.07206 -26.90644 -24.50951 -23.97358 -22.08020 -21.71452 -19.29138 -18.70469 -17.98641 -17.61213 -17.32467 -16.66184 -16.61709 -16.41714 -15.81121 -15.55913 -15.34786 -15.12895 -14.50335 -14.46897 -14.33340 -14.13259 -13.43448 -13.41824 -13.14764 -12.78657 -12.73479 -12.58608 -12.46528 -12.18017 -11.95994 -11.79585 -10.93295 -10.72638 -10.09672 -9.89032 -9.64697 -9.47473 -8.27631 -6.83852 0.04561 0.24869 1.42144 1.42499 1.60569 2.26254 2.48319 2.50513 2.75487 3.07988 3.24669 3.64575 3.73606 3.77272 3.93771 4.07479 4.09604 4.33452 4.42195 4.57304 4.61540 4.70432 4.88204 4.91515 4.95153 4.95725 5.11162 5.22361 5.34068 5.44962 5.86803 5.89114 6.21042 6.24414 6.28290 6.88548 7.55990 8.50463 8.69047 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032715 B = 0.003867 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.677149 B = 7238.774405 C = 7731.007558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.139 3.861 4 H 0.094 0.906 5 C 0.145 3.855 6 N -0.749 5.749 7 C 0.537 3.463 8 O -0.634 6.634 9 C -0.571 4.571 10 H 0.088 0.912 11 C 0.028 3.972 12 N -0.823 5.823 13 Si 1.000 3.000 14 H -0.246 1.246 15 H -0.268 1.268 16 H -0.270 1.270 17 C -0.128 4.128 18 C -0.079 4.079 19 C -0.153 4.153 20 C 0.084 3.916 21 F -0.146 7.146 22 C -0.158 4.158 23 C -0.072 4.072 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.396 0.604 30 H 0.274 0.726 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.568 2.222 11.950 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C 0.080 3.920 4 H 0.112 0.888 5 C 0.020 3.980 6 N -0.404 5.404 7 C 0.341 3.659 8 O -0.522 6.522 9 C -0.608 4.608 10 H 0.107 0.893 11 C -0.187 4.187 12 N -0.453 5.453 13 Si 0.819 3.181 14 H -0.169 1.169 15 H -0.193 1.193 16 H -0.195 1.195 17 C -0.129 4.129 18 C -0.097 4.097 19 C -0.172 4.172 20 C 0.065 3.935 21 F -0.125 7.125 22 C -0.177 4.177 23 C -0.090 4.090 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.229 0.771 30 H 0.084 0.916 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.490 2.291 12.320 18.413 hybrid contribution -0.093 -0.037 -0.351 0.365 sum -13.583 2.254 11.970 18.244 Atomic orbital electron populations 1.22997 0.79316 1.03897 1.00957 1.87983 1.21618 1.26669 1.94871 1.20995 0.93805 0.85831 0.91343 0.88823 1.20964 0.95273 0.99114 0.82656 1.45682 1.10761 1.75977 1.07932 1.18648 0.82742 0.77071 0.87456 1.90556 1.27036 1.55949 1.78612 1.21455 0.96378 1.50264 0.92704 0.89342 1.26997 0.93767 0.91946 1.06019 1.70200 1.00629 1.36210 1.38216 0.84949 0.80071 0.78346 0.74757 1.16864 1.19293 1.19506 1.20406 1.01885 0.94967 0.95691 1.21160 0.97417 0.94764 0.96357 1.21349 1.02453 1.01029 0.92353 1.17963 1.02453 0.93886 0.79190 1.91481 1.93547 1.90471 1.36986 1.21326 1.03372 0.94850 0.98155 1.20965 0.95909 1.00531 0.91560 0.93092 0.92844 0.88432 0.92911 0.94954 0.77057 0.91595 0.82745 0.82440 0.83228 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.79 113.37 1.22 1.68 16 2 O -0.39 -10.81 9.59 -148.98 -1.43 -12.24 16 3 C 0.14 3.82 2.34 29.85 0.07 3.89 16 4 H 0.09 2.20 7.71 -2.39 -0.02 2.18 16 5 C 0.14 5.69 5.32 86.38 0.46 6.15 16 6 N -0.75 -34.02 5.50 -467.40 -2.57 -36.59 16 7 C 0.54 31.56 7.75 86.36 0.67 32.23 16 8 O -0.63 -43.23 15.02 -4.33 -0.07 -43.30 16 9 C -0.57 -32.54 9.54 24.83 0.24 -32.30 16 10 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 11 C 0.03 1.54 5.50 85.31 0.47 2.01 16 12 N -0.82 -50.82 11.83 21.84 0.26 -50.56 16 13 Si 1.00 40.88 29.56 68.60 2.03 42.91 16 14 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 15 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 17 C -0.13 -3.16 4.84 -19.86 -0.10 -3.26 16 18 C -0.08 -1.63 9.67 22.26 0.22 -1.41 16 19 C -0.15 -3.03 10.03 22.31 0.22 -2.80 16 20 C 0.08 1.88 7.30 22.38 0.16 2.04 16 21 F -0.15 -3.37 17.27 44.97 0.78 -2.59 16 22 C -0.16 -3.51 10.03 22.31 0.22 -3.29 16 23 C -0.07 -1.75 9.35 22.26 0.21 -1.54 16 24 H 0.05 0.84 8.07 -2.39 -0.02 0.82 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.40 15.52 8.43 -92.71 -0.78 14.74 16 30 H 0.27 15.26 8.29 -92.71 -0.77 14.50 16 31 H 0.15 2.47 8.04 -2.91 -0.02 2.45 16 32 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.13 3.35 7.77 -2.91 -0.02 3.33 16 Total: -1.00 -77.15 307.38 3.40 -73.75 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.34 Total: 25.22 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 4.07 Total: 3.40 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.31 Total: -87.15 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -1.49 Total: -55.54 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -77.15 3.40 -73.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187549308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.831 kcal (2) G-P(sol) polarization free energy of solvation -77.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds